mRNA_S-dermatodea_contig11444.933.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11444.933.1
Unique NamemRNA_S-dermatodea_contig11444.933.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11444.933.1 vs. uniprot
Match: D7G3Q5_ECTSI (Type I fatty acid synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q5_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.280e-25
Identity = 61/80 (76.25%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    1 RRGKGFLDGLKADSPRARAWRALSSISTTKVVVLRCDVTVADDVMGAL-SAAGAEASLPPVLGIVHAACPPPKGDSEGEE 237
            RRGKGFL+GLKADSPR RAW ALS+I TTKVVVLRCDVTV  DV  AL +AA AEA LPPV GIVHAACPP  G   GEE
Sbjct: 2271 RRGKGFLEGLKADSPRGRAWSALSAIHTTKVVVLRCDVTVRKDVQTALGTAASAEAGLPPVRGIVHAACPPQAGGG-GEE 2349
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11444.933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Q5_ECTSI2.280e-2576.25Type I fatty acid synthase, putative n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11444contigS-dermatodea_contig11444:473..1366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3.2e-21
Seed eggNOG ortholog2880.D7G3Q5
KEGG koko:K22148
EggNOG free text desc.phosphopantetheine binding
EggNOG OGsCOG0318@1,COG3321@1,KOG1176@2759,KOG1202@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924203.598516-CDS-S-dermatodea_contig11444:472..5621622924203.598516-CDS-S-dermatodea_contig11444:472..562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11444 473..562 +
1694079090.1017332-CDS-S-dermatodea_contig11444:472..5621694079090.1017332-CDS-S-dermatodea_contig11444:472..562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11444 473..562 +
1622924203.6207967-CDS-S-dermatodea_contig11444:1196..13641622924203.6207967-CDS-S-dermatodea_contig11444:1196..1364Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11444 1197..1364 +
1694079090.1132226-CDS-S-dermatodea_contig11444:1196..13641694079090.1132226-CDS-S-dermatodea_contig11444:1196..1364Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11444 1197..1364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11444.933.1prot_S-dermatodea_contig11444.933.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11444 473..1364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11444.933.1

>prot_S-dermatodea_contig11444.933.1 ID=prot_S-dermatodea_contig11444.933.1|Name=mRNA_S-dermatodea_contig11444.933.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
RRGKGFLDGLKADSPRARAWRALSSISTTKVVVLRCDVTVADDVMGALSA
AGAEASLPPVLGIVHAACPPPKGDSEGEEATDAPGD
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mRNA from alignment at S-dermatodea_contig11444:473..1366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11444.933.1 ID=mRNA_S-dermatodea_contig11444.933.1|Name=mRNA_S-dermatodea_contig11444.933.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=894bp|location=Sequence derived from alignment at S-dermatodea_contig11444:473..1366+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCGGGGGAAGGGCTTCCTTGACGGATTGAAGGCGGACTCGCCGCGGGC
GCGCGCTTGGAGGGCTCTCTCCAGCATTTCTACCACAAAGGTGCGGCTAA
ACTTGACAGCTAAAACACGCGTTTTGCCTTGGGTCATACTTTGTGATAAA
TATGCAGGACTTTTTTTTGTTTTTCCCCGTCGTGTTTGTTTCTTATTGTC
GTGTCCGGGTTCCCTTACTTGATCACGAGTGTACTGTGGCCACGTTGCGG
CGAGACTACAGACGCATTCATCACGCGAAACATCCTGTACGAGCATCTTC
GAGAGTCGACCAAACGACGTGGTTGTGGGAAACATTCATCGCGCTCTAGT
ATGATGTACGGCAAGTTGGGTAAGACTATACTGGTATACGACGATGCCGA
TTGTGAAACAGTTGAATAAAATTACGAGTGAGCAGGTGATCGTGCTTGTG
AAACCTGAAAAGATGGAACATCATACAATCCCTGTGTACGGATGAATTTA
TGTATCTGGCGTCACTGTTCGTACGCATAGCTGGGACACCTTTTTCGGCC
CCACGCCCCTGCCCCATGCCGAAGTTAAGTGGACTCGGAAGGGCCCGTTT
CGGACGTAAAGGGAAAACCTGCACACACACACACACACACACACACACAC
ACACACACACACACACGTGGGCTCACACCCTTATCGCCTATTGCCGACCG
GCAAACTTAAAAAAATATATCCAGGTGGTCGTTCTCCGGTGTGACGTCAC
GGTTGCCGATGACGTCATGGGCGCTCTTTCCGCGGCGGGGGCGGAGGCGA
GCTTGCCCCCCGTCCTCGGAATCGTTCACGCCGCCTGTCCTCCGCCAAAG
GGCGACAGCGAAGGGGAAGAAGCTACCGATGCGCCGGGCGACGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11444:473..1366+

>mRNA_S-dermatodea_contig11444.933.1 ID=mRNA_S-dermatodea_contig11444.933.1|Name=mRNA_S-dermatodea_contig11444.933.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig11444:473..1366+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCGGGGGAAGGGCTTCCTTGACGGATTGAAGGCGGACTCGCCGCGGGC
GCGCGCTTGGAGGGCTCTCTCCAGCATTTCTACCACAAAGAGGCGGGGGA
AGGGCTTCCTTGACGGATTGAAGGCGGACTCGCCGCGGGCGCGCGCTTGG
AGGGCTCTCTCCAGCATTTCTACCACAAAGGTGGTCGTTCTCCGGTGTGA
CGTCACGGTTGCCGATGACGTCATGGGCGCTCTTTCCGCGGCGGGGGCGG
AGGCGAGCTTGCCCCCCGTCCTCGGAATCGTTCACGCCGCCTGTCCTCCG
CCAAAGGGCGACAGCGAAGGGGAAGAAGCTACCGATGCGCCGGGCGACGT
GGTCGTTCTCCGGTGTGACGTCACGGTTGCCGATGACGTCATGGGCGCTC
TTTCCGCGGCGGGGGCGGAGGCGAGCTTGCCCCCCGTCCTCGGAATCGTT
CACGCCGCCTGTCCTCCGCCAAAGGGCGACAGCGAAGGGGAAGAAGCTAC
CGATGCGCCGGGCGAC
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