mRNA_S-dermatodea_contig11510.979.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11510.979.1
Unique NamemRNA_S-dermatodea_contig11510.979.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Match: A0A6H5K9A7_9PHAE (Protein N-terminal glutamine amidohydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A7_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 1.670e-94
Identity = 150/236 (63.56%), Postives = 182/236 (77.12%), Query Frame = 3 
Query:  108 MGPCG-KGWAGAS-SGAAARSSLDMTQSSIRSVSPNPLPAFTRAACSWYTSHYCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHEPVLWDYHVLLLAQNPHGSWIYDLDSTLPFPSQATLYITHAFRKGAAMDDRYRQVFRVVPARECVDHFASDRSHMRQRSGVYSAQPPDCPPLRGPRASSAHNMGEWINMDASTGRGRVMTLDEVDDFVSQAPHR*T 809
            MGPCG K W G   S  AAR+      +     +  P+   TRA C WYTSHYCEEN+LRLC  LLG A++ G+ L V+FVSN ARQVPVW+QRLAD + EPVLWDYHV+LLAQ+PHG+W+YDLDSTL FPS A+LY+T AFRK   +D +YRQ+FRVVPARECVDHF+SDRSHM +  G YSA PP  PPLRGPRA+S++NM EWINMDA+TGRGRV+ L+E++ FV++ PHR T
Sbjct:    1 MGPCGNKDWEGGGPSDGAARAVSSAEVAPTPPSARRPVLECTRADCRWYTSHYCEENSLRLCNHLLGRAESAGVQLSVVFVSNAARQVPVWFQRLADRRDEPVLWDYHVILLAQHPHGNWVYDLDSTLDFPSPASLYMTQAFRKLMNIDQQYRQMFRVVPARECVDHFSSDRSHMMEEGGGYSALPPGFPPLRGPRATSSNNMNEWINMDATTGRGRVLNLEEMETFVARGPHRFT 236
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BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Match: A0A067QP63_ZOONE (Protein N-terminal glutamine amidohydrolase n=4 Tax=Termitoidae TaxID=1912919 RepID=A0A067QP63_ZOONE)

HSP 1 Score: 156 bits (394), Expect = 1.500e-39
Identity = 78/184 (42.39%), Postives = 107/184 (58.15%), Query Frame = 3 
Query:  246 YTSHYCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHEPVLWDYHVLLLAQNPHGSWIYDLDSTLPFPSQATLYITHAFRKGAAMDDRYRQVFRVVPARECVDHFASDRSHMRQRSGVYSAQPPDCPPLRGPRASSAHNMGEWINMDASTGRGRVMTLDEVDDFVSQAP 797
            YT  YCEEN  +LC D+         H +++FVSN  R +P+W Q+    + + ++WDYHVLLL        +YDLDS LPFP+    Y+T  FR    +   Y + FRVVPA   + HFASDR HM++  G +   PPD PP+  P  +SAHN+ E+INMD + G G+VM L ++     Q P
Sbjct:   38 YTPCYCEENVWKLCSDVNTRHQTELQHCHIVFVSNDCRTIPLWRQKAGKEEEKLIIWDYHVLLLYNPDDRCLVYDLDSELPFPTYFHKYVTETFRTDQILKPDYFRYFRVVPASVFLQHFASDRRHMKRADGSWIKPPPDYPPISIP--ASAHNLDEFINMDPTKGLGQVMNLTQLVKTFYQQP 219
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BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Match: UPI00158F43EB (protein N-terminal glutamine amidohydrolase n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158F43EB)

HSP 1 Score: 154 bits (389), Expect = 7.910e-39
Identity = 75/187 (40.11%), Postives = 110/187 (58.82%), Query Frame = 3 
Query:  213 LPAFTRAACSWYTSHYCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHEPVLWDYHVLLLAQNPHGSWIYDLDSTLPFPSQATLYITHAFRKGAAMDDRYRQVFRVVPARECVDHFASDRSHMRQRSGVYSAQPPDCPPLRGPRASSAHNMGEWINMDASTGRGRVMTLDEV 773
            +P FT+AA   YTS YCEEN  +LC D+     +   H YV+F+SN  R VP+W QR      + ++WDYH +L+      + +YDL+S LPFP+    Y T  FR   A+   Y + FR++PA   + HFASDR+HM++  G +   PPD PP+  P      N+  +I+M++ TG G VM+L ++
Sbjct:   15 VPLFTKAADCVYTSCYCEENVWKLCQDISTRHTSELQHCYVVFISNSNRSVPLWRQREGKGDDKVIVWDYHAILIYAPDERAVVYDLESALPFPTYFWKYATETFRTDEALRPEYHRRFRLIPAATYLQHFASDRAHMKREDGTWIKTPPDYPPICTPTCKD--NLDSFISMESGTGFGTVMSLKQL 199
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BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Match: A0A6J0CAH9_NEOLC (Protein N-terminal glutamine amidohydrolase n=3 Tax=Tenthredinoidea TaxID=85772 RepID=A0A6J0CAH9_NEOLC)

HSP 1 Score: 151 bits (381), Expect = 9.930e-38
Identity = 73/187 (39.04%), Postives = 107/187 (57.22%), Query Frame = 3 
Query:  213 LPAFTRAACSWYTSHYCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHEPVLWDYHVLLLAQNPHGSWIYDLDSTLPFPSQATLYITHAFRKGAAMDDRYRQVFRVVPARECVDHFASDRSHMRQRSGVYSAQPPDCPPLRGPRASSAHNMGEWINMDASTGRGRVMTLDEV 773
            +P FT+A+   +TS YCEEN  +LC D+         H YV F+SN  R VP+W Q+    + + VLWDYH +L+      + +YDLDS LPFP+    Y T  FR   A+   Y + FR+VPA   + HFAS+R HM++  G +   PP+ PP+  P      N+  +INM+  TG G +++L ++
Sbjct:   15 VPLFTKASDCVHTSCYCEENVWKLCQDVATRHGPELQHCYVAFISNPGRSVPLWRQKAGKDEDQLVLWDYHAILIYAPDDRAVVYDLDSALPFPTHFWKYATETFRSDEALRSEYHRRFRLVPAATYLQHFASNRQHMKREDGTWIKTPPEYPPISTPTCKD--NLDTFINMEPGTGLGSILSLKQL 199
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BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Match: UPI001F4FAC05 (protein N-terminal glutamine amidohydrolase n=1 Tax=Schistocerca americana TaxID=7009 RepID=UPI001F4FAC05)

HSP 1 Score: 150 bits (380), Expect = 1.170e-37
Identity = 79/182 (43.41%), Postives = 103/182 (56.59%), Query Frame = 3 
Query:  228 RAACSWYTSHYCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHEPVLWDYHVLLLAQNPHGSWIYDLDSTLPFPSQATLYITHAFRKGAAMDDRYRQVFRVVPARECVDHFASDRSHMRQRSGVYSAQPPDCPPLRGPRASSAHNMGEWINMDASTGRGRVMTLDEV 773
            R+ C  YT  YCEEN   LC  +         H YV+FVSN  R VP+W Q+    + + V+WDYHVL L        +YDLDS LPFP+    Y+T  FR    +   Y + FRVVPA   + HFASDR HM++  G +   PPD PP+  P  S +HN+ E+INMD + G G VM L ++
Sbjct:   34 RSDCK-YTPSYCEENVWHLCHAVSNHHPKELQHCYVVFVSNDHRTVPLWRQKAGHEEEKLVIWDYHVLFLYTPDDRCLVYDLDSELPFPTYFHKYVTETFRTDHILKPDYFRYFRVVPAPVFLQHFASDRRHMKRLDGAWLKAPPDYPPITTP--SCSHNLEEFINMDPTKGHGEVMNLTQL 212
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BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Match: UPI000B8ED9DD (protein N-terminal glutamine amidohydrolase isoform X2 n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=UPI000B8ED9DD)

HSP 1 Score: 147 bits (372), Expect = 7.710e-37
Identity = 74/180 (41.11%), Postives = 104/180 (57.78%), Query Frame = 3 
Query:  258 YCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHEPVLWDYHVLLLAQNPHGSWIYDLDSTLPFPSQATLYITHAFRKGAAMDDRYRQVFRVVPARECVDHFASDRSHMRQRSGVYSAQPPDCPPLRGPRASSAHNMGEWINMDASTGRGRVMTLDEVDDFVSQAP 797
            + EEN  +LC D+         H +++FVSN  R +P+W Q+    + + ++WDYHVLLL        +YDLDS LPFP+    Y+T  FR    +   Y + FRVVPA   + HFASDR HM++  G +   PPD PP+  P  +SAHN+ E+INMD + G G+VM L ++     Q P
Sbjct:   23 FSEENVWKLCSDVNTRHQTELQHCHIVFVSNDCRTIPLWRQKAGKEEEKLIIWDYHVLLLYNPDDRCLVYDLDSELPFPTYFHKYVTETFRTDQILKPDYFRYFRVVPASVFLQHFASDRRHMKRADGSWIKPPPDYPPISIP--ASAHNLDEFINMDPTKGLGQVMNLTQLVKTFYQQP 200
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BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Match: A0A6J1SNZ8_FRAOC (Protein N-terminal glutamine amidohydrolase n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SNZ8_FRAOC)

HSP 1 Score: 148 bits (374), Expect = 8.870e-37
Identity = 75/184 (40.76%), Postives = 114/184 (61.96%), Query Frame = 3 
Query:  228 RAACSWYTSHYCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHEPVLWDYHVLLLAQNPHGSW--IYDLDSTLPFPSQATLYITHAFRKGAAMDDRYRQVFRVVPARECVDHFASDRSHMRQRSGVYSAQPPDCPPLRGPRASSAHNMGEWINMDASTGRGRVMTLDEV 773
            R++C  YTS YCEEN  ++C D+     +   H YV+FVSN+AR +P+W QR  +++ + V++DYH +LL   P G    +YDLDS LPFP+    Y+T  FR    +D  Y + FRVVPA + + +FASDR H R+    +   PP  P +    ++S+HNM ++++MD S G G+V+ L ++
Sbjct:   36 RSSCV-YTSGYCEENVWKMCEDISSRLPSELQHCYVVFVSNKARTIPLWRQRAGETEDKLVIYDYHTMLLYM-PSGERCVVYDLDSELPFPTHFHKYVTETFRTDQVLDPDYFRYFRVVPAAQYLQNFASDRRHWRKADNTWLKTPPSYPLIS--TSASSHNMDQYVDMDQSKGPGQVLNLTQI 215
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BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Match: A0A6P8ZN68_THRPL (Protein N-terminal glutamine amidohydrolase n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZN68_THRPL)

HSP 1 Score: 148 bits (373), Expect = 1.210e-36
Identity = 74/183 (40.44%), Postives = 113/183 (61.75%), Query Frame = 3 
Query:  228 RAACSWYTSHYCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHEPVLWDYHVLLLAQNP-HGSWIYDLDSTLPFPSQATLYITHAFRKGAAMDDRYRQVFRVVPARECVDHFASDRSHMRQRSGVYSAQPPDCPPLRGPRASSAHNMGEWINMDASTGRGRVMTLDEV 773
            R+ C  YTS YCEEN  ++C D+     +  +H +V+FVSN+AR +P+W QR  +++ + V++DYH +LL   P     +YDLDS LPFP+    Y+T  FR    +D  Y + FRV+PA + V +FASDR H R+    +   PP  PP+    A+ +HNM ++++MD S G G+V+ L ++
Sbjct:   36 RSGCV-YTSGYCEENVWKMCEDVSTRLPSELLHCHVVFVSNKARTIPLWRQRSGETEDKLVIYDYHAMLLYMPPAERCVVYDLDSELPFPTHFHKYVTETFRTDQVLDPDYFRYFRVIPAAQYVQNFASDRRHWRKADNSWLKTPPLYPPIS--TAACSHNMDQYVDMDQSKGPGQVLNLTQI 215
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BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Match: UPI0004F41D87 (putative DREV methyltransferase n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F41D87)

HSP 1 Score: 147 bits (372), Expect = 2.660e-36
Identity = 82/206 (39.81%), Postives = 114/206 (55.34%), Query Frame = 3 
Query:  207 NPLPAFTRAACSWYTSHYCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHE-PVLWDYHVLLLAQNP-------HGSWIYDLDSTLPFPSQATLYITHAFRKGAAMDDRYRQVFRVVPARECVDHFASDRSHMRQ-RSGVYSAQPPDCPPLRGPRASSAHNMGEWINMDAS-TGRGRVMTLDEVDDFVSQA 794
            +PL   TR     Y SHYCEEN  +L   L       G  ++V+FVSN ++QVP+W QRL+    + PV+WDYHV              H  W+YD D+ LP+P  A  Y+  +FR    + D+Y+Q+FRVVP R  + HF+SDRSHM+   SG  S  PP  PP+RG +A+SA  + ++  MD        V ++  V D V+ A
Sbjct:   33 DPLSCLTRELVP-YASHYCEENVYKLTEKLYADCGLPGDDVFVVFVSNTSKQVPIWMQRLSGGDADNPVVWDYHVFAFVATAITTTTTIHNGWVYDSDTLLPYPCPAKQYVLESFRPQVLLRDKYQQMFRVVPGRMFLAHFSSDRSHMKDVTSGGGSLPPPPWPPIRGAQAASAMELPKYWRMDVGDASETAVDSIGTVMDLVAFA 237
[Close]
BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Match: UPI000E6D8E00 (protein N-terminal glutamine amidohydrolase n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D8E00)

HSP 1 Score: 146 bits (368), Expect = 4.490e-36
Identity = 79/188 (42.02%), Postives = 106/188 (56.38%), Query Frame = 3 
Query:  210 PLPAFTRAACSWYTSHYCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHEPVLWDYHVLLL-AQNPHGSWIYDLDSTLPFPSQATLYITHAFRKGAAMDDRYRQVFRVVPARECVDHFASDRSHMRQRSGVYSAQPPDCPPLRGPRASSAHNMGEWINMDASTGRGRVMTLDE 770
            PL     A CS Y S YCEEN  +LC D            +V+F+SN  R VP+W QR        V+WDYHV+ L + +     +YDLDS LPFP+    Y+T  FR    +   + + FRVVPA++ + HFASDR HM++  G +   PP  P +    +SS+HN+ E+INMD  TG G+V TL E
Sbjct:   24 PLFPKQAAECS-YVSCYCEENVWKLCQDASSRVPEEMDRCFVVFISNTCRTVPLWKQRAGREDDRLVIWDYHVIFLYSWDAKTCLVYDLDSELPFPTFFHKYVTETFRTDQVLKSDFHRFFRVVPAKQFLQHFASDRRHMKRPDGSWIKPPPPYPAIS--TSSSSHNLDEYINMDIGTGPGQVFTLTE 208
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11510.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9A7_9PHAE1.670e-9463.56Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
A0A067QP63_ZOONE1.500e-3942.39Protein N-terminal glutamine amidohydrolase n=4 Ta... [more]
UPI00158F43EB7.910e-3940.11protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
A0A6J0CAH9_NEOLC9.930e-3839.04Protein N-terminal glutamine amidohydrolase n=3 Ta... [more]
UPI001F4FAC051.170e-3743.41protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
UPI000B8ED9DD7.710e-3741.11protein N-terminal glutamine amidohydrolase isofor... [more]
A0A6J1SNZ8_FRAOC8.870e-3740.76Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
A0A6P8ZN68_THRPL1.210e-3640.44Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
UPI0004F41D872.660e-3639.81putative DREV methyltransferase n=1 Tax=Trypanosom... [more]
UPI000E6D8E004.490e-3642.02protein N-terminal glutamine amidohydrolase n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11510contigS-dermatodea_contig11510:1048..6040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score160.6
Seed ortholog evalue8.8e-37
Seed eggNOG ortholog136037.KDR11405
Preferred nametun
KEGG rclassRC00010
KEGG koko:K21286
KEGG ReactionR11560
GOsGO:0003008,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008150,GO:0008306,GO:0008355,GO:0032501,GO:0042048,GO:0042221,GO:0050877,GO:0050890,GO:0050896
EggNOG free text desc.Mediates the side-chain deamidation of N-terminal glutamine residues to glutamate, an important step in N-end rule pathway of protein degradation. Conversion of the resulting N- terminal glutamine to glutamate renders the protein susceptible to arginylation, polyubiquitination and degradation as specified by the N-end rule. Does not act on substrates with internal or C- terminal glutamine and does not act on non-glutamine residues in any position
EggNOG OGs39YVE@33154,3BB47@33208,3CU8D@33213,3SHBE@50557,41YDX@6656,KOG3261@1,KOG3261@2759
EC3.5.1.122
COG Functional cat.F
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size2924
Cds size699
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924206.7639952-UTR-S-dermatodea_contig11510:1047..11541622924206.7639952-UTR-S-dermatodea_contig11510:1047..1154Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11510 1048..1154 +
1694079092.525443-UTR-S-dermatodea_contig11510:1047..11541694079092.525443-UTR-S-dermatodea_contig11510:1047..1154Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11510 1048..1154 +
1622924206.8229778-UTR-S-dermatodea_contig11510:3922..60401622924206.8229778-UTR-S-dermatodea_contig11510:3922..6040Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11510 3923..6040 +
1694079092.588809-UTR-S-dermatodea_contig11510:3922..60401694079092.588809-UTR-S-dermatodea_contig11510:3922..6040Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11510 3923..6040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924206.7762516-CDS-S-dermatodea_contig11510:1154..12651622924206.7762516-CDS-S-dermatodea_contig11510:1154..1265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11510 1155..1265 +
1694079092.537815-CDS-S-dermatodea_contig11510:1154..12651694079092.537815-CDS-S-dermatodea_contig11510:1154..1265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11510 1155..1265 +
1622924206.7840111-CDS-S-dermatodea_contig11510:1631..18391622924206.7840111-CDS-S-dermatodea_contig11510:1631..1839Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11510 1632..1839 +
1694079092.547343-CDS-S-dermatodea_contig11510:1631..18391694079092.547343-CDS-S-dermatodea_contig11510:1631..1839Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11510 1632..1839 +
1622924206.7935877-CDS-S-dermatodea_contig11510:2241..23771622924206.7935877-CDS-S-dermatodea_contig11510:2241..2377Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11510 2242..2377 +
1694079092.5573878-CDS-S-dermatodea_contig11510:2241..23771694079092.5573878-CDS-S-dermatodea_contig11510:2241..2377Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11510 2242..2377 +
1622924206.8076308-CDS-S-dermatodea_contig11510:3290..34071622924206.8076308-CDS-S-dermatodea_contig11510:3290..3407Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11510 3291..3407 +
1694079092.567455-CDS-S-dermatodea_contig11510:3290..34071694079092.567455-CDS-S-dermatodea_contig11510:3290..3407Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11510 3291..3407 +
1622924206.8152115-CDS-S-dermatodea_contig11510:3795..39221622924206.8152115-CDS-S-dermatodea_contig11510:3795..3922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11510 3796..3922 +
1694079092.577387-CDS-S-dermatodea_contig11510:3795..39221694079092.577387-CDS-S-dermatodea_contig11510:3795..3922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11510 3796..3922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11510.979.1prot_S-dermatodea_contig11510.979.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11510 1155..3922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11510.979.1

>prot_S-dermatodea_contig11510.979.1 ID=prot_S-dermatodea_contig11510.979.1|Name=mRNA_S-dermatodea_contig11510.979.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=233bp
MGPCGKGWAGASSGAAARSSLDMTQSSIRSVSPNPLPAFTRAACSWYTSH
YCEENTLRLCGDLLGPADAVGMHLYVLFVSNRARQVPVWYQRLADSQHEP
VLWDYHVLLLAQNPHGSWIYDLDSTLPFPSQATLYITHAFRKGAAMDDRY
RQVFRVVPARECVDHFASDRSHMRQRSGVYSAQPPDCPPLRGPRASSAHN
MGEWINMDASTGRGRVMTLDEVDDFVSQAPHR*
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mRNA from alignment at S-dermatodea_contig11510:1048..6040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11510.979.1 ID=mRNA_S-dermatodea_contig11510.979.1|Name=mRNA_S-dermatodea_contig11510.979.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4993bp|location=Sequence derived from alignment at S-dermatodea_contig11510:1048..6040+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCCAGCTCAGACTCTGTGATACAGCCCCAGGTGTTGCTACAGCAGCGGG
CACACATCGACAGCTACTGACTACTGTGTCTGTTGATCGCCTTGGCCCGT
GGTCGGTATGGGTCCCTGCGGGAAGGGATGGGCTGGAGCGTCTTCTGGGG
CTGCAGCGCGGTCGAGCCTGGATATGACACAGTCATCGATTCGTTCGGTG
TCACCGAATCCTCTGCCGGTGAGCTGTTGCGAGCACGATGCAGTCCGCCC
TCCACGATGCCAAACAGAAGCGAATCTCGAACCGCTGGCCTCTAAGTTGC
CCTCCGAAGGTTGTCCTATCGGCACTGGACGGCTAGCTCTCGAGCCGCCG
ATCCTGACCCTCGCATGCGGCGAGTTACGTGATCACGTGGCCCAGGCTGG
GATGCAGCTCACCGCCTCGTCCGTTATAAGCGGACTCTTCAAATGAGCTC
TCAAAGCTCAGCAGCACTTCATTCACTACCTTTGTCCATATCAAACGCAG
ACACATACTGCGTACATACACACGCCTCTCGCTCAACGCCCATTGCACTT
GCCACGTCCTACGGTCCCCTGAAAACTCTTGCAGGCCTTCACCCGCGCCG
CGTGCAGCTGGTACACCTCTCACTATTGTGAGGAGAACACGCTGCGTCTG
TGCGGAGATCTATTGGGTCCTGCCGACGCAGTAGGAATGCATCTATACGT
TCTCTTCGTCTCCAATCGCGCTCGCCAAGTTCCGGTGTGGTACCAGCGCC
TCGCCGACAGCCAGCATGAGCCCGTGCTCTGGGACTATCACGGTGAGCCT
CTGCCCCTTGCTGAGCCGCGCGTGGTGGGCGTCGGTAGAATCGATAGACT
CGCTGAGTGCGGCGGCGCGCTTGTATGCCACGTATGTCCCCCCCCAGTCA
GCTCTCTCAGCTCTAAGCCGAGATTTCACAGCACCGCAAACTGCCTTGTG
TGACCATTCAGAGAAGGCCTGTTGGGACTATCAATAGCTGACTGACCCCA
AACATAGCTGAGCTCGTGACGCAAGCATTTCTGCTATGATAGCTATATTG
TTCCCACTGCTGATGATGCTGCGTGCTGCTCATGTCCGCACCTGTCAGCC
GGTTTTGCGTTTGGTTTTGTTTGCAGCTCACTCCTGTATAAATAATGTGT
AAATATCCTCCGCCCCTCTCCGTTGCACTTTCGTCACCCAACAGTGCTCC
TTTTGGCGCAGAACCCACACGGAAGCTGGATCTACGACCTCGACTCCACC
CTGCCGTTTCCAAGTCAGGCTACGCTCTACATTACTCACGCGTTTCGCAA
GGGTGCCGCGATGGATGACCGATACAGGCAGTGAGTGCCGTGCAAATCGT
TTTTTTTTTCCACCCCTCGTTTTCGAAATCACCCGCATTTCCTCTGTTCA
GAGAGAGCTTACTCATACAGAGCTCTTTTCTCTCTGAGCACTCTTTGTGT
ACTTGCACCCTGTTTCTACAGGGTTTCTCTTGAATTCCTGGAAGGCGTCG
GAATCACGTGCCAGTAGGATATATGATACGCAAGATGATATCTGCACTAC
AGAATTAAGTATCTCGTGCTGTCCCAAAAGCCTCCAAACGCTGCTGTATC
ATCTCGCACACGCCGCTGGATCATATACAAGCCGTTGTATATATCACATA
CCAGGTATCATACAGGTCGTTGTCCCCGCAGGAGTGAAAGTAGCCGTGTA
TCCGCCGCCCTGACGCGTGAAGTTATGTTCAGGTTATTTGGTAGGGAGTT
GTGTCTGGAAACACAGATACAGTACAGGCCCGCTCAGAAGAAACGCGCTT
GTAAGAAAATCAGGCTGAGATTTTTGAAAACAAAAAGCGTCAAGTGCTGC
ACTAAACCCTATACTTGTATACTAGGGATCGCCCCATATAAGTAACTCAG
GCTGAGCATGATTTCAGGTTCTTGTGAGTGGGCCGGTACTGCTGTATATA
GTTATATAATAGTGCTGTTCGAATTCCGTGGAGATCTGGGTGAAGGCTTG
AAAGTTGCCGTTGCGTGCGCTTTGCAGCAGGTGACCGCCCCATGACATAG
CATATGCGTCACAAAAAAACAAGCCCAGGCGGTGCATTGTGAAATACGGA
ACTTCGAAAGTATCTATAGCCCTCTTCCGCAGGTTGCATACGTGCACATG
CACAAGTGACAGCTCTCCCCAAATTCCCTGTAGCCCATCCAACTTCAAAA
CATTTGTATCTCGTCGCCGTCGCCTCTTGTTTGTTTCGCCCAGGGTATTC
CGGGTGGTGCCCGCGCGCGAGTGTGTGGACCACTTCGCATCGGACCGTTC
GCACATGAGGCAGCGAAGCGGGGTGTATAGCGCGCAGCCCCCAGATTGCC
CTCCGCTACGGTAAGCCCACCGCATGCTCTTCCGCCTATCGTTCCACCGA
TGGAGGTGTGAAACTTGCCTGACCGAAATTGTCTTGGATTTTACGCTCTC
CCCGCGCGGTTTATCTACGAGACACATACATACGGGTGCCTGCATGCCCC
TGCGCCCATGCAGCATTTCCCTTTTGGGCGAGACGCGTTCAGTGATCGGG
GTACGCGACCCGATGTGCAGCGCCTGGCGGTGTCTTTGAGCCGTACTCAT
ATTTTTCCCTTTCGTGGCGAACATCATGTGCAACGCTGTTTGCGAGCTGA
GTCGCCCCTTTCCTCGCGTATCCGAGGGGAGCATGAACAACCAGGGCAAA
ACGTGATCAGCTCAAGCCTTCCTCTCGTGCGTTCAACTTGCCATGCAGGG
GCCCGCGAGCGTCCAGCGCTCACAACATGGGCGAGTGGATCAACATGGAC
GCCTCCACCGGGCGAGGTCGTGTTATGACGCTCGATGAGGTGGATGATTT
CGTAAGCCAAGCCCCGCATCGGTAAACCTACATTTTCTTTTTTGGCGGGC
GGGGGGAGGGGGGGTGCTCAGAGAGAGGTCTGCCCTCGATCGTTTTCTTC
CCTCTTTCGCCCCACATTTTTTCATCATTACTGGTACAGTATGTGACATG
CAGCAACGTGTCGTTTTTGCACACTCGATTCTGTTCGTATCTTCAGGGTA
TCAGTGTCTTTACCCTGGTATGGAATATATGATATTGGGGTATTGACTCT
TGTATGCGGGGGAGAGTATTTTTGGAAGAGTCTTTTGTTTATCTGTGAGG
CATTCGCCCGAGGCTTCGTTCCCTTGTGGCACTCTTCGTTTCTCTCCGTT
CTCTGACTCTAATATATCAAAGCTATAAACCTACTTCGGTGCCAAGGGAC
GGCGCTAAATGCAGCGGGCTAGTTGCATCCCACGTCACTAAAAATTCGTG
TGTGTGTGTGTGTGTGTGATTTTTTTTTATTTTTTCGGTGGGGGTCACTA
GCGAGAGGGAGCGCAGGGGATGTGGGCCCGTTTGCGCTTAGCTTCCCTCT
TTTGCACCTCAATTTATTTTTTGGTCATCAAAATGGCACTGCACGTGGAT
TTGCTCCCTAGTAAATTATGTAGACCTCGAGGAATTGCTGACTTCCAGGT
TCTCGATTCAGTGGTTGCAGGCAAGCACGTATTTTGTAGCCTGCGTTTTG
TCTTAATTTACGTGGGATACTCCAAAAAGAGCATATACTGCTGTTGCACT
GAAGGACTATGATAGTGTGATTGATTTGCGGGAAAACGACTGTCTTCTGG
CGTATCGTGTGAGTGTCATGGCTAGGAGTGGACGGACAACGTGAAGGTCT
CTGTTTGATAGTATTGTGTTCTCGTGCAGCTAGCGACCGGTACCCTTATG
TCGACAAACTATGTGGTGGCGACATTATTGGTACGGGGTTGGCATTGTGT
GTCGGATGGTACCTGGAAGATAAGAGCCGTCTGTGTGTGCGGAAGTGTTT
TCGTCGCATTCATGTGGTGTGTGGGCAGAATGGCAACAATGTGAAAAATG
TCTCACGGTGTTTCTCGCAACCCCCCGCTTTTTGTGAAGCAAGACGAGAC
GATTGGCTTAATCCCATCTCACATTTAAGCAAAAAGAAGAGGGCACGTAT
ATAGGGGATCAGTTTTGTCATTACGGGGGTGAACACACGGTAGTGGTGGT
TCGCCCCCCATGCTAGGCCTGGGCCAGTGGCTGTAAAGTGCGCGGGCACG
GGAACGGTTTTAGCGCACGGTGGGAGGGCGAGGGGCAGTTTTGGCGTGAG
CAGATTTGTAGTGACCGGCCCGACCTGCCCTTCGCTGTTTGTACGCATCA
GAGTGTTGGTGGGTTAGGAGCTTCAGGGAAGTAGAAAGTGCGTTTGATGC
GCGGCGAGGGAGGCGACTGCGCCTTCCCCTCACATCAAATGAGGCCTGCC
CATAATTTTTTATTATATTCGGTTGTGGCACTCCCTAGGTCGATGTGTGC
GCACAAAGATCTACCCTTCTGAGGCTTTGTAGATCCGCGTTCCTTTCTGT
TGTAAGGTCACGTAGGATAGTTCTGACGATGTTCGTTTTTTTTTGCAAGC
ACCAGCTAGCCCGCGCCCTTGTGACGCCGCCTGGTGATTTGCCTTGCATG
GTTCAATATCTTGGATACATAAAAAAAACGTTTTTTTAATCATGTTTGTA
CTCTGTACATGCTGCATGTTGGCAATCGACCCCCATTAATAATGGTATTG
TCGCCGTTTTTATCCAACCATCTCCCCGTCGTCAAGGGGCGGGTGGCACT
GGTGCCTGTGTGTCAAACAACCGATCAAGAGTCGAGGGAACTCGGAATGT
GTAATCACAAGTTCGAGCGCTGCTGGGGTGCTTTTTTTTTTTGCACACAT
ATGATGGACTTGCTTTTTCGTAGTGTCCGTCTGTGTGGTCACAAGAGATC
ATCCCATCTCTTCCCCGGTTCTCACGTTTGATTTTTATCGCGCATTGGGT
TCGGCACTCCCGCAGCTCGCCGATTTCTCGGAGTTTGCTTCCTCACGCTC
TCGCGCTTTCCGCGGCGGAGGTAGAGAAAATAAATAAGTAAATATCGACT
CTGGCGAGATTCGAACCCGGGTTCTCCGCTAACTGGGCTGTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11510:1048..6040+

>mRNA_S-dermatodea_contig11510.979.1 ID=mRNA_S-dermatodea_contig11510.979.1|Name=mRNA_S-dermatodea_contig11510.979.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at S-dermatodea_contig11510:1048..6040+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGTCCCTGCGGGAAGGGATGGGCTGGAGCGTCTTCTGGGGCTGCAGC
GCGGTCGAGCCTGGATATGACACAGTCATCGATTCGTTCGGTGTCACCGA
ATCCTCTGCCGATGGGTCCCTGCGGGAAGGGATGGGCTGGAGCGTCTTCT
GGGGCTGCAGCGCGGTCGAGCCTGGATATGACACAGTCATCGATTCGTTC
GGTGTCACCGAATCCTCTGCCGGCCTTCACCCGCGCCGCGTGCAGCTGGT
ACACCTCTCACTATTGTGAGGAGAACACGCTGCGTCTGTGCGGAGATCTA
TTGGGTCCTGCCGACGCAGTAGGAATGCATCTATACGTTCTCTTCGTCTC
CAATCGCGCTCGCCAAGTTCCGGTGTGGTACCAGCGCCTCGCCGACAGCC
AGCATGAGCCCGTGCTCTGGGACTATCACGGCCTTCACCCGCGCCGCGTG
CAGCTGGTACACCTCTCACTATTGTGAGGAGAACACGCTGCGTCTGTGCG
GAGATCTATTGGGTCCTGCCGACGCAGTAGGAATGCATCTATACGTTCTC
TTCGTCTCCAATCGCGCTCGCCAAGTTCCGGTGTGGTACCAGCGCCTCGC
CGACAGCCAGCATGAGCCCGTGCTCTGGGACTATCACGTGCTCCTTTTGG
CGCAGAACCCACACGGAAGCTGGATCTACGACCTCGACTCCACCCTGCCG
TTTCCAAGTCAGGCTACGCTCTACATTACTCACGCGTTTCGCAAGGGTGC
CGCGATGGATGACCGATACAGGCATGCTCCTTTTGGCGCAGAACCCACAC
GGAAGCTGGATCTACGACCTCGACTCCACCCTGCCGTTTCCAAGTCAGGC
TACGCTCTACATTACTCACGCGTTTCGCAAGGGTGCCGCGATGGATGACC
GATACAGGCAGGTATTCCGGGTGGTGCCCGCGCGCGAGTGTGTGGACCAC
TTCGCATCGGACCGTTCGCACATGAGGCAGCGAAGCGGGGTGTATAGCGC
GCAGCCCCCAGATTGCCCTCCGCTACGGGTATTCCGGGTGGTGCCCGCGC
GCGAGTGTGTGGACCACTTCGCATCGGACCGTTCGCACATGAGGCAGCGA
AGCGGGGTGTATAGCGCGCAGCCCCCAGATTGCCCTCCGCTACGGGGCCC
GCGAGCGTCCAGCGCTCACAACATGGGCGAGTGGATCAACATGGACGCCT
CCACCGGGCGAGGTCGTGTTATGACGCTCGATGAGGTGGATGATTTCGTA
AGCCAAGCCCCGCATCGGTAAGGGCCCGCGAGCGTCCAGCGCTCACAACA
TGGGCGAGTGGATCAACATGGACGCCTCCACCGGGCGAGGTCGTGTTATG
ACGCTCGATGAGGTGGATGATTTCGTAAGCCAAGCCCCGCATCGGTAA
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