mRNA_S-dermatodea_contig11444.934.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11444.934.1
Unique NamemRNA_S-dermatodea_contig11444.934.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Match: D7G3Q5_ECTSI (Type I fatty acid synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q5_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.300e-20
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 FVPLQVAGALNLSDGAVRLGLDLDFLVLFSSASAVLGLSGEPGYAAANGCLDGLAW 168
            F+  +VAGALNLS  A  +GL+LDFLVLFSSASAVLGLSGEPGYAAANGCLDGLAW
Sbjct: 2361 FLEAKVAGALNLSGVASTMGLELDFLVLFSSASAVLGLSGEPGYAAANGCLDGLAW 2416          
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Match: K0FAH1_9NOCA (Mycocerosate synthase n=5 Tax=Nocardia TaxID=1817 RepID=K0FAH1_9NOCA)

HSP 1 Score: 60.8 bits (146), Expect = 2.180e-9
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 FVPLQVAGALNLSDGAVRLGLDLDFLVLFSSASAVLGLSGEPGYAAANGCLDGLA 165
            F P +VAGAL+L       G+DLD+ VLFSSAS+++G+S + GYAAAN  LD LA
Sbjct: 1825 FAP-KVAGALHLDSALTAAGIDLDYFVLFSSASSIVGISPQSGYAAANSVLDALA 1878          
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Match: UPI001C477F0B (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Nocardia iowensis TaxID=204891 RepID=UPI001C477F0B)

HSP 1 Score: 58.5 bits (140), Expect = 1.430e-8
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   13 QVAGALNLSDGAVRLGLDLDFLVLFSSASAVLGLSGEPGYAAANGCLDGLA 165
            +VAGALNL +     G+DLD  VL+SSAS+++G++ + GYAAAN  LD LA
Sbjct: 1863 KVAGALNLDNALTAAGIDLDLFVLYSSASSIVGINPQSGYAAANSVLDTLA 1913          
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Match: A0A7G1KNC8_9NOCA (Putative polyketide synthase n=1 Tax=Nocardia wallacei TaxID=480035 RepID=A0A7G1KNC8_9NOCA)

HSP 1 Score: 58.2 bits (139), Expect = 1.950e-8
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   13 QVAGALNLSDGAVRLGLDLDFLVLFSSASAVLGLSGEPGYAAANGCLDGLAW 168
            +V GAL+L       G++LDF VL+SSAS + GLS + GYA+AN  LD LAW
Sbjct: 1883 KVHGALHLDRATTAAGVELDFFVLYSSASGIAGLSPQLGYASANSALDALAW 1934          
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Match: UPI0005BE8D14 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Nocardia asiatica TaxID=209252 RepID=UPI0005BE8D14)

HSP 1 Score: 57.0 bits (136), Expect = 4.970e-8
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   13 QVAGALNLSDGAVRLGLDLDFLVLFSSASAVLGLSGEPGYAAANGCLDGLA 165
            +VAGA+NL       G+DLD  VLFSSAS+++G+S + GYAAAN  LD +A
Sbjct:  765 KVAGAVNLDTAVTAAGIDLDMFVLFSSASSIVGISPQFGYAAANSVLDMIA 815          
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Match: UPI000840288B (type I polyketide synthase n=1 Tax=Nocardia altamirensis TaxID=472158 RepID=UPI000840288B)

HSP 1 Score: 56.2 bits (134), Expect = 9.330e-8
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   13 QVAGALNLSDGAVRLGLDLDFLVLFSSASAVLGLSGEPGYAAANGCLDGLA 165
            +VAGAL+L +     G+DLD  VL+SSAS+++G++ + GYAAAN  LD LA
Sbjct: 1861 KVAGALHLDNALTAAGIDLDHFVLYSSASSLVGINPQTGYAAANSVLDALA 1911          
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Match: A0A7X6R3V7_9NOCA (Type I polyketide synthase n=18 Tax=Nocardia TaxID=1817 RepID=A0A7X6R3V7_9NOCA)

HSP 1 Score: 55.5 bits (132), Expect = 1.750e-7
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   13 QVAGALNLSDGAVRLGLDLDFLVLFSSASAVLGLSGEPGYAAANGCLDGLA 165
            +VAGA+NL       G++LD  VLFSSAS+++G+S + GYAAAN  LD +A
Sbjct: 1856 KVAGAVNLDTAVTAAGIELDMFVLFSSASSIVGISPQFGYAAANSVLDMIA 1906          
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Match: UPI0009FD2CAD (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Nocardia araoensis TaxID=228600 RepID=UPI0009FD2CAD)

HSP 1 Score: 54.3 bits (129), Expect = 4.460e-7
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   13 QVAGALNLSDGAVRLGLDLDFLVLFSSASAVLGLSGEPGYAAANGCLDGLA 165
            +VAGA+NL        +DLD  VLFSSAS+++G+S + GYAAAN  LD +A
Sbjct: 1398 KVAGAVNLDTAVTAADIDLDMFVLFSSASSIVGISPQFGYAAANSVLDMIA 1448          
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Match: A0A1Q9LKB4_9PSEU (Carrier domain-containing protein n=1 Tax=Actinokineospora bangkokensis TaxID=1193682 RepID=A0A1Q9LKB4_9PSEU)

HSP 1 Score: 54.3 bits (129), Expect = 4.460e-7
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1
Query:   67 LDFLVLFSSASAVLGLSGEPGYAAANGCLDGLA 165
            LDFLVLFSSA  +LGL G+  YAAANGCLDGLA
Sbjct: 1434 LDFLVLFSSAGPLLGLPGQAAYAAANGCLDGLA 1466          
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Match: A0A7Y5CRZ0_9BACT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5CRZ0_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 4.480e-7
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 FVPLQVAGALNLSDGAVRLGLDLDFLVLFSSASAVLGLSGEPGYAAANGCLDGLA 165
            F P +V+GA NL      LG+ LDF VLFSS SA+LG +G+  YAAAN  LDGLA
Sbjct: 1987 FAP-KVSGAWNLH--TATLGMALDFFVLFSSTSALLGAAGQGNYAAANAFLDGLA 2038          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11444.934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Q5_ECTSI2.300e-2082.14Type I fatty acid synthase, putative n=1 Tax=Ectoc... [more]
K0FAH1_9NOCA2.180e-956.36Mycocerosate synthase n=5 Tax=Nocardia TaxID=1817 ... [more]
UPI001C477F0B1.430e-854.90SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A7G1KNC8_9NOCA1.950e-853.85Putative polyketide synthase n=1 Tax=Nocardia wall... [more]
UPI0005BE8D144.970e-854.90SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI000840288B9.330e-852.94type I polyketide synthase n=1 Tax=Nocardia altami... [more]
A0A7X6R3V7_9NOCA1.750e-752.94Type I polyketide synthase n=18 Tax=Nocardia TaxID... [more]
UPI0009FD2CAD4.460e-752.94SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A1Q9LKB4_9PSEU4.460e-778.79Carrier domain-containing protein n=1 Tax=Actinoki... [more]
A0A7Y5CRZ0_9BACT4.480e-758.18SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11444contigS-dermatodea_contig11444:1869..2039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue5.5e-17
Seed eggNOG ortholog2880.D7G3Q5
KEGG koko:K22148
EggNOG free text desc.phosphopantetheine binding
EggNOG OGsCOG0318@1,COG3321@1,KOG1176@2759,KOG1202@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924203.6538942-CDS-S-dermatodea_contig11444:1868..20391622924203.6538942-CDS-S-dermatodea_contig11444:1868..2039Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11444 1869..2039 +
1694079090.128371-CDS-S-dermatodea_contig11444:1868..20391694079090.128371-CDS-S-dermatodea_contig11444:1868..2039Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11444 1869..2039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11444.934.1prot_S-dermatodea_contig11444.934.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11444 1869..2039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11444.934.1

>prot_S-dermatodea_contig11444.934.1 ID=prot_S-dermatodea_contig11444.934.1|Name=mRNA_S-dermatodea_contig11444.934.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=57bp
FVPLQVAGALNLSDGAVRLGLDLDFLVLFSSASAVLGLSGEPGYAAANGC
LDGLAW*
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mRNA from alignment at S-dermatodea_contig11444:1869..2039+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11444.934.1 ID=mRNA_S-dermatodea_contig11444.934.1|Name=mRNA_S-dermatodea_contig11444.934.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at S-dermatodea_contig11444:1869..2039+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTGTTCCCCTTCAGGTCGCGGGAGCGCTCAACCTGTCGGACGGTGCGGT GCGGCTGGGGCTGGACCTTGATTTCCTTGTTCTGTTTTCATCGGCCTCGG CGGTCCTGGGACTTTCCGGAGAGCCCGGATACGCGGCGGCGAACGGCTGC CTGGATGGTCTCGCTTGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11444:1869..2039+

>mRNA_S-dermatodea_contig11444.934.1 ID=mRNA_S-dermatodea_contig11444.934.1|Name=mRNA_S-dermatodea_contig11444.934.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at S-dermatodea_contig11444:1869..2039+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTGTTCCCCTTCAGGTCGCGGGAGCGCTCAACCTGTCGGACGGTGCGGT
GCGGCTGGGGCTGGACCTTGATTTCCTTGTTCTGTTTTCATCGGCCTCGG
CGGTCCTGGGACTTTCCGGAGAGCCCGGATACGCGGCGGCGAACGGCTGC
CTGGATGGTCTCGCTTGGTGATTTGTTCCCCTTCAGGTCGCGGGAGCGCT
CAACCTGTCGGACGGTGCGGTGCGGCTGGGGCTGGACCTTGATTTCCTTG
TTCTGTTTTCATCGGCCTCGGCGGTCCTGGGACTTTCCGGAGAGCCCGGA
TACGCGGCGGCGAACGGCTGCCTGGATGGTCTCGCTTGGTGA
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