prot_S-dermatodea_contig11562.997.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11562.997.1
Unique Nameprot_S-dermatodea_contig11562.997.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length522
Homology
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BLAST of mRNA_S-dermatodea_contig11562.997.1 vs. uniprot
Match: D8LM12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM12_ECTSI)

HSP 1 Score: 508 bits (1309), Expect = 1.580e-172
Identity = 335/531 (63.09%), Postives = 367/531 (69.11%), Query Frame = 0 
Query:    1 QVFWLVLEVAAGNEDSRGYVRLSSVACYALGLHAGGHILL--FHLHRRGLSHHALEFLLDLVTDVVGFAWINLAEEMLAQVFLVTARTTLLYAVLAFAASLGAMEIGSCLRGFLDCPLDFDETANQFDAGSFALPTSWLVTQAVHIALYGFFYRTSAAGGQGGRDNEGGE---VDVRLAASLFLLVYALLCSTLAARVLGGTVAAAAVADNNRGDEGFHGAGHTVEG-----GDRSELMIRAVEAGGPFTAAQASDAV-------------ASPPAQGGGPP---RGGGLGRTDKGVPLGGPPDPSLFSSDGDGGSXXXXXXXXXXXXXXXXXXXXXXXXAAETNRARRGSLRRGLKAYMRITVGMMVGWAYNLWGQVEFRQEELEFRFGPALGATVYAALSTALGVCIMVRGADKLDGRGPDRVAARGDVYDV---------GLGYGDEERGRAQEKEAERYRGALRAFHAKRMLVVVGGVSLMVGWAWEEAIDLMLEGLVGDSADAGMVVAKLALAALSMSVVLGRELR 496
            Q FWL+LE  AGNEDSRGYVRLSSVACYAL LHAGGH+LL  +   RR LSHHALEFLLDLVTDVVGFAWIN+AEEMLAQVF V A+TTL+YA LAFAASLGAME+GS  R  LD P+ F+ETANQFDAGSFALPTSWLVTQ VHI LYGFFYRT  AGGQGGR  +G E   VDVRLAASLFLL YALLCS LA RV+GGTVAA                  T        G RS+L+IRA+ + G  TAAQASDA              +S P+ GGG     R GG    D G        PS  +  GDGG         XXXXXXXXXXXXXX    E   ARR SLRRGLKAYMR+TVGMMVGWAYNLWGQVEFRQEELEFRFGPALGA  YAALSTALGVC+MVRGADKL G    +  A G V D          G GY   ER     +E  R   A+R++HA+R+LVVVGGVSL+VGWAWEEA DL LEGL+GD ADA  VVAKL+LA  +  VVLGRE+R
Sbjct:   37 QAFWLILEATAGNEDSRGYVRLSSVACYALALHAGGHLLLHRYSSGRRKLSHHALEFLLDLVTDVVGFAWINVAEEMLAQVFEVRAKTTLVYAALAFAASLGAMELGSLARSLLDWPVGFEETANQFDAGSFALPTSWLVTQGVHIGLYGFFYRT--AGGQGGRGGDGEEDDVVDVRLAASLFLLAYALLCSALATRVIGGTVAAXXXXXXXXXXXXXXXXXLTRSNSGGSTGSRSDLVIRAISSYG-VTAAQASDAAXXXXXXXXGDVEASSTPSCGGGRNTSYREGGGDVADVG--------PSNSTKVGDGGGERGAAPLAXXXXXXXXXXXXXXAAGGED--ARRDSLRRGLKAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGAAAYAALSTALGVCVMVRGADKLAGSNRRKNGAGGAVNDSVGGALGSRPGGGYFHVERPEEDGEETRRRDAAVRSYHARRLLVVVGGVSLVVGWAWEEAFDLALEGLLGDEADAATVVAKLSLAVAATVVVLGREVR 554
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11562.997.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM12_ECTSI1.580e-17263.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 332..349
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 70..74
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 437..455
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 456..474
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 389..436
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 41..51
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 475..492
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 369..388
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..69
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..99
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 100..331
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 493..522
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 350..368
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..40
NoneNo IPR availableTMHMMTMhelixcoord: 49..71
NoneNo IPR availableTMHMMTMhelixcoord: 173..195
NoneNo IPR availableTMHMMTMhelixcoord: 129..151
NoneNo IPR availableTMHMMTMhelixcoord: 329..348
NoneNo IPR availableTMHMMTMhelixcoord: 86..108
NoneNo IPR availableTMHMMTMhelixcoord: 441..463
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 363..385
NoneNo IPR availableTMHMMTMhelixcoord: 473..492

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11562contigS-dermatodea_contig11562:177..3692 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11562.997.1mRNA_S-dermatodea_contig11562.997.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11562 177..3692 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11562.997.1 ID=prot_S-dermatodea_contig11562.997.1|Name=mRNA_S-dermatodea_contig11562.997.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=522bp
QVFWLVLEVAAGNEDSRGYVRLSSVACYALGLHAGGHILLFHLHRRGLSH
HALEFLLDLVTDVVGFAWINLAEEMLAQVFLVTARTTLLYAVLAFAASLG
AMEIGSCLRGFLDCPLDFDETANQFDAGSFALPTSWLVTQAVHIALYGFF
YRTSAAGGQGGRDNEGGEVDVRLAASLFLLVYALLCSTLAARVLGGTVAA
AAVADNNRGDEGFHGAGHTVEGGDRSELMIRAVEAGGPFTAAQASDAVAS
PPAQGGGPPRGGGLGRTDKGVPLGGPPDPSLFSSDGDGGSDGEGSGEAAP
LQAAAALFAAAAVGAAETNRARRGSLRRGLKAYMRITVGMMVGWAYNLWG
QVEFRQEELEFRFGPALGATVYAALSTALGVCIMVRGADKLDGRGPDRVA
ARGDVYDVGLGYGDEERGRAQEKEAERYRGALRAFHAKRMLVVVGGVSLM
VGWAWEEAIDLMLEGLVGDSADAGMVVAKLALAALSMSVVLGRELRAGAE
HGGHEGIGGAGHSNGFVDGGGG
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