mRNA_S-dermatodea_contig11587.1008.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11587.1008.1
Unique NamemRNA_S-dermatodea_contig11587.1008.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11587.1008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11587contigS-dermatodea_contig11587:1829..3589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1054
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11587.1008.1prot_S-dermatodea_contig11587.1008.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11587 1931..3279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924209.2511528-UTR-S-dermatodea_contig11587:1828..19301622924209.2511528-UTR-S-dermatodea_contig11587:1828..1930Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11587 1829..1930 -
1694079094.423081-UTR-S-dermatodea_contig11587:1828..19301694079094.423081-UTR-S-dermatodea_contig11587:1828..1930Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11587 1829..1930 -
1622924209.2793221-UTR-S-dermatodea_contig11587:3279..35891622924209.2793221-UTR-S-dermatodea_contig11587:3279..3589Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11587 3280..3589 -
1694079094.4501183-UTR-S-dermatodea_contig11587:3279..35891694079094.4501183-UTR-S-dermatodea_contig11587:3279..3589Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11587 3280..3589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924209.259907-CDS-S-dermatodea_contig11587:1930..25091622924209.259907-CDS-S-dermatodea_contig11587:1930..2509Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11587 1931..2509 -
1694079094.4319856-CDS-S-dermatodea_contig11587:1930..25091694079094.4319856-CDS-S-dermatodea_contig11587:1930..2509Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11587 1931..2509 -
1622924209.2674537-CDS-S-dermatodea_contig11587:3216..32791622924209.2674537-CDS-S-dermatodea_contig11587:3216..3279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11587 3217..3279 -
1694079094.4412382-CDS-S-dermatodea_contig11587:3216..32791694079094.4412382-CDS-S-dermatodea_contig11587:3216..3279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11587 3217..3279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11587.1008.1

>prot_S-dermatodea_contig11587.1008.1 ID=prot_S-dermatodea_contig11587.1008.1|Name=mRNA_S-dermatodea_contig11587.1008.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=214bp
METPRGLVTARDIKDVPISPVAVKATKAGSSGEEAYRILVTELGRELDTR
MHGAALQRLLDFKVAEGTSFSTCLRDFKTLVRAARQSGQAIAPFQVVQST
ISMIMTVQYPLLYDMVFPHTVTRSFTCEESLMSALDLKSRSLVRATPPRA
SANKPVASSMVTPKAPSSTVAIAGSTRGARGGGGKAGAWVPASMTVNPVA
QAQPDVFSAEFPS*
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mRNA from alignment at S-dermatodea_contig11587:1829..3589-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11587.1008.1 ID=mRNA_S-dermatodea_contig11587.1008.1|Name=mRNA_S-dermatodea_contig11587.1008.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1761bp|location=Sequence derived from alignment at S-dermatodea_contig11587:1829..3589- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGGCGCGCGCGTTCCGTTCATCGACGATCGTAATCGTCTCGAAACTTG
GGCGCACTGTACCGCATATCAGCTGTTAAGCTCAGCCTCTATAAATGAGA
ATGTGCGGTATAAAGCAAGGAAAGTGCGGCGAGCTTGCCAGGATGACGAA
GTCATACCCAATCCGGATTTGACGGTGGGTCAACTGCGAGACCTCATGGA
GAACGACAAAATATCACTCGAGTCATACCACTCGATCAAGTCCTTGTTAG
TGTCCCTCCTCAAGTGGCAAGACGAGCCGGAACACAGCGGAGAACAGAAG
AAACGTGGACATGGAGACTCCTCGTGGGCTGGTCACGGCTCGGGACATCA
AGGACGTCCCCATCAGTCCCGTGGTGAGTTTGATACTGACGATTACAAGT
ATGACGGTGCGTCATTCCCAATGTTGCAAACACGCTCCGAATCGCCGATG
CGATATGCACGAGAACACTACGTGCCTGCGCCATCCCATCTTCATATGCA
ACAGTGTGATCGTCGCCTTGAGCCACCTGAACCGTCTGTAACAAACCGTT
CGTCATCATCCTCTGTGCGCGAGAACCCGATCGCTCCGTTTACACAGCCA
ACTGCGTTGCGTGCGCCGCCTGCTGGCGGTGCCGATCCATTTTGTGCTGA
ACCCGATGTTGAAGATGCGATTGAAACTGAAAGTGTTGAAGTTTTACCGC
CTGACTTGCCTTTGTCATCCGAGACGGCCCGCGCTCGTGCTGCTGCTGCA
GCCGAGTCTGCCGCCGCCGCCGATGCAGAGGTTGAAACACGCATGTGCCG
TTTGTACCGCAGTCTCAGACCCAAGGACCTGCTGAACGTACGCCCATTCT
TGCCCCTTCCGCAAGATGATTCGGGTCGTGTTTTTCAATCATACATGAAT
TCTCTTGATGCGGCTTTGGAAGACATCTTGCTTCAAGATGAACGATCAGA
TGGTATTAGCAGTGTACATTGGGCCCGAGACTGGCACGTTCCACTGCTCA
AATGCTTGCATGCATCCGTAAACCCAACCGCTCATGCAGCGCCCGAAATG
ACTGTTATGATCAATGCTTGCTTCGATCAGGCCGTAAAAGCCACTAAGGC
CGGTAGCTCCGGCGAGGAGGCCTATCGCATCTTGGTGACTGAACTGGGCC
GCGAGCTGGACACGCGCATGCATGGCGCAGCACTGCAACGCCTGCTGGAT
TTTAAGGTGGCCGAGGGTACTTCATTTTCGACCTGTCTGCGAGATTTTAA
GACGCTGGTCCGTGCTGCCAGGCAGAGCGGCCAAGCGATAGCCCCCTTTC
AGGTTGTGCAGTCAACGATCTCGATGATCATGACCGTACAGTATCCTTTG
CTTTATGACATGGTATTCCCACATACCGTTACGCGCTCGTTCACTTGCGA
AGAGAGCTTGATGAGCGCCCTTGATTTGAAGTCGCGCAGTTTGGTGCGAG
CCACGCCTCCCCGGGCATCTGCGAATAAGCCAGTAGCGAGCTCAATGGTT
ACCCCAAAGGCCCCATCCTCGACTGTTGCTATAGCGGGTAGCACTCGCGG
TGCGCGTGGGGGTGGAGGTAAAGCAGGAGCTTGGGTGCCAGCGTCTATGA
CAGTAAATCCAGTTGCGCAAGCGCAGCCCGATGTTTTTTCTGCAGAGTTT
CCTTCATGACCGGCTTCTGACGAGACGTGGGATGGAGTTTATAATGTTAA
TTTTAAGTCTGACGACCCTCCTCTTTTTGCACGCTTCACGGACATGGGAC
ATCGCCGTGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11587:1829..3589-

>mRNA_S-dermatodea_contig11587.1008.1 ID=mRNA_S-dermatodea_contig11587.1008.1|Name=mRNA_S-dermatodea_contig11587.1008.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at S-dermatodea_contig11587:1829..3589- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGACTCCTCGTGGGCTGGTCACGGCTCGGGACATCAAGGACGTCCC
CATCAGTCCCGTGATGGAGACTCCTCGTGGGCTGGTCACGGCTCGGGACA
TCAAGGACGTCCCCATCAGTCCCGTGGCCGTAAAAGCCACTAAGGCCGGT
AGCTCCGGCGAGGAGGCCTATCGCATCTTGGTGACTGAACTGGGCCGCGA
GCTGGACACGCGCATGCATGGCGCAGCACTGCAACGCCTGCTGGATTTTA
AGGTGGCCGAGGGTACTTCATTTTCGACCTGTCTGCGAGATTTTAAGACG
CTGGTCCGTGCTGCCAGGCAGAGCGGCCAAGCGATAGCCCCCTTTCAGGT
TGTGCAGTCAACGATCTCGATGATCATGACCGTACAGTATCCTTTGCTTT
ATGACATGGTATTCCCACATACCGTTACGCGCTCGTTCACTTGCGAAGAG
AGCTTGATGAGCGCCCTTGATTTGAAGTCGCGCAGTTTGGTGCGAGCCAC
GCCTCCCCGGGCATCTGCGAATAAGCCAGTAGCGAGCTCAATGGTTACCC
CAAAGGCCCCATCCTCGACTGTTGCTATAGCGGGTAGCACTCGCGGTGCG
CGTGGGGGTGGAGGTAAAGCAGGAGCTTGGGTGCCAGCGTCTATGACAGT
AAATCCAGTTGCGCAAGCGCAGCCCGATGTTTTTTCTGCAGAGTTTCCTT
CATGAGCCGTAAAAGCCACTAAGGCCGGTAGCTCCGGCGAGGAGGCCTAT
CGCATCTTGGTGACTGAACTGGGCCGCGAGCTGGACACGCGCATGCATGG
CGCAGCACTGCAACGCCTGCTGGATTTTAAGGTGGCCGAGGGTACTTCAT
TTTCGACCTGTCTGCGAGATTTTAAGACGCTGGTCCGTGCTGCCAGGCAG
AGCGGCCAAGCGATAGCCCCCTTTCAGGTTGTGCAGTCAACGATCTCGAT
GATCATGACCGTACAGTATCCTTTGCTTTATGACATGGTATTCCCACATA
CCGTTACGCGCTCGTTCACTTGCGAAGAGAGCTTGATGAGCGCCCTTGAT
TTGAAGTCGCGCAGTTTGGTGCGAGCCACGCCTCCCCGGGCATCTGCGAA
TAAGCCAGTAGCGAGCTCAATGGTTACCCCAAAGGCCCCATCCTCGACTG
TTGCTATAGCGGGTAGCACTCGCGGTGCGCGTGGGGGTGGAGGTAAAGCA
GGAGCTTGGGTGCCAGCGTCTATGACAGTAAATCCAGTTGCGCAAGCGCA
GCCCGATGTTTTTTCTGCAGAGTTTCCTTCATGA
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