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Homology
BLAST of mRNA_S-dermatodea_contig11562.997.1 vs. uniprot
Match: D8LM12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM12_ECTSI) HSP 1 Score: 508 bits (1309), Expect = 1.580e-172 Identity = 335/531 (63.09%), Postives = 367/531 (69.11%), Query Frame = 1
Query: 1 QVFWLVLEVAAGNEDSRGYVRLSSVACYALGLHAGGHILL--FHLHRRGLSHHALEFLLDLVTDVVGFAWINLAEEMLAQVFLVTARTTLLYAVLAFAASLGAMEIGSCLRGFLDCPLDFDETANQFDAGSFALPTSWLVTQAVHIALYGFFYRTSAAGGQGGRDNEGGE---VDVRLAASLFLLVYALLCSTLAARVLGGTVAAAAVADNNRGDEGFHGAGHTVEG-----GDRSELMIRAVEAGGPFTAAQASDAV-------------ASPPAQGGGPP---RGGGLGRTDKGVPLGGPPDPSLFSSDGDGGSXXXXXXXXXXXXXXXXXXXXXXXXAAETNRARRGSLRRGLKAYMRITVGMMVGWAYNLWGQVEFRQEELEFRFGPALGATVYAALSTALGVCIMVRGADKLDGRGPDRVAARGDVYDV---------GLGYGDEERGRAQEKEAERYRGALRAFHAKRMLVVVGGVSLMVGWAWEEAIDLMLEGLVGDSADAGMVVAKLALAALSMSVVLGRELR 1488
Q FWL+LE AGNEDSRGYVRLSSVACYAL LHAGGH+LL + RR LSHHALEFLLDLVTDVVGFAWIN+AEEMLAQVF V A+TTL+YA LAFAASLGAME+GS R LD P+ F+ETANQFDAGSFALPTSWLVTQ VHI LYGFFYRT AGGQGGR +G E VDVRLAASLFLL YALLCS LA RV+GGTVAA T G RS+L+IRA+ + G TAAQASDA +S P+ GGG R GG D G PS + GDGG XXXXXXXXXXXXXX E ARR SLRRGLKAYMR+TVGMMVGWAYNLWGQVEFRQEELEFRFGPALGA YAALSTALGVC+MVRGADKL G + A G V D G GY ER +E R A+R++HA+R+LVVVGGVSL+VGWAWEEA DL LEGL+GD ADA VVAKL+LA + VVLGRE+R
Sbjct: 37 QAFWLILEATAGNEDSRGYVRLSSVACYALALHAGGHLLLHRYSSGRRKLSHHALEFLLDLVTDVVGFAWINVAEEMLAQVFEVRAKTTLVYAALAFAASLGAMELGSLARSLLDWPVGFEETANQFDAGSFALPTSWLVTQGVHIGLYGFFYRT--AGGQGGRGGDGEEDDVVDVRLAASLFLLAYALLCSALATRVIGGTVAAXXXXXXXXXXXXXXXXXLTRSNSGGSTGSRSDLVIRAISSYG-VTAAQASDAAXXXXXXXXGDVEASSTPSCGGGRNTSYREGGGDVADVG--------PSNSTKVGDGGGERGAAPLAXXXXXXXXXXXXXXAAGGED--ARRDSLRRGLKAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGAAAYAALSTALGVCVMVRGADKLAGSNRRKNGAGGAVNDSVGGALGSRPGGGYFHVERPEEDGEETRRRDAAVRSYHARRLLVVVGGVSLVVGWAWEEAFDLALEGLLGDEADAATVVAKLSLAVAATVVVLGREVR 554
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-14_002440.1 |
| Exons | 4 |
| Model size | 1566 |
| Cds size | 1566 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11562.997.1 >prot_S-dermatodea_contig11562.997.1 ID=prot_S-dermatodea_contig11562.997.1|Name=mRNA_S-dermatodea_contig11562.997.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=522bp
QVFWLVLEVAAGNEDSRGYVRLSSVACYALGLHAGGHILLFHLHRRGLSH
HALEFLLDLVTDVVGFAWINLAEEMLAQVFLVTARTTLLYAVLAFAASLG
AMEIGSCLRGFLDCPLDFDETANQFDAGSFALPTSWLVTQAVHIALYGFF
YRTSAAGGQGGRDNEGGEVDVRLAASLFLLVYALLCSTLAARVLGGTVAA
AAVADNNRGDEGFHGAGHTVEGGDRSELMIRAVEAGGPFTAAQASDAVAS
PPAQGGGPPRGGGLGRTDKGVPLGGPPDPSLFSSDGDGGSDGEGSGEAAP
LQAAAALFAAAAVGAAETNRARRGSLRRGLKAYMRITVGMMVGWAYNLWG
QVEFRQEELEFRFGPALGATVYAALSTALGVCIMVRGADKLDGRGPDRVA
ARGDVYDVGLGYGDEERGRAQEKEAERYRGALRAFHAKRMLVVVGGVSLM
VGWAWEEAIDLMLEGLVGDSADAGMVVAKLALAALSMSVVLGRELRAGAE
HGGHEGIGGAGHSNGFVDGGGG back to topmRNA from alignment at S-dermatodea_contig11562:177..3692+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11562.997.1 ID=mRNA_S-dermatodea_contig11562.997.1|Name=mRNA_S-dermatodea_contig11562.997.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3516bp|location=Sequence derived from alignment at S-dermatodea_contig11562:177..3692+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGTTTTGGCTCGTCTTGGAAGTTGCTGCCGGAAACGAAGACAGCCG
CGGATACGTTCGGCTCTCGAGCGTGGCGTGCTACGCTCTCGGGCTGCACG
CAGGGGGGCACATTCTCCTCTTCCACCTCCATCGCCGGGGGCTGAGCCAC
CACGCTCTCGAGTTTCTTCTCGACCTCGTGACGGACGTGGTGGGGTTCGC
TTGGATCAACCTGGCCGAGGAGATGCTGGCACAGGTATGGCAAAATAGGC
GCAGTTGTGGTTTTTGCGCGGGCGATGTCTGGCTGCCGTGACCGTTGCAG
TTTTCGCGCGTGGTCTAGGGCGGCCAAGCAGGCGGGCAGCGGACAATCGC
GCAAGTTGCGCTGCGTGCTTCGCACTCTTCTCGTGCGGGGGAGATGTTTA
TTTTCGAGCGGCGAGGGGGGGGGGCTGCATAGCAATGCTTCGGTTCGGCG
TGCGCCGGGTGGCGAGCGCCAAGCGGGGCCGCGGGAGGATCATGGGCGCG
CGCGCGAAATCGTGGTCGTGCAGGAAATATCTCGTGCTTTGATCGACGAG
GGAGAGAACGGCCTTAGACCCTATTAATGTTGTATTCTTGTATTTTTTCC
GAGTCCCACCAGCTTGGGCAGAGCGCTGGTTAGATGCGCGCTATGATATG
CATACGTAGGCATTTGGTGTTCGTGCAAAGTGTTGAGGTTTTAGAGTTTC
CCCTGTATGCCATTTGTTTTGTTTTTGTACGTTTAGAAATGCCCTGCCTG
TTCGTTTTCGTACGCACATGCATGCTTCTGACACGCTTACATGGGTAGCA
AGGTCGCAGAATACCCGGGTGGCGTGGTGGGTGGCAAAATATTCAAGTGA
CGGTTGCGCAGGGGTTTCCATTTTTCTTCCGTGCATTCTAACCTCTAAAC
CTTCCTTTCCTTGTTTCAGGACGAAAATTCCGGTTGGCCTCGAAAAATTA
GTTGTATTGGTTTTTGCATGAGAGATAATCCTGTGCCATGTTACACAATA
GCACGCGGGTAGTTGCCGCACGCTTGTGTTTTAGCTCTTACCACCGCAAG
ACCGCGTTTCGTAATCCTTTGGGTAGGAGACACCGAGGTCGATCTATCTC
CCAGGAAAAACTCGCTACATTGCCAACAACACGGCCAGAAACCGCCGCCG
GCCTAGACGGGGACACGCGCGCTGGCAAAATCGCAGGCAACAACCTGAAC
CATGCCTCTGGCCGCTGGGGGGCGTGTGCAGCGGCTCTTGGTGCCGTGAG
AAGAAAAAAAAACGCGCACGTTGGCATCTGTGTTGACCTGACCCACCTCT
TCCCTTCTGATATCTCACATATCACATGTATCACCACCCGCGCGCTTCCG
CCTCATCCTTCCCGCCCGTGTTTCTCCAGGTGTTCCTCGTAACAGCGAGG
ACAACGCTGCTGTACGCGGTGCTGGCGTTTGCCGCAAGCTTGGGGGCGAT
GGAAATCGGCTCGTGCCTTAGGGGGTTCCTGGATTGCCCCCTGGATTTCG
ACGAGACCGCCAATCAGTTCGACGCGGGCTCGTTCGCTCTCCCGACCAGG
TTCGTTTTTTTCAGCACTGCGGTGGCAGCTGCTTTCCTACGCGCTACCCC
ATCCATGAGAAGTGCGTTCGTTGCATGCAGAAGTGGAATCTCTGCACAGG
TTACCGAGAGGCGAGGGAATTCCTCCCGTATGACTGTATCCGATCCTGCG
AAGTCGAAATCTCGCGGGTATTGTGTGTTCCTTCCCGCAGAGGCGGTGGC
GCCACGTACGGCACGCACGCGTAAGATTGGCGCGCTTGCCGTCGACTCTG
TAGCCCTGCCGCGCACGCCGCGGAACAACCCTTGGCGAAGCACTCGCACA
CCGCACAGAAGTGGGATCGACGACGCACACTCGCCAGTGACCCCGGGCCA
CCGATTTCAAGATACCACAGGTTGCAATGGGGCTTGCCCACAATTCTGTC
CGTCTCGGCCTCATTCGGCTCTTCCTCTCTACCACAATGGTTATGCACTC
CTTACCCCGGCTGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CACACCCCCGCGCCCCTCCAACCCCCCCCCCCTTCCTCTGCTCACCGGCG
TGCTTTTTTTCCCACNNNNNNNNNNTCCTATGGTGCTTTCCCACAATTCC
TCTCGTTTCGGCCGCTTTCGGCCCTTCCTCTCTCCCCCAATGGTTATGCC
CTCCTTCCCCCCGCTCACCCCCCCCCCCCCCCCGCCCCCTCCGCCCATCC
AAACGCTGCAGCTGGCTCGTAACCCAGGCCGTGCATATCGCGCTCTACGG
GTTCTTTTATCGCACCAGCGCGGCCGGCGGACAAGGGGGGAGGGACAACG
AAGGCGGCGAGGTCGACGTGCGCCTAGCCGCGTCCCTTTTCCTTCTCGTC
TACGCCCTGCTGTGCTCGACGCTGGCCGCACGCGTTCTCGGCGGAACGGT
GGCGGCCGCGGCTGTGGCCGACAACAACAGGGGCGACGAAGGCTTTCACG
GCGCCGGCCATACTGTAGAAGGCGGGGACCGAAGCGAGCTGATGATCCGG
GCGGTCGAAGCTGGAGGTCCTTTCACCGCAGCCCAGGCGTCGGACGCCGT
AGCCTCGCCTCCTGCGCAAGGCGGGGGACCCCCCCGGGGGGGGGGGCTCG
GGCGCACGGACAAGGGCGTCCCGCTAGGGGGGCCTCCCGACCCGTCTCTG
TTCAGCAGTGACGGGGATGGCGTGACTACCGCCCGCTCTGCTTCGAACAG
CCGCAGCGCAACGCTTGGAGGGGGCAGAGAGGCGCGAGGAGCGCGTCGTC
CACCGGGCGAGGAGGGGAGCGACGGTGAGGGCAGCGGAGAAGCGGCACCC
CTGCAGGCAGCGGCGGCGCTATTCGCGGCGGCGGCGGTGGGGGCGGCGGA
GACCAATCGGGCTCGGCGTGGGTCCCTCCGCCGAGGCCTGAAAGCCTACA
TGAGGATCACCGTCGGGATGATGGTGGGCTGGGCGTACAACCTGTGGGGC
CAGGTGGAATTCCGACAGGAGGAGCTCGAGTTCCGGTTCGGGCCGGCCCT
GGGCGCTACCGTATACGCCGCCCTCAGCACCGCGCTCGGGGTGTGCATCA
TGGTGCGCGGAGCGGACAAACTGGATGGCAGGGGACCCGATCGCGTGGCG
GCGCGCGGAGACGTGTACGACGTCGGGCTGGGCTACGGCGACGAAGAGCG
CGGGAGGGCGCAGGAGAAGGAGGCGGAGAGGTACAGAGGCGCGCTTCGGG
CGTTTCATGCGAAGCGAATGCTTGTCGTCGTCGGTGGCGTCAGTCTCATG
GTGGGGTGGGCGTGGGAAGAGGCCATCGATCTAATGCTGGAAGGGCTCGT
CGGGGACTCGGCAGACGCCGGCATGGTCGTGGCGAAGCTGGCGCTGGCTG
CACTGTCCATGTCGGTCGTGCTCGGGAGAGAACTGCGAGCGGGAGCGGAA
CACGGCGGTCACGAAGGGATCGGTGGTGCGGGGCATAGCAATGGATTTGT
TGATGGGGGCGGGGGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11562:177..3692+ >mRNA_S-dermatodea_contig11562.997.1 ID=mRNA_S-dermatodea_contig11562.997.1|Name=mRNA_S-dermatodea_contig11562.997.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3132bp|location=Sequence derived from alignment at S-dermatodea_contig11562:177..3692+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGTTTTGGCTCGTCTTGGAAGTTGCTGCCGGAAACGAAGACAGCCG
CGGATACGTTCGGCTCTCGAGCGTGGCGTGCTACGCTCTCGGGCTGCACG
CAGGGGGGCACATTCTCCTCTTCCACCTCCATCGCCGGGGGCTGAGCCAC
CACGCTCTCGAGTTTCTTCTCGACCTCGTGACGGACGTGGTGGGGTTCGC
TTGGATCAACCTGGCCGAGGAGATGCTGGCACAGCAGGTGTTTTGGCTCG
TCTTGGAAGTTGCTGCCGGAAACGAAGACAGCCGCGGATACGTTCGGCTC
TCGAGCGTGGCGTGCTACGCTCTCGGGCTGCACGCAGGGGGGCACATTCT
CCTCTTCCACCTCCATCGCCGGGGGCTGAGCCACCACGCTCTCGAGTTTC
TTCTCGACCTCGTGACGGACGTGGTGGGGTTCGCTTGGATCAACCTGGCC
GAGGAGATGCTGGCACAGGTGTTCCTCGTAACAGCGAGGACAACGCTGCT
GTACGCGGTGCTGGCGTTTGCCGCAAGCTTGGGGGCGATGGAAATCGGCT
CGTGCCTTAGGGGGTTCCTGGATTGCCCCCTGGATTTCGACGAGACCGCC
AATCAGTTCGACGCGGGCTCGTTCGCTCTCCCGACCAGGTGTTCCTCGTA
ACAGCGAGGACAACGCTGCTGTACGCGGTGCTGGCGTTTGCCGCAAGCTT
GGGGGCGATGGAAATCGGCTCGTGCCTTAGGGGGTTCCTGGATTGCCCCC
TGGATTTCGACGAGACCGCCAATCAGTTCGACGCGGGCTCGTTCGCTCTC
CCGACCAGCTGGCTCGTAACCCAGGCCGTGCATATCGCGCTCTACGGGTT
CTTTTATCGCACCAGCGCGGCCGGCGGACAAGGGGGGAGGGACAACGAAG
GCGGCGAGGTCGACGTGCGCCTAGCCGCGTCCCTTTTCCTTCTCGTCTAC
GCCCTGCTGTGCTCGACGCTGGCCGCACGCGTTCTCGGCGGAACGGTGGC
GGCCGCGGCTGTGGCCGACAACAACAGGGGCGACGAAGGCTTTCACGGCG
CCGGCCATACTGTAGAAGGCGGGGACCGAAGCGAGCTGATGATCCGGGCG
GTCGAAGCTGGAGGTCCTTTCACCGCAGCCCAGGCGTCGGACGCCGTAGC
CTCGCCTCCTGCGCAAGGCGGGGGACCCCCCCGGGGGGGGGGGCTCGGGC
GCACGGACAAGGGCGTCCCGCTAGGGGGGCCTCCCGACCCGTCTCTGTTC
AGCAGTGACGGGGATGGCCTGGCTCGTAACCCAGGCCGTGCATATCGCGC
TCTACGGGTTCTTTTATCGCACCAGCGCGGCCGGCGGACAAGGGGGGAGG
GACAACGAAGGCGGCGAGGTCGACGTGCGCCTAGCCGCGTCCCTTTTCCT
TCTCGTCTACGCCCTGCTGTGCTCGACGCTGGCCGCACGCGTTCTCGGCG
GAACGGTGGCGGCCGCGGCTGTGGCCGACAACAACAGGGGCGACGAAGGC
TTTCACGGCGCCGGCCATACTGTAGAAGGCGGGGACCGAAGCGAGCTGAT
GATCCGGGCGGTCGAAGCTGGAGGTCCTTTCACCGCAGCCCAGGCGTCGG
ACGCCGTAGCCTCGCCTCCTGCGCAAGGCGGGGGACCCCCCCGGGGGGGG
GGGCTCGGGCGCACGGACAAGGGCGTCCCGCTAGGGGGGCCTCCCGACCC
GTCTCTGTTCAGCAGTGACGGGGATGGCGGGAGCGACGGTGAGGGCAGCG
GAGAAGCGGCACCCCTGCAGGCAGCGGCGGCGCTATTCGCGGCGGCGGCG
GTGGGGGCGGCGGAGACCAATCGGGCTCGGCGTGGGTCCCTCCGCCGAGG
CCTGAAAGCCTACATGAGGATCACCGTCGGGATGATGGTGGGCTGGGCGT
ACAACCTGTGGGGCCAGGTGGAATTCCGACAGGAGGAGCTCGAGTTCCGG
TTCGGGCCGGCCCTGGGCGCTACCGTATACGCCGCCCTCAGCACCGCGCT
CGGGGTGTGCATCATGGTGCGCGGAGCGGACAAACTGGATGGCAGGGGAC
CCGATCGCGTGGCGGCGCGCGGAGACGTGTACGACGTCGGGCTGGGCTAC
GGCGACGAAGAGCGCGGGAGGGCGCAGGAGAAGGAGGCGGAGAGGTACAG
AGGCGCGCTTCGGGCGTTTCATGCGAAGCGAATGCTTGTCGTCGTCGGTG
GCGTCAGTCTCATGGTGGGGTGGGCGTGGGAAGAGGCCATCGATCTAATG
CTGGAAGGGCTCGTCGGGGACTCGGCAGACGCCGGCATGGTCGTGGCGAA
GCTGGCGCTGGCTGCACTGTCCATGTCGGTCGTGCTCGGGAGAGAACTGC
GAGCGGGAGCGGAACACGGCGGTCACGAAGGGATCGGTGGTGCGGGGCAT
AGCAATGGATTTGTTGATGGGGGCGGGGGCGGGAGCGACGGTGAGGGCAG
CGGAGAAGCGGCACCCCTGCAGGCAGCGGCGGCGCTATTCGCGGCGGCGG
CGGTGGGGGCGGCGGAGACCAATCGGGCTCGGCGTGGGTCCCTCCGCCGA
GGCCTGAAAGCCTACATGAGGATCACCGTCGGGATGATGGTGGGCTGGGC
GTACAACCTGTGGGGCCAGGTGGAATTCCGACAGGAGGAGCTCGAGTTCC
GGTTCGGGCCGGCCCTGGGCGCTACCGTATACGCCGCCCTCAGCACCGCG
CTCGGGGTGTGCATCATGGTGCGCGGAGCGGACAAACTGGATGGCAGGGG
ACCCGATCGCGTGGCGGCGCGCGGAGACGTGTACGACGTCGGGCTGGGCT
ACGGCGACGAAGAGCGCGGGAGGGCGCAGGAGAAGGAGGCGGAGAGGTAC
AGAGGCGCGCTTCGGGCGTTTCATGCGAAGCGAATGCTTGTCGTCGTCGG
TGGCGTCAGTCTCATGGTGGGGTGGGCGTGGGAAGAGGCCATCGATCTAA
TGCTGGAAGGGCTCGTCGGGGACTCGGCAGACGCCGGCATGGTCGTGGCG
AAGCTGGCGCTGGCTGCACTGTCCATGTCGGTCGTGCTCGGGAGAGAACT
GCGAGCGGGAGCGGAACACGGCGGTCACGAAGGGATCGGTGGTGCGGGGC
ATAGCAATGGATTTGTTGATGGGGGCGGGGGC back to top
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