mRNA_S-dermatodea_contig11586.1007.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11586.1007.1
Unique NamemRNA_S-dermatodea_contig11586.1007.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11586.1007.1 vs. uniprot
Match: D7FV32_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV32_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 3.930e-46
Identity = 93/154 (60.39%), Postives = 108/154 (70.13%), Query Frame = 1 
Query:    1 IPQGPLDLVMIAMALLVGIPLLRLWWYHVQTILGKGQTTNEDMRGVYQYHPNQYNKGCMKNSYSLLCAAIPPSRLPDLSELVYVNEPLSARGSHS-----PRDSRSSSWISPEGGFTFMGEEDGEYEHRRRWAQKARQARAESRRNCIGGSSER 447
            +  GP+DL+M AMALLVGIPLLRLWWYH+QTIL KGQTTNEDMR VY+ H N Y+KGC +NS SLLCA  P SRLPDLSE VYVNEPL++RGS +      R SR+ SWISP GGF F+G+ DG+   +RR            R    GGSS R
Sbjct:  249 VASGPVDLLMTAMALLVGIPLLRLWWYHLQTILCKGQTTNEDMRAVYRNHHNSYHKGCWQNSVSLLCAPAPRSRLPDLSERVYVNEPLASRGSGTRWGDGERGSRTFSWISPAGGFGFLGDSDGDCSDQRRQXXXXXXXGRPPRVLSAGGSSRR 402
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BLAST of mRNA_S-dermatodea_contig11586.1007.1 vs. uniprot
Match: A0A6H5J901_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J901_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 4.040e-45
Identity = 84/125 (67.20%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:    1 IPQGPLDLVMIAMALLVGIPLLRLWWYHVQTILGKGQTTNEDMRGVYQYHPNQYNKGCMKNSYSLLCAAIPPSRLPDLSELVYVNEPLSARGSHS-----PRDSRSSSWISPEGGFTFMGEEDGE 360
            +  GP+DL+M AMALLVGIPLLRLWWYH+QTIL KGQTTNEDMR VY+ H N Y+KGC +NS SLLCA  P SRLPDLSE VY NEPL++RGS +      R SR+ SWISP GGF F+G+ DG+
Sbjct:  320 VASGPVDLLMTAMALLVGIPLLRLWWYHLQTILCKGQTTNEDMRAVYRNHHNSYHKGCWQNSVSLLCAPAPRSRLPDLSERVYANEPLASRGSGTRWGDGERGSRTFSWISPAGGFGFLGDSDGD 444
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BLAST of mRNA_S-dermatodea_contig11586.1007.1 vs. uniprot
Match: A0A7R9YF71_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF71_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.060e-11
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   61 LLRLWWYHVQTILGKGQTTNEDMRGVYQYHPNQYNKGCMKNSYSLLCAAIPPSRLPDLSELVYVNEPLSAR 273
            LL LW YH++ ++  GQTTNE +RGV+ +  N ++ GCM N  S+L   IPPS L D+SELV V     AR
Sbjct:   80 LLSLWLYHLR-LMAIGQTTNEAVRGVFDFRTNPHDHGCMNNISSVLQTRIPPSGLADMSELVTVQGSAQAR 149
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BLAST of mRNA_S-dermatodea_contig11586.1007.1 vs. uniprot
Match: A0A7S1TV38_9STRA (Palmitoyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV38_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.340e-8
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:   61 LLRLWWYHVQTILGKGQTTNEDMRGVYQYHPNQYNKGCMKNSYSLLCAAIPPSRLPDLSELVYVNEPLSARG 276
            LL LW YH++ +L  GQTTNE +RG++ +  N  + GCM N   +    +PPS LP L ELV    P +A G
Sbjct:  197 LLSLWLYHLR-LLSIGQTTNEAVRGIFDFRDNPNDHGCMNNIKHVFMTKVPPSVLPPLEELVVPCTPGAAPG 267
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11586.1007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FV32_ECTSI3.930e-4660.39Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5J901_9PHAE4.040e-4567.20Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A7R9YF71_9STRA7.060e-1149.30Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1TV38_9STRA2.340e-844.44Palmitoyltransferase n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11586contigS-dermatodea_contig11586:4956..6812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue1.1e-37
Seed eggNOG ortholog2880.D7FV32
KEGG rclassRC00741,RC01491,RC01492,RC03042
KEGG koko:K04035,ko:K16675,ko:K18932,ko:K20027,ko:K20030,ko:K20471
KEGG ReactionR06265,R06266,R06267,R10068
KEGG Pathwayko00860,ko01100,ko01110,ko04391,map00860,map01100,map01110,map04391
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005886,GO:0007275,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0012505,GO:0016020,GO:0016049,GO:0021700,GO:0022622,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030154,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035618,GO:0040007,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0060560,GO:0071695,GO:0071944,GO:0080147,GO:0090558,GO:0090627,GO:0097708,GO:0099402,GO:0120025,GO:1905392
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
EC1.14.13.81,2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-12_004980.1
Exons2
Model size474
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11586.1007.1prot_S-dermatodea_contig11586.1007.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11586 4956..6785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924209.1987066-CDS-S-dermatodea_contig11586:4955..52961622924209.1987066-CDS-S-dermatodea_contig11586:4955..5296Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11586 4956..5296 -
1694079094.395403-CDS-S-dermatodea_contig11586:4955..52961694079094.395403-CDS-S-dermatodea_contig11586:4955..5296Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11586 4956..5296 -
1622924209.2093148-CDS-S-dermatodea_contig11586:6679..67851622924209.2093148-CDS-S-dermatodea_contig11586:6679..6785Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11586 6680..6785 -
1694079094.4062755-CDS-S-dermatodea_contig11586:6679..67851694079094.4062755-CDS-S-dermatodea_contig11586:6679..6785Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11586 6680..6785 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924209.217614-UTR-S-dermatodea_contig11586:6785..68121622924209.217614-UTR-S-dermatodea_contig11586:6785..6812Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11586 6786..6812 -
1694079094.414432-UTR-S-dermatodea_contig11586:6785..68121694079094.414432-UTR-S-dermatodea_contig11586:6785..6812Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11586 6786..6812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11586.1007.1

>prot_S-dermatodea_contig11586.1007.1 ID=prot_S-dermatodea_contig11586.1007.1|Name=mRNA_S-dermatodea_contig11586.1007.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=149bp
MIAMALLVGIPLLRLWWYHVQTILGKGQTTNEDMRGVYQYHPNQYNKGCM
KNSYSLLCAAIPPSRLPDLSELVYVNEPLSARGSHSPRDSRSSSWISPEG
GFTFMGEEDGEYEHRRRWAQKARQARAESRRNCIGGSSERGRYDDLHPS
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mRNA from alignment at S-dermatodea_contig11586:4956..6812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11586.1007.1 ID=mRNA_S-dermatodea_contig11586.1007.1|Name=mRNA_S-dermatodea_contig11586.1007.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1857bp|location=Sequence derived from alignment at S-dermatodea_contig11586:4956..6812- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATACCCCAAGGTCCGCTCGACCTTGTGATGATCGCGATGGCTCTCCTGGT
GGGTATCCCGCTCTTGCGGCTGTGGTGGTACCACGTGCAGACCATCCTCG
GCAAGGGGCAAACCACGAACGAGGACATGCGAGGTGAGCCCCCCCTGAAG
CAACAATTTAATATTTAGAAAACACAGAGCGAGCGTTGGGGGTCTAAATA
TTTTTGTAGACGAAAAGATGGCCCAAGCTAGCTATGATATCTCAGCGGAG
GTCTAGGTTATGGTTATGTGTGACGCTGTGGGGTCGCGTTGTAGGAATGG
AACGTTAACATGCTGGGTAAGGGTGTGGCGCTACGATACAATTGAAACGT
AACTTCTGGGATTGGAGTGTCTCCAGCTGTGGGATTTTTGTGTGTGCCCC
CCGAAGACAGTAAATATTCATGAACACAGAACTATCATAGCATTGGGGTC
AAACCAACCTTTTTGGTGGAGGAAAAAAGAAGCCCACCACAACCCAAATC
AGAAGACCGCGAAAAAAGCACAACACGCAGCCAAACAACAAAAAAAAAGA
TCCGACAACAAACCAATGAACAACACCATAACAACAACCNNNNNNNNNNC
CTGTGTGGGGTTTTTTGGTTGTACCCCCCCAAAAAATAAACTCATCTAAA
AAAAAAAATATTTGAACATTTGGGGCCAAACCACTCTTTTTTGGGGGTAA
AAAAAAAAGCCCCCCCCCCCCCCCCCCCCCTAAAAAATACGATGATTTCA
AGAACATAAGAGCTAGCGTTGGGGTCCTACCTTTTCAAAAGGGAAGCCCC
CCCCCCCTCCCACCCCCCGTCTCCCTCGCAACCGCGAAGCACTCGCACCT
TCTGCCGGCGTCAGTCACTCCCTCCCGCGTACCTGGCTAGGCTTGGTCGT
ATCATAGACCGACCCGCCCGGGTGGTTTTTCGCTTGTAAAGGTTGCTGTG
CGGTGTGGAGAGAGAGCGCGCGAGAGCGAGCGCCGGGATCGATCGATCAA
TCGATGGGCACGGGATGGGATGGAATGAAATGGGATGGGATGGGATGGGA
TGGGAGGGGATGCCGTGACGTTTTTCGGGGAAGCTCGGCACAAGCTTTGT
TTATGTGTGTGTACCCGGTGTTTTTACAAGGCTGTCCACCCTGTTTTGAT
TCCGCAATATCTTGTGTTATCTTTCTTTCGTGCTGATGGAGTTTTGTCAT
ATTTTGGTGGCTTGTCTCAAAACTCCTCCCGCATAATAGTACATGTCCTG
TATAATAGTATCCCAAGAACTACTGTTTGTACTGTACTGTACTGTACTGT
ACCCCCCTCCTCCCCCCCCCCTCCCACCCCCCACCCGCCTCCCGGGGGCG
TTATGCATTATTTAACACCACTTACGTTGGATTTCAACATAATAATATCT
TGCCCTTTTGTCCGTGTGCGCCCGCCCCGCCCCTATCGCTCGCTCGCAAC
ACTACTCCCCCTCCTCCTCCTCATCCGGCTGCTCTACTACATATACACTA
TACCATATACACCAAGGCGTCTACCAGTATCACCCCAACCAGTACAACAA
GGGCTGCATGAAGAACTCCTACTCCCTGCTGTGTGCCGCAATCCCCCCGT
CCCGGCTCCCGGACCTGTCCGAACTGGTGTACGTCAACGAGCCCCTGTCC
GCCCGCGGTAGTCACAGCCCGCGCGATTCCCGCTCCTCGTCGTGGATCTC
TCCCGAGGGCGGGTTCACGTTCATGGGAGAGGAGGACGGAGAGTACGAGC
ACCGGCGGCGATGGGCGCAGAAGGCGCGGCAGGCCAGGGCGGAGAGCAGG
CGTAACTGCATAGGGGGCTCCTCCGAGCGGGGGAGGTACGACGATTTGCA
CCCGTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11586:4956..6812-

>mRNA_S-dermatodea_contig11586.1007.1 ID=mRNA_S-dermatodea_contig11586.1007.1|Name=mRNA_S-dermatodea_contig11586.1007.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at S-dermatodea_contig11586:4956..6812- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCGCGATGGCTCTCCTGGTGGGTATCCCGCTCTTGCGGCTGTGGTG
GTACCACGTGCAGACCATCCTCGGCAAGGGGCAAACCACGAACGAGGACA
TGCGAGATGATCGCGATGGCTCTCCTGGTGGGTATCCCGCTCTTGCGGCT
GTGGTGGTACCACGTGCAGACCATCCTCGGCAAGGGGCAAACCACGAACG
AGGACATGCGAGGCGTCTACCAGTATCACCCCAACCAGTACAACAAGGGC
TGCATGAAGAACTCCTACTCCCTGCTGTGTGCCGCAATCCCCCCGTCCCG
GCTCCCGGACCTGTCCGAACTGGTGTACGTCAACGAGCCCCTGTCCGCCC
GCGGTAGTCACAGCCCGCGCGATTCCCGCTCCTCGTCGTGGATCTCTCCC
GAGGGCGGGTTCACGTTCATGGGAGAGGAGGACGGAGAGTACGAGCACCG
GCGGCGATGGGCGCAGAAGGCGCGGCAGGCCAGGGCGGAGAGCAGGCGTA
ACTGCATAGGGGGCTCCTCCGAGCGGGGGAGGTACGACGATTTGCACCCG
TCCGCGTCTACCAGTATCACCCCAACCAGTACAACAAGGGCTGCATGAAG
AACTCCTACTCCCTGCTGTGTGCCGCAATCCCCCCGTCCCGGCTCCCGGA
CCTGTCCGAACTGGTGTACGTCAACGAGCCCCTGTCCGCCCGCGGTAGTC
ACAGCCCGCGCGATTCCCGCTCCTCGTCGTGGATCTCTCCCGAGGGCGGG
TTCACGTTCATGGGAGAGGAGGACGGAGAGTACGAGCACCGGCGGCGATG
GGCGCAGAAGGCGCGGCAGGCCAGGGCGGAGAGCAGGCGTAACTGCATAG
GGGGCTCCTCCGAGCGGGGGAGGTACGACGATTTGCACCCGTCC
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