mRNA_S-dermatodea_contig11594.1014.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11594.1014.1
Unique NamemRNA_S-dermatodea_contig11594.1014.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE)

HSP 1 Score: 122 bits (305), Expect = 1.020e-32
Identity = 65/116 (56.03%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 NPHRRVFNDMLDSMEQDILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGAGAGGSDFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDGDEGERK 348
            +P RR  +D+ DSME+D++ P GM SRF T+ FP   S ++   +P     GG   GM+LD HET+KG+E+SADLPGM+ EDI VD+D E+GVLTVTGER+Q+REEKS+GD  +RK
Sbjct:   10 DPFRRAMHDVFDSMERDLMAPSGMSSRFHTMDFPGS-SVALVSAVPSMGVEGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRK 122          
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.800e-29
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   16 VFNDMLDSMEQDILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGA-GAGGSDFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDGDEGERK 348
              ND+  S+E+++L PWG+ SRFPT       +R MFP  P    G G    GM LD HET  GFE+ ADLPGM+ ED+++DVD E+GVLTV+GER+ ++EEK DG +G+RK
Sbjct:   19 TINDVFGSIEREMLAPWGLASRFPT-------TRDMFPTFPTSLFGDGSRSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRK 123          
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.570e-21
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   52 ILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGAGAGGS-DFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDGDEGERK 348
            +L PWG+  RFPT       +R M P +       GS    M+LD HET  GFE+ ADLPGM+ ED+++DVD E+GVLTV+GER+ KREEK D  +G+RK
Sbjct:    1 MLAPWGLAFRFPT-------ARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEKRDDKDGDRK 93          
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: A0A6H5JPQ3_9PHAE (HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.220e-20
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   52 ILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGAGAGGS-DFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDGDEGER 345
            +L PWG  SRFPT       +R M P +       GS    M+LD HET  GFE+ ADLPGM+ ED+++DVD E+GVLTV+GER+ KRE K DG  G+R
Sbjct:    1 MLAPWGFASRFPT-------ARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKRE-KLDGKNGDR 91          
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.410e-15
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1
Query:  115 RSMFPLLPGGAGAGGS-DFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDGDEGERK 348
            R M P +       GS    M+LD HET  GFE+ ADLPGM+ ED+++DVD E+GVLTV+GER+ +REEK D  +G+RK
Sbjct:   70 RDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEKRDDKDGDRK 148          
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: UPI0016891749 (Hsp20/alpha crystallin family protein n=1 Tax=Microcystis elabens TaxID=44824 RepID=UPI0016891749)

HSP 1 Score: 58.9 bits (141), Expect = 1.570e-8
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  103 DRGSRSMFPLLPGG-AGAGG--SDFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKS 324
            DR +RS+    PG  AGAGG  +D+   +D+ ET+ G+E+ AD+PG+R +D+ V VDD  GVLTV GER+Q+++E++
Sbjct:   17 DRYTRSLPWPWPGSRAGAGGLLADWHPRVDIVETEGGYEIQADIPGVRKQDLKVTVDD--GVLTVEGERQQEKKEEN 91          
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: A0A3N2R0I9_9GAMM (Hsp20/alpha crystallin family protein n=3 Tax=Marinobacter TaxID=2742 RepID=A0A3N2R0I9_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 4.820e-7
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   19 FNDMLDSMEQDILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGAGAGGSDFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDG 330
            F D+LD   +      G+PS   T G  DR +R +F           SD+   +D+HET + FE+ A+LPG++ ED+ V V D  GVLT+ GER QK+EE  +G
Sbjct:   13 FEDLLDRYNRHF----GLPS---TQG--DRENRDLFRR---------SDWAPAVDIHETPEAFEIHAELPGIKKEDVKVTVHD--GVLTLQGER-QKKEESGEG 95          
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: A0A4R7JXD3_9GAMM (HSP20 family molecular chaperone IbpA n=1 Tax=Halospina denitrificans TaxID=332522 RepID=A0A4R7JXD3_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 2.960e-6
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:  181 DLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDG 330
            DL ETD+G+E+  DLPGM+ +DI VD+ D  G+LTV+GER  +RE++  G
Sbjct:   81 DLSETDEGYELQLDLPGMKKDDIQVDLTD--GLLTVSGERSDEREDERKG 128          
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein n=40 Tax=Poaceae TaxID=4479 RepID=HS17A_ORYSJ)

HSP 1 Score: 52.8 bits (125), Expect = 4.250e-6
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   49 DILVPWGMPSRFPTIGFP----DRGSRSMFPLLPGGAGAGGSDF-GMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSD 327
            ++  P+ +    P  GFP       S S+FP  P GA +  + F G  +D  ET +     AD+PG++ E++ V+VDD   +L ++GER +++EEK+D
Sbjct:    8 NVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDD-GNILQISGERNKEQEEKTD 104          
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein n=18 Tax=Poaceae TaxID=4479 RepID=HS181_ORYSJ)

HSP 1 Score: 52.8 bits (125), Expect = 4.250e-6
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   49 DILVPWGMPSRFPTIGFP----DRGSRSMFPLLPGGAGAGGSDF-GMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSD 327
            ++  P+ +    P  GFP     R S S+FP  P G  +  + F G  +D  ET +     AD+PG++ E++ V+V+D   VL ++GER +++EEK+D
Sbjct:    8 NVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVED-GNVLQISGERSKEQEEKTD 104          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3VMZ8_FUCSE1.020e-3256.03Heat shock protein 20 n=2 Tax=Fucus serratus TaxID... [more]
D7FUU6_ECTSI1.800e-2951.79Small heat shock protein heat shock protein 20 n=1... [more]
A0A6H5KKF0_9PHAE1.570e-2151.00HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JPQ3_9PHAE1.220e-2051.52HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
A0A6H5JFM4_9PHAE4.410e-1553.16HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
UPI00168917491.570e-848.05Hsp20/alpha crystallin family protein n=1 Tax=Micr... [more]
A0A3N2R0I9_9GAMM4.820e-740.38Hsp20/alpha crystallin family protein n=3 Tax=Mari... [more]
A0A4R7JXD3_9GAMM2.960e-654.00HSP20 family molecular chaperone IbpA n=1 Tax=Halo... [more]
HS17A_ORYSJ4.250e-634.6917.9 kDa class I heat shock protein n=40 Tax=Poace... [more]
HS181_ORYSJ4.250e-634.6918.1 kDa class I heat shock protein n=18 Tax=Poace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11594contigS-dermatodea_contig11594:3823..4173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue3.7e-22
Seed eggNOG ortholog2880.D7FUU6
KEGG koko:K07200,ko:K13993
KEGG Pathwayko04068,ko04141,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04141,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.response to heat
EggNOG OGsCOG0071@1,KOG0710@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924209.7835348-CDS-S-dermatodea_contig11594:3822..41461622924209.7835348-CDS-S-dermatodea_contig11594:3822..4146Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11594 3823..4146 -
1694079094.8666797-CDS-S-dermatodea_contig11594:3822..41461694079094.8666797-CDS-S-dermatodea_contig11594:3822..4146Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11594 3823..4146 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924209.791935-UTR-S-dermatodea_contig11594:4146..41731622924209.791935-UTR-S-dermatodea_contig11594:4146..4173Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11594 4147..4173 -
1694079094.8817768-UTR-S-dermatodea_contig11594:4146..41731694079094.8817768-UTR-S-dermatodea_contig11594:4146..4173Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11594 4147..4173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11594.1014.1prot_S-dermatodea_contig11594.1014.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11594 3823..4146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11594.1014.1

>prot_S-dermatodea_contig11594.1014.1 ID=prot_S-dermatodea_contig11594.1014.1|Name=mRNA_S-dermatodea_contig11594.1014.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
MLDSMEQDILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGAGAGGSDFGMH
LDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSD
GDEGERK*
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mRNA from alignment at S-dermatodea_contig11594:3823..4173-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11594.1014.1 ID=mRNA_S-dermatodea_contig11594.1014.1|Name=mRNA_S-dermatodea_contig11594.1014.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at S-dermatodea_contig11594:3823..4173- (Saccorhiza dermatodea SderLu1190fm monoicous)
AACCCTCACAGGCGCGTCTTCAACGACATGTTAGACTCCATGGAACAAGA CATCCTGGTGCCCTGGGGTATGCCCTCGAGGTTTCCCACCATCGGTTTCC CCGATCGCGGCTCGCGTAGTATGTTCCCGCTTCTCCCAGGCGGAGCCGGA GCCGGGGGTAGCGACTTCGGCATGCATCTAGACCTCCACGAGACCGACAA GGGGTTCGAGATGAGCGCCGATCTGCCGGGCATGAGGATGGAGGACATTG CAGTGGATGTGGACGACGAGACTGGGGTGCTAACTGTGACCGGGGAGCGC GAGCAGAAGCGGGAGGAGAAGAGCGACGGCGACGAAGGCGAGAGGAAGTG A
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Coding sequence (CDS) from alignment at S-dermatodea_contig11594:3823..4173-

>mRNA_S-dermatodea_contig11594.1014.1 ID=mRNA_S-dermatodea_contig11594.1014.1|Name=mRNA_S-dermatodea_contig11594.1014.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig11594:3823..4173- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTAGACTCCATGGAACAAGACATCCTGGTGCCCTGGGGTATGCCCTC
GAGGTTTCCCACCATCGGTTTCCCCGATCGCGGCTCGCGTAGTATGTTCC
CGCTTCTCCCAGGCGGAGCCGGAGCCGGGGGTAGCGACTTCGGCATGCAT
CTAGACCTCCACGAGACCGACAAGGGGTTCGAGATGAGCGCCGATCTGCC
GGGCATGAGGATGGAGGACATTGCAGTGGATGTGGACGACGAGACTGGGG
TGCTAACTGTGACCGGGGAGCGCGAGCAGAAGCGGGAGGAGAAGAGCGAC
GGCGACGAAGGCGAGAGGAAGTGAATGTTAGACTCCATGGAACAAGACAT
CCTGGTGCCCTGGGGTATGCCCTCGAGGTTTCCCACCATCGGTTTCCCCG
ATCGCGGCTCGCGTAGTATGTTCCCGCTTCTCCCAGGCGGAGCCGGAGCC
GGGGGTAGCGACTTCGGCATGCATCTAGACCTCCACGAGACCGACAAGGG
GTTCGAGATGAGCGCCGATCTGCCGGGCATGAGGATGGAGGACATTGCAG
TGGATGTGGACGACGAGACTGGGGTGCTAACTGTGACCGGGGAGCGCGAG
CAGAAGCGGGAGGAGAAGAGCGACGGCGACGAAGGCGAGAGGAAGTGA
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