mRNA_S-dermatodea_contig1159.1011.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1159.1011.1
Unique NamemRNA_S-dermatodea_contig1159.1011.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1159.1011.1 vs. uniprot
Match: D7G8G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.030e-13
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:   59 PKWIRVGEKVRFSTVVSAVLIPSIEDISAATKQELWWQAADFYEFRMNHARRQH 220
            PKW+RVGEKV FST+V+AVLIPS  D++ ATK+ELWWQ  D+ EFR+N+A   H
Sbjct:  155 PKWVRVGEKVCFSTIVAAVLIPSSHDLTVATKRELWWQPTDYAEFRVNYATHMH 208
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BLAST of mRNA_S-dermatodea_contig1159.1011.1 vs. uniprot
Match: A0A6H5JH78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH78_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.380e-13
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:   59 PKWIRVGEKVRFSTVVSAVLIPSIEDISAATKQELWWQAADFYEFRMNHARRQH 220
            PKW+RVGEKV FST+V+AVLIPS  D++ ATK+ELWWQ  D+ EFR+N+A   H
Sbjct:  152 PKWVRVGEKVCFSTIVAAVLIPSSHDLTVATKRELWWQPTDYAEFRVNYATHMH 205
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1159.1011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8G4_ECTSI2.030e-1364.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH78_9PHAE2.380e-1364.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1159contigS-dermatodea_contig1159:15533..18201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1298
Cds size954
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1159.1011.1prot_S-dermatodea_contig1159.1011.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1159 16451..18053 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924209.353467-UTR-S-dermatodea_contig1159:15532..156971622924209.353467-UTR-S-dermatodea_contig1159:15532..15697Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1159 15533..15697 +
1694079094.4806-UTR-S-dermatodea_contig1159:15532..156971694079094.4806-UTR-S-dermatodea_contig1159:15532..15697Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1159 15533..15697 +
1622924209.3618443-UTR-S-dermatodea_contig1159:16419..164501622924209.3618443-UTR-S-dermatodea_contig1159:16419..16450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1159 16420..16450 +
1694079094.4887834-UTR-S-dermatodea_contig1159:16419..164501694079094.4887834-UTR-S-dermatodea_contig1159:16419..16450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1159 16420..16450 +
1622924209.4021206-UTR-S-dermatodea_contig1159:18053..182011622924209.4021206-UTR-S-dermatodea_contig1159:18053..18201Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1159 18054..18201 +
1694079094.5146687-UTR-S-dermatodea_contig1159:18053..182011694079094.5146687-UTR-S-dermatodea_contig1159:18053..18201Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1159 18054..18201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924209.372665-CDS-S-dermatodea_contig1159:16450..168791622924209.372665-CDS-S-dermatodea_contig1159:16450..16879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1159 16451..16879 +
1694079094.497157-CDS-S-dermatodea_contig1159:16450..168791694079094.497157-CDS-S-dermatodea_contig1159:16450..16879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1159 16451..16879 +
1622924209.3865237-CDS-S-dermatodea_contig1159:17528..180531622924209.3865237-CDS-S-dermatodea_contig1159:17528..18053Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1159 17529..18053 +
1694079094.5056748-CDS-S-dermatodea_contig1159:17528..180531694079094.5056748-CDS-S-dermatodea_contig1159:17528..18053Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1159 17529..18053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1159.1011.1

>prot_S-dermatodea_contig1159.1011.1 ID=prot_S-dermatodea_contig1159.1011.1|Name=mRNA_S-dermatodea_contig1159.1011.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=318bp
MNHARRQHGLLKDEGDDDDAQAGQRQQQTASPVIAAAATPYGNTAPSSPP
ATPSRATPEAVAVNGNNNEACGVTATVQGVLVLAAAPAPAPVSSRPRPVS
GSAAPGVAVAGGRNKDSSRQKKGHGATSGLVHERVVKPAARERDARARCA
PAPGHNDQQKNISRRFMDGRRSVSAGATYHGGHRLVRGNRQTYYAGPSQD
QFAARGGYGNMNNAHRVAATSGQFYVNGNFARVNGSAPPRIGCPPPSFGN
GPPLAEAFPPAQHQLQHMRGCGMGAMAMGLPQQQQSLAPPAMMVQVPDSE
QFSMWRSQLVFAPARMQ*
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mRNA from alignment at S-dermatodea_contig1159:15533..18201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1159.1011.1 ID=mRNA_S-dermatodea_contig1159.1011.1|Name=mRNA_S-dermatodea_contig1159.1011.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2669bp|location=Sequence derived from alignment at S-dermatodea_contig1159:15533..18201+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGCGGAAGCAGCTTCCGCGACCGCGCGGCCGCGCTACGTACGCCCCG
ATAACATCCCCAAGTGGATCCGCGTTGGGGAGAAAGTGCGCTTTTCCACC
GTCGTGTCGGCGGTCCTGATTCCTTCCATCGAGGACATCTCTGCGGCCAC
GAAGCAAGAGCTATGGTGGGTGTCTTCCGTAGTATTGTATCATGTGCGCG
TGTTGTTTTTGGTTTTGTTTTGTTTTTGTTTTCATTGCTGCTGCTGGTGC
TGGCTGTCATAAAAAACAAAAGCTGTCAAATGGGTGTGCGTGCGTGTGTC
GTGGGCCTGGTGCGTTGCATCATACACGACGCGTCCATATGTATCTGAAC
CGATGCCATTTACTGACTGTATTTGGGGGTGGAGTATTTTTACGATATAT
TTACCCCGGTCGTTCCCTGCGTGTGTGCATATACATTCGCGTTTGTTTTT
GTGGTCCATGCGAGCCACCTTCTCTTCCCGTAGGGTCGGAGAGACTTGTG
CCCCCGAGTATCACAGCTTTTTCGTCAACCTTTCATAGAAGGCCGTCTTG
CTCTCTTTCGCGTGTGTGCCTTTGGTTACTGTCGACAAGAAAAAGGTCCG
GCTGTCTCGTTATCTCGAAGAACAATTATTGTTTCGTATGATTTCCTGAA
GGTACCCCCGAACGATACATTGTATGAATACAAGAGTATGTACGTAGCAA
ACAGGAGGTCGTTCCGGAGACCTTTTGGATTGCCTCTCTCCCACGAAAAA
ACAACAGTGGCACCCTGTGTATTGCCATTCGAGCCCCGCCCCGACCCCTT
GGCTTCGCTGACGACCTTGGCGTCGCTGACGAATGAACTCGAAAGTTGAC
CTTTGTTCACCCCCCACATGCTCTACCTACGACACAGGTGGCAGGCCGCC
GACTTCTACGAGTTCCGCATGAACCACGCCAGGCGCCAGCACGGTCTCCT
CAAGGACGAGGGCGATGACGACGATGCGCAGGCAGGCCAAAGGCAGCAGC
AGACCGCCTCGCCCGTCATCGCCGCCGCCGCCACCCCATATGGCAATACC
GCTCCGTCTTCGCCGCCCGCTACCCCGTCCAGAGCAACGCCGGAGGCAGT
GGCCGTGAACGGGAACAACAACGAAGCTTGCGGTGTTACCGCTACGGTGC
AGGGGGTGCTGGTTCTCGCCGCTGCCCCGGCCCCCGCCCCTGTTTCGTCT
CGCCCTCGCCCAGTCTCCGGCAGCGCCGCCCCGGGGGTTGCGGTGGCCGG
CGGGCGCAACAAAGACAGCAGCAGGCAGAAGAAGGGACATGGCGCCACGT
CAGGCCTCGTCCATGAGCGCGTCGTCAAGCCTGCTGCTCGTGAGAGGGTG
AGTGAGCGAACGAATCGAGCCCAAGGGCTCTTCTGTAGGGGCTTGTCATC
CAGTTGGCGCTCGTTCCTGGCATGACACTTTCAAAGTTCGAACTTTTTAG
ACATGAACATCTGCGATAAGCGTTCGACGCACTCTCTCCCTGCTGCCTCT
CCGTAGGTTTACAAAATAAATCGTGCTGTCGGAGCTATTTGTAAATAGCG
GGATACCTTCTAGCTGTGGTGTCTGTTATATACGCCCGTATCTGGGGTTC
GTCCTTTCAAGCGTCTGCCTTGAGTTGGGCCTTACGCTCGATTTCCTGAA
CGCCCATGACCCCATCTATGCTGGATCATGGTCCGCCTTTGTTCGTCTTT
GACGTACACTCAGTAGCTGTTGTTTTCGTATTCGTGCTGCGTTGTGCACT
ACGATATCGTATTGATGCGTCTGCCTGCATACCGTTTTTTTTGTTAACTC
TCATGTCTACTGCTTCGGTTATGCATTCAGTGCATAACTGTTGGGACCCT
GTTCAGCTGACGTACATATACAAATACAGCAGTGTACCAAGGCTACATGA
GAGGAAGATCCATCTCGAATCGCATCCACCCAGTGCCCGCCTAAAAGTTC
ACCTCCCCCCTCTCCCCCCCCCCCCGCTCCGCTAAACGTCTCTTAGGATG
CCCGCGCTCGATGCGCCCCTGCCCCCGGCCACAACGACCAGCAGAAGAAC
ATATCGCGCCGCTTCATGGACGGCCGCAGGAGCGTCTCTGCGGGCGCCAC
CTACCACGGTGGCCACCGCCTTGTTCGCGGCAACCGCCAGACGTACTACG
CAGGGCCTAGCCAGGACCAGTTTGCCGCACGTGGTGGTTACGGAAATATG
AACAACGCCCACCGCGTCGCCGCCACCAGCGGCCAGTTCTACGTGAACGG
TAACTTCGCTCGCGTGAACGGATCGGCGCCCCCGCGCATTGGATGCCCGC
CTCCCTCTTTCGGCAACGGACCGCCGCTGGCGGAGGCGTTCCCCCCCGCT
CAGCACCAGCTGCAGCACATGCGGGGATGTGGCATGGGGGCGATGGCCAT
GGGTCTGCCGCAGCAGCAGCAGTCGCTCGCGCCCCCGGCCATGATGGTGC
AAGTGCCGGACTCCGAGCAGTTCAGCATGTGGCGCAGCCAGCTAGTCTTC
GCTCCCGCCAGGATGCAGTGAGTGAGATGAGATTCAGTCTCGAGATGCGG
GCCAGTCGAACAGAAGCGCGACAGGGTGGATCCGTTCCGGTATGTATGCA
CCGGTGCTTAGCCCGGACAGAGAGTGCCTGGCGCTTAACGCAATGACGGT
AGAAGGCGTAATTTTTCAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1159:15533..18201+

>mRNA_S-dermatodea_contig1159.1011.1 ID=mRNA_S-dermatodea_contig1159.1011.1|Name=mRNA_S-dermatodea_contig1159.1011.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at S-dermatodea_contig1159:15533..18201+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACCACGCCAGGCGCCAGCACGGTCTCCTCAAGGACGAGGGCGATGA
CGACGATGCGCAGGCAGGCCAAAGGCAGCAGCAGACCGCCTCGCCCGTCA
TCGCCGCCGCCGCCACCCCATATGGCAATACCGCTCCGTCTTCGCCGCCC
GCTACCCCGTCCAGAGCAACGCCGGAGGCAGTGGCCGTGAACGGGAACAA
CAACGAAGCTTGCGGTGTTACCGCTACGGTGCAGGGGGTGCTGGTTCTCG
CCGCTGCCCCGGCCCCCGCCCCTGTTTCGTCTCGCCCTCGCCCAGTCTCC
GGCAGCGCCGCCCCGGGGGTTGCGGTGGCCGGCGGGCGCAACAAAGACAG
CAGCAGGCAGAAGAAGGGACATGGCGCCACGTCAGGCCTCGTCCATGAGC
GCGTCGTCAAGCCTGCTGCTCGTGAGAGGATGAACCACGCCAGGCGCCAG
CACGGTCTCCTCAAGGACGAGGGCGATGACGACGATGCGCAGGCAGGCCA
AAGGCAGCAGCAGACCGCCTCGCCCGTCATCGCCGCCGCCGCCACCCCAT
ATGGCAATACCGCTCCGTCTTCGCCGCCCGCTACCCCGTCCAGAGCAACG
CCGGAGGCAGTGGCCGTGAACGGGAACAACAACGAAGCTTGCGGTGTTAC
CGCTACGGTGCAGGGGGTGCTGGTTCTCGCCGCTGCCCCGGCCCCCGCCC
CTGTTTCGTCTCGCCCTCGCCCAGTCTCCGGCAGCGCCGCCCCGGGGGTT
GCGGTGGCCGGCGGGCGCAACAAAGACAGCAGCAGGCAGAAGAAGGGACA
TGGCGCCACGTCAGGCCTCGTCCATGAGCGCGTCGTCAAGCCTGCTGCTC
GTGAGAGGGATGCCCGCGCTCGATGCGCCCCTGCCCCCGGCCACAACGAC
CAGCAGAAGAACATATCGCGCCGCTTCATGGACGGCCGCAGGAGCGTCTC
TGCGGGCGCCACCTACCACGGTGGCCACCGCCTTGTTCGCGGCAACCGCC
AGACGTACTACGCAGGGCCTAGCCAGGACCAGTTTGCCGCACGTGGTGGT
TACGGAAATATGAACAACGCCCACCGCGTCGCCGCCACCAGCGGCCAGTT
CTACGTGAACGGTAACTTCGCTCGCGTGAACGGATCGGCGCCCCCGCGCA
TTGGATGCCCGCCTCCCTCTTTCGGCAACGGACCGCCGCTGGCGGAGGCG
TTCCCCCCCGCTCAGCACCAGCTGCAGCACATGCGGGGATGTGGCATGGG
GGCGATGGCCATGGGTCTGCCGCAGCAGCAGCAGTCGCTCGCGCCCCCGG
CCATGATGGTGCAAGTGCCGGACTCCGAGCAGTTCAGCATGTGGCGCAGC
CAGCTAGTCTTCGCTCCCGCCAGGATGCAGTGAGATGCCCGCGCTCGATG
CGCCCCTGCCCCCGGCCACAACGACCAGCAGAAGAACATATCGCGCCGCT
TCATGGACGGCCGCAGGAGCGTCTCTGCGGGCGCCACCTACCACGGTGGC
CACCGCCTTGTTCGCGGCAACCGCCAGACGTACTACGCAGGGCCTAGCCA
GGACCAGTTTGCCGCACGTGGTGGTTACGGAAATATGAACAACGCCCACC
GCGTCGCCGCCACCAGCGGCCAGTTCTACGTGAACGGTAACTTCGCTCGC
GTGAACGGATCGGCGCCCCCGCGCATTGGATGCCCGCCTCCCTCTTTCGG
CAACGGACCGCCGCTGGCGGAGGCGTTCCCCCCCGCTCAGCACCAGCTGC
AGCACATGCGGGGATGTGGCATGGGGGCGATGGCCATGGGTCTGCCGCAG
CAGCAGCAGTCGCTCGCGCCCCCGGCCATGATGGTGCAAGTGCCGGACTC
CGAGCAGTTCAGCATGTGGCGCAGCCAGCTAGTCTTCGCTCCCGCCAGGA
TGCAGTGA
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