mRNA_S-dermatodea_contig1159.1010.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1159.1010.1
Unique NamemRNA_S-dermatodea_contig1159.1010.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1159.1010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1159contigS-dermatodea_contig1159:13561..15499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size518
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924209.3112283-CDS-S-dermatodea_contig1159:13560..139201622924209.3112283-CDS-S-dermatodea_contig1159:13560..13920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1159 13561..13920 +
1694079094.459875-CDS-S-dermatodea_contig1159:13560..139201694079094.459875-CDS-S-dermatodea_contig1159:13560..13920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1159 13561..13920 +
1622924209.3247452-CDS-S-dermatodea_contig1159:15341..154971622924209.3247452-CDS-S-dermatodea_contig1159:15341..15497Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1159 15342..15497 +
1694079094.4700522-CDS-S-dermatodea_contig1159:15341..154971694079094.4700522-CDS-S-dermatodea_contig1159:15341..15497Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1159 15342..15497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1159.1010.1prot_S-dermatodea_contig1159.1010.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1159 13561..15497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1159.1010.1

>prot_S-dermatodea_contig1159.1010.1 ID=prot_S-dermatodea_contig1159.1010.1|Name=mRNA_S-dermatodea_contig1159.1010.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp
ITTRSFPLFTTTQHTTNVRKSRRRGTKIKNHYTITQAKIIHPPASPVARQ
EMRSGANPTNRRLSARERAKASSSATAALMDRFEQDAVGGTDSDRAAGYG
SDRDDMSDSGGLNYLLALTKGADDVNKPAALHQQHQPSSGAEMRSACVPT
GNHNTKEHERAFTTPAARPAAA
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mRNA from alignment at S-dermatodea_contig1159:13561..15499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1159.1010.1 ID=mRNA_S-dermatodea_contig1159.1010.1|Name=mRNA_S-dermatodea_contig1159.1010.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1939bp|location=Sequence derived from alignment at S-dermatodea_contig1159:13561..15499+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCACAACGAGGTCTTTCCCACTTTTTACAACAACGCAACACACAACAAA
CGTGCGCAAGTCACGTCGTCGGGGAACAAAAATAAAAAATCACTACACCA
TCACACAAGCAAAAATAATACACCCACCAGCATCTCCCGTCGCGCGACAA
GAGATGAGGAGTGGAGCCAACCCTACCAACCGCCGCCTCAGCGCCCGAGA
GAGAGCGAAGGCTTCTTCGTCTGCGACAGCGGCCCTGATGGACAGGTTCG
AGCAGGACGCGGTAGGAGGGACAGACTCAGACCGGGCCGCAGGTTATGGG
TCTGATCGTGACGACATGTCGGACTCTGGCGGCCTCAACTACCTTCTCGC
GCTAACCAAGGTATGATAAGCCGCCAGAGGTTCAGCCAAACCAGCCCCGC
GTCTAGCCGCAATTTCCGAGTGCCCTACCCCGGCCGGGCCGCGAGCTGCT
GCGGCCCCGGCAGGGCGAAAACGATAATTTTGCTGGGAGCCGAGCCCTCG
AGAGCTTGGTATCCAAGTTGAACAGATGACCTTGCACGACATACGAGAGA
ATATCGGTCGATTATTGTCTTAGCTTGTTTGGGGGGAGCCAGCCAGCAGA
CCAGACGGACACTCAAACGTGTACTGTACTCGTATTCGATACGTTTGCAA
TCTACATCTCACGTCTTTTTTGTCTTCCCACCAAGAGGCCGCGAAAACCA
CTCTTCCCCCCCATACCCCCCCCCCCCACCCCCATACCGTTCACACACCA
CATCAAACCTTCCCGATCCACTCGCACCACACTCCCGACCTAGAAGACAA
TGCAGCCTCTTCGAGCGTGTGTTCGATCGTCTCGAAACAACACTCAGGGC
GGAAACAAAGCAGAGGTGAAGAAAAAACGCGGGTCGATTTCTTCCTTTCT
ACTCACCCAAGTTACATTAGTATTATTATCAGTATTAGATTATACATAAA
TCCGCACATGGATGAGATGAAATTTGGAAATGGCGCGCTTTGTGGGTGCT
GTGGCCCTCTGCGCCCTGCTTGCGTAAATTAAATAATGAAGCAAAGTTTC
GGCCACCCCGCACCGATCCCGGCTCGTTTCCCGAGAGGGCGGAGGCTGCG
CGCGCCTGCAAGCTCTAGAGAATTTTCGGCCTAAGCGTACCCCCGCGTGA
TGGGTGCGTGATTATTTGTCGCTTTGACAACTTCTCGAGCTCACGATGCC
GCCCTTCTGTCTTGAAGTACATATCATACATTCGTGAGCGCGATGTCCGC
CCGCCAGGTATAGGGGCGCTTTGCTATTTTCGAGGGAAGAATAAAAGCAA
AAGCTGGTATCATGCCACACACGCCCACCCCGCCTTTTCCCTCTCGGCGC
TGCTGCTTGCTCTCTTTTGTTTTAGAGCCAGTTACTGGGAGTGCTAGAGT
CGCAATTAATTGTTGCCAGATCTTACTTGAACGTAGTCTAGTATGTTGCT
CTGCGTTAGATTATTGCGCGCGACGCGCCCCGGCAAGATTCAATCTATCG
GCCCATCTCGCTCCCAACAAAAAATCAAATTTATACGATATTTGTCGCAC
ATTGTATTATCAATAAGTCAAAACGACAGCGTACACTTTCATCTATATTA
GACAACTTCATTACTCGTGCCCCTCCCCCACCCGTCTCCGCCCCCCCTCT
GATATATTGTGGTCGCTCGTGCATCTCCAGGACCGCTCCTGACAATCGTT
CCCTCTGTTCCCCGCACCCCCCAACGACCAATAAATAACTCAGCTATTCT
GTTTCCGCCCCCCGAATTATTTTACGGTCAGGGTGCGGATGACGTCAACA
AGCCCGCGGCTCTCCACCAGCAGCACCAGCCCTCGTCTGGCGCAGAAATG
AGAAGTGCTTGTGTCCCGACCGGCAACCACAACACCAAGGAACACGAGCG
TGCATTCACTACGCCCGCCGCCAGGCCCGCCGCTGCCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1159:13561..15499+

>mRNA_S-dermatodea_contig1159.1010.1 ID=mRNA_S-dermatodea_contig1159.1010.1|Name=mRNA_S-dermatodea_contig1159.1010.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at S-dermatodea_contig1159:13561..15499+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCACAACGAGGTCTTTCCCACTTTTTACAACAACGCAACACACAACAAA
CGTGCGCAAGTCACGTCGTCGGGGAACAAAAATAAAAAATCACTACACCA
TCACACAAGCAAAAATAATACACCCACCAGCATCTCCCGTCGCGCGACAA
GAGATGAGGAGTGGAGCCAACCCTACCAACCGCCGCCTCAGCGCCCGAGA
GAGAGCGAAGGCTTCTTCGTCTGCGACAGCGGCCCTGATGGACAGGTTCG
AGCAGGACGCGGTAGGAGGGACAGACTCAGACCGGGCCGCAGGTTATGGG
TCTGATCGTGACGACATGTCGGACTCTGGCGGCCTCAACTACCTTCTCGC
GCTAACCAAGATCACAACGAGGTCTTTCCCACTTTTTACAACAACGCAAC
ACACAACAAACGTGCGCAAGTCACGTCGTCGGGGAACAAAAATAAAAAAT
CACTACACCATCACACAAGCAAAAATAATACACCCACCAGCATCTCCCGT
CGCGCGACAAGAGATGAGGAGTGGAGCCAACCCTACCAACCGCCGCCTCA
GCGCCCGAGAGAGAGCGAAGGCTTCTTCGTCTGCGACAGCGGCCCTGATG
GACAGGTTCGAGCAGGACGCGGTAGGAGGGACAGACTCAGACCGGGCCGC
AGGTTATGGGTCTGATCGTGACGACATGTCGGACTCTGGCGGCCTCAACT
ACCTTCTCGCGCTAACCAAGGGTGCGGATGACGTCAACAAGCCCGCGGCT
CTCCACCAGCAGCACCAGCCCTCGTCTGGCGCAGAAATGAGAAGTGCTTG
TGTCCCGACCGGCAACCACAACACCAAGGAACACGAGCGTGCATTCACTA
CGCCCGCCGCCAGGCCCGCCGCTGCCGGTGCGGATGACGTCAACAAGCCC
GCGGCTCTCCACCAGCAGCACCAGCCCTCGTCTGGCGCAGAAATGAGAAG
TGCTTGTGTCCCGACCGGCAACCACAACACCAAGGAACACGAGCGTGCAT
TCACTACGCCCGCCGCCAGGCCCGCCGCTGCC
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