mRNA_S-dermatodea_contig11422.920.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A6H5JU59_9PHAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU59_9PHAE) HSP 1 Score: 233 bits (593), Expect = 5.240e-74 Identity = 124/159 (77.99%), Postives = 135/159 (84.91%), Query Frame = 1
Query: 7 PGAFPLEPPPPPGPGETYRMFGMPYSGEPVELELLPPEKMVIPTSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRVS-NGTATVAAG 480
P FPL+PP PPGPGETYRMFGMPYS EPVE ELLPPEK+V+P SGQ DFRA +K LLNSIMANYGQFMEMLVSSP+RAHEKLSDVETLFVNFHSLLNRYRAHQARH++LERLR QAEEN AV S LEAAM QC SAQE A +CL + +G + VA G
Sbjct: 54 PNEFPLQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAGLKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAEENDAVMSTLEAAMHQCTSAQESAFSCLGLQEHGASCVAEG 212
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: D8LAU4_ECTSI (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU4_ECTSI) HSP 1 Score: 209 bits (533), Expect = 3.740e-66 Identity = 112/140 (80.00%), Postives = 122/140 (87.14%), Query Frame = 1
Query: 64 MFGMPYSGEPVELELLPPEKMVIPTSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRVS-NGTATVAAG 480
MFGMPYS EPVE ELLPPEK+V+P SGQ DFRAE+K LLNSIMANYGQFMEMLVSSP+RAHEKLSDVETLFVNFHSLLNRYRAHQARH++LERLR QA+EN AV SALEAAM QC SAQEGA +CL + NG + VA G
Sbjct: 1 MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAKENDAVMSALEAAMHQCTSAQEGAFSCLGLQENGASGVAEG 140
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A6U1QAX8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QAX8_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 6.030e-23 Identity = 54/123 (43.90%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 37 PPGPGETYRMFGMPYSGEPVELELLPPEKMVIPTSGQ-HTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAM 402
PP P +Y FG+PYS E L+P EK + P +FR+EM+ LL SIMANY Q +++L+ PS+ K+ ++E LFVNFHS+LN++R HQAR ++L RL+ Q ++ + LE+ M
Sbjct: 31 PPVPEGSYASFGIPYSAEAFIPTLVPDEKKLGPKQDDLDRNFRSEMQKLLQSIMANYVQLLDILIECPSQQSRKVEELEQLFVNFHSILNQFRQHQAREMVLVRLKRQKKDEQKALAMLESQM 153
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: F0WF41_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WF41_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.920e-19 Identity = 56/151 (37.09%), Postives = 87/151 (57.62%), Query Frame = 1
Query: 31 PPPPGP-GETYRMFGMPYSGEPVELELLPPEKMVIPTSG--------QHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRVSN 456
P PP P Y MFG PYS + V +LLP + + S Q D++A++K L S++AN Q +++L+ +P +EK+ D+E LFVN H+L+N++R HQAR +I++ LRGQ EE A + + +++ E A + L V N
Sbjct: 34 PAPPAPMAPNYHMFGTPYSTKDVVPDLLPDDSKKLYLSDTSAQDPAPQAIDYKAQLKKLNRSLLANCIQLLDVLIRNPKVFNEKVDDLELLFVNMHNLINKFRPHQAREMIIQLLRGQIEEKQAAINDIRRVLIESREQVERAHSALDVDN 184
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: H3GJZ4_PHYRM (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJZ4_PHYRM) HSP 1 Score: 92.8 bits (229), Expect = 4.060e-19 Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = 1
Query: 31 PPPPGPGE-TYRMFGMPYSGEPVELELLPPEKMVIPTSGQH-----TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
P PP P E TY MFG PYS + V +LLP +K+ P + D++AEMK + S++AN+ + +++L+ P+ +EKL DVE LF+N H+L+N +R HQAR +++ L+ Q +E
Sbjct: 174 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPGKKLYAPAGEEGDEDAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINSFRPHQARETVIQMLKTQVQE 291
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A329SFW2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFW2_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 8.200e-19 Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 1
Query: 31 PPPPGPGE-TYRMFGMPYSGEPVELELLP-PEKMVIPTSGQH-----TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
P PP P E TY MFG PYS + V +LLP P K + G+ D++AEMK + S++AN+ + +++L+ P+ +EKL DVE LF+N H+L+N +R HQAR +++ L+ Q +E
Sbjct: 34 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPGKKLYAPQGEDGGGAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 152
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A2P4YE96_9STRA (Mediator of RNA polymerase II transcription subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YE96_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 9.120e-19 Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 31 PPPPGPGE-TYRMFGMPYSGEPVELELLP-PEKMVIPTSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
P PP P E TY MFG PYS + V +LLP P++ + D++AEMK + S++AN+ + +++L+ P+ +EKL DVE LF+N H+L+N +R HQAR +++ L+ Q +E
Sbjct: 585 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDRKLYAQGDDPVDYKAEMKKINRSLLANFVELVDILIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 698
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: M4BN29_HYAAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN29_HYAAE) HSP 1 Score: 87.4 bits (215), Expect = 7.990e-18 Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 1
Query: 55 TYRMFGMPYSGEPVELELLPPEKMVIPTSGQHT------DFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
TY MFG PYS + V +LL P K V T + + D++AEMK + S++AN+ + +++L+ P +EKL +VE LF+N H+L+N +R HQAR +++ L Q +E
Sbjct: 46 TYHMFGSPYSTQDVVPDLLQPGKKVYATESEDSGAAAIVDYKAEMKKINRSLLANFVELVDILIKKPVLFNEKLDEVELLFLNMHNLINAFRPHQARETVIQMLEMQVQE 155
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A3R7NJF2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NJF2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.190e-17 Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 31 PPPPGPGE-TYRMFGMPYSGEPVELELLPP--EKMVIPTSGQH-----TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
P PP P E TY MFG PYS + V +LLP +K+ P D++A+MK + S++AN+ + +++L+ P+ +EKL DVE LF+N H+L+N +R HQAR +++ L+ Q +E
Sbjct: 35 PSPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDKKLYAPAEDAEGDASVVDYKAQMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 154
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A8K1CA38_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA38_PYTOL) HSP 1 Score: 86.3 bits (212), Expect = 2.260e-17 Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 28 PPPPPGPGETYRMFGMPYSGEPVELELLP-PEKMV-------IP-TSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
PPPP TY MFG PYS + V +LLP P K + +P S + D++A+MK + +S++AN+ + +++L+ PS +EKL+D+E LF+N H+L+N +R HQAR I+ L+ Q E
Sbjct: 43 PPPPETMEPTYHMFGTPYSTKDVVPDLLPQPGKKLYLDGKDSVPGESSEVIDYKAQMKKINHSLLANFTELVDVLIKKPSLFNEKLADLELLFLNMHNLINAFRPHQARETIIHMLKTQINE 164 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11422.920.1 >prot_S-dermatodea_contig11422.920.1 ID=prot_S-dermatodea_contig11422.920.1|Name=mRNA_S-dermatodea_contig11422.920.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp GGPGAFPLEPPPPPGPGETYRMFGMPYSGEPVELELLPPEKMVIPTSGQHback to top mRNA from alignment at S-dermatodea_contig11422:545..2206+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11422.920.1 ID=mRNA_S-dermatodea_contig11422.920.1|Name=mRNA_S-dermatodea_contig11422.920.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1662bp|location=Sequence derived from alignment at S-dermatodea_contig11422:545..2206+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11422:545..2206+ >mRNA_S-dermatodea_contig11422.920.1 ID=mRNA_S-dermatodea_contig11422.920.1|Name=mRNA_S-dermatodea_contig11422.920.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at S-dermatodea_contig11422:545..2206+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |