mRNA_S-dermatodea_contig11422.920.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11422.920.1
Unique NamemRNA_S-dermatodea_contig11422.920.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A6H5JU59_9PHAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU59_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 5.240e-74
Identity = 124/159 (77.99%), Postives = 135/159 (84.91%), Query Frame = 1
Query:    7 PGAFPLEPPPPPGPGETYRMFGMPYSGEPVELELLPPEKMVIPTSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRVS-NGTATVAAG 480
            P  FPL+PP PPGPGETYRMFGMPYS EPVE ELLPPEK+V+P SGQ  DFRA +K LLNSIMANYGQFMEMLVSSP+RAHEKLSDVETLFVNFHSLLNRYRAHQARH++LERLR QAEEN AV S LEAAM QC SAQE A +CL +  +G + VA G
Sbjct:   54 PNEFPLQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAGLKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAEENDAVMSTLEAAMHQCTSAQESAFSCLGLQEHGASCVAEG 212          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: D8LAU4_ECTSI (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU4_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 3.740e-66
Identity = 112/140 (80.00%), Postives = 122/140 (87.14%), Query Frame = 1
Query:   64 MFGMPYSGEPVELELLPPEKMVIPTSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRVS-NGTATVAAG 480
            MFGMPYS EPVE ELLPPEK+V+P SGQ  DFRAE+K LLNSIMANYGQFMEMLVSSP+RAHEKLSDVETLFVNFHSLLNRYRAHQARH++LERLR QA+EN AV SALEAAM QC SAQEGA +CL +  NG + VA G
Sbjct:    1 MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAKENDAVMSALEAAMHQCTSAQEGAFSCLGLQENGASGVAEG 140          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A6U1QAX8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QAX8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.030e-23
Identity = 54/123 (43.90%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   37 PPGPGETYRMFGMPYSGEPVELELLPPEKMVIPTSGQ-HTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAM 402
            PP P  +Y  FG+PYS E     L+P EK + P       +FR+EM+ LL SIMANY Q +++L+  PS+   K+ ++E LFVNFHS+LN++R HQAR ++L RL+ Q ++     + LE+ M
Sbjct:   31 PPVPEGSYASFGIPYSAEAFIPTLVPDEKKLGPKQDDLDRNFRSEMQKLLQSIMANYVQLLDILIECPSQQSRKVEELEQLFVNFHSILNQFRQHQAREMVLVRLKRQKKDEQKALAMLESQM 153          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: F0WF41_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WF41_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.920e-19
Identity = 56/151 (37.09%), Postives = 87/151 (57.62%), Query Frame = 1
Query:   31 PPPPGP-GETYRMFGMPYSGEPVELELLPPEKMVIPTSG--------QHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRVSN 456
            P PP P    Y MFG PYS + V  +LLP +   +  S         Q  D++A++K L  S++AN  Q +++L+ +P   +EK+ D+E LFVN H+L+N++R HQAR +I++ LRGQ EE  A  + +   +++     E A + L V N
Sbjct:   34 PAPPAPMAPNYHMFGTPYSTKDVVPDLLPDDSKKLYLSDTSAQDPAPQAIDYKAQLKKLNRSLLANCIQLLDVLIRNPKVFNEKVDDLELLFVNMHNLINKFRPHQAREMIIQLLRGQIEEKQAAINDIRRVLIESREQVERAHSALDVDN 184          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: H3GJZ4_PHYRM (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJZ4_PHYRM)

HSP 1 Score: 92.8 bits (229), Expect = 4.060e-19
Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   31 PPPPGPGE-TYRMFGMPYSGEPVELELLPPEKMVIPTSGQH-----TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
            P PP P E TY MFG PYS + V  +LLP +K+  P   +       D++AEMK +  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q +E
Sbjct:  174 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPGKKLYAPAGEEGDEDAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINSFRPHQARETVIQMLKTQVQE 291          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A329SFW2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFW2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.200e-19
Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   31 PPPPGPGE-TYRMFGMPYSGEPVELELLP-PEKMVIPTSGQH-----TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
            P PP P E TY MFG PYS + V  +LLP P K +    G+       D++AEMK +  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q +E
Sbjct:   34 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPGKKLYAPQGEDGGGAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 152          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A2P4YE96_9STRA (Mediator of RNA polymerase II transcription subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YE96_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.120e-19
Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   31 PPPPGPGE-TYRMFGMPYSGEPVELELLP-PEKMVIPTSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
            P PP P E TY MFG PYS + V  +LLP P++ +        D++AEMK +  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q +E
Sbjct:  585 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDRKLYAQGDDPVDYKAEMKKINRSLLANFVELVDILIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 698          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: M4BN29_HYAAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN29_HYAAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.990e-18
Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   55 TYRMFGMPYSGEPVELELLPPEKMVIPTSGQHT------DFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
            TY MFG PYS + V  +LL P K V  T  + +      D++AEMK +  S++AN+ + +++L+  P   +EKL +VE LF+N H+L+N +R HQAR  +++ L  Q +E
Sbjct:   46 TYHMFGSPYSTQDVVPDLLQPGKKVYATESEDSGAAAIVDYKAEMKKINRSLLANFVELVDILIKKPVLFNEKLDEVELLFLNMHNLINAFRPHQARETVIQMLEMQVQE 155          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A3R7NJF2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NJF2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.190e-17
Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 1
Query:   31 PPPPGPGE-TYRMFGMPYSGEPVELELLPP--EKMVIPTSGQH-----TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
            P PP P E TY MFG PYS + V  +LLP   +K+  P           D++A+MK +  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q +E
Sbjct:   35 PSPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDKKLYAPAEDAEGDASVVDYKAQMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 154          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A8K1CA38_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA38_PYTOL)

HSP 1 Score: 86.3 bits (212), Expect = 2.260e-17
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   28 PPPPPGPGETYRMFGMPYSGEPVELELLP-PEKMV-------IP-TSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 366
            PPPP     TY MFG PYS + V  +LLP P K +       +P  S +  D++A+MK + +S++AN+ + +++L+  PS  +EKL+D+E LF+N H+L+N +R HQAR  I+  L+ Q  E
Sbjct:   43 PPPPETMEPTYHMFGTPYSTKDVVPDLLPQPGKKLYLDGKDSVPGESSEVIDYKAQMKKINHSLLANFTELVDVLIKKPSLFNEKLADLELLFLNMHNLINAFRPHQARETIIHMLKTQINE 164          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU59_9PHAE5.240e-7477.99Mediator of RNA polymerase II transcription subuni... [more]
D8LAU4_ECTSI3.740e-6680.00Mediator of RNA polymerase II transcription subuni... [more]
A0A6U1QAX8_9STRA6.030e-2343.90Mediator of RNA polymerase II transcription subuni... [more]
F0WF41_9STRA1.920e-1937.09Mediator of RNA polymerase II transcription subuni... [more]
H3GJZ4_PHYRM4.060e-1941.53Mediator of RNA polymerase II transcription subuni... [more]
A0A329SFW2_9STRA8.200e-1942.02Mediator of RNA polymerase II transcription subuni... [more]
A0A2P4YE96_9STRA9.120e-1942.11Mediator of RNA polymerase II transcription subuni... [more]
M4BN29_HYAAE7.990e-1840.00Mediator of RNA polymerase II transcription subuni... [more]
A0A3R7NJF2_9STRA1.190e-1740.00Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CA38_PYTOL2.260e-1740.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11422contigS-dermatodea_contig11422:545..2206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue7.1e-52
Seed eggNOG ortholog2880.D8LAU4
KEGG koko:K15148
GOsGO:0000122,GO:0000428,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006355,GO:0006357,GO:0006629,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0016021,GO:0016298,GO:0016591,GO:0016592,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0030880,GO:0031224,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070847,GO:0071704,GO:0080090,GO:0090575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.regulation of transcription by RNA polymerase II
EggNOG OGsKOG0570@1,KOG0570@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMediator complex, subunit Med7
Ec32 orthologEc-27_006360.1
Exons4
Model size518
Cds size516
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11422.920.1prot_S-dermatodea_contig11422.920.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11422 545..2206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924202.6899529-CDS-S-dermatodea_contig11422:544..6341622924202.6899529-CDS-S-dermatodea_contig11422:544..634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11422 545..634 +
1694079089.4175458-CDS-S-dermatodea_contig11422:544..6341694079089.4175458-CDS-S-dermatodea_contig11422:544..634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11422 545..634 +
1622924202.7027938-CDS-S-dermatodea_contig11422:1138..12781622924202.7027938-CDS-S-dermatodea_contig11422:1138..1278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11422 1139..1278 +
1694079089.4314163-CDS-S-dermatodea_contig11422:1138..12781694079089.4314163-CDS-S-dermatodea_contig11422:1138..1278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11422 1139..1278 +
1622924202.7152574-CDS-S-dermatodea_contig11422:1591..16821622924202.7152574-CDS-S-dermatodea_contig11422:1591..1682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11422 1592..1682 +
1694079089.4409604-CDS-S-dermatodea_contig11422:1591..16821694079089.4409604-CDS-S-dermatodea_contig11422:1591..1682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11422 1592..1682 +
1622924202.7234457-CDS-S-dermatodea_contig11422:2011..22061622924202.7234457-CDS-S-dermatodea_contig11422:2011..2206Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11422 2012..2206 +
1694079089.4507902-CDS-S-dermatodea_contig11422:2011..22061694079089.4507902-CDS-S-dermatodea_contig11422:2011..2206Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11422 2012..2206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11422.920.1

>prot_S-dermatodea_contig11422.920.1 ID=prot_S-dermatodea_contig11422.920.1|Name=mRNA_S-dermatodea_contig11422.920.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp
GGPGAFPLEPPPPPGPGETYRMFGMPYSGEPVELELLPPEKMVIPTSGQH
TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLL
NRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRV
SNGTATVAAGVPMDVVEDYVAG
back to top

mRNA from alignment at S-dermatodea_contig11422:545..2206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11422.920.1 ID=mRNA_S-dermatodea_contig11422.920.1|Name=mRNA_S-dermatodea_contig11422.920.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1662bp|location=Sequence derived from alignment at S-dermatodea_contig11422:545..2206+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGGGCCCGGCGCCTTCCCGCTCGAGCCACCACCGCCGCCGGGCCCGGG GGAGACGTACAGGATGTTCGGGATGCCCTACAGCGGCGAGGTGTGAGCAC ACGTTCGTGGTACAACAATATATGCGGCGTCCGCCGAACGCCGCCCGTTT ATGCATTTGCGTACTACTGTACAGCAGTATGTAAAAAGCTGCTGCTTCGG GTATCACATCATATCATACCATACCACACGACAATGAGAATGGCGGGGAG TGCTACGTACCAGTATCCGGTTGATCGTACGATGCGACTAGCACCTTTGT TTTTATTTTCGTTGTTGTGTGTTGTACCTGCTGCGTGTCTGCAGCCTCTC AGTGTAAGCTATTTGTAGGCGTTTCGGACGGAATCGATCGCTCATGCGAG TGCGTGTCGCCGCATGCGTGCGCGTGTGCGAAACGCGTTCAGGGTTTAGC GGGAAAATTCGCCATAGCTGTGTCGGTACACGGGCGGGCAGGGTGCTTGA CACGGGCTTTGTGTTTTGCATGCGCCGCGCCTGCAACACTACTGATTGGT CGCTGTTGCGTGTCGGGTGTCCCCTCGCCTCCGTGATTGGCCAGCCGGTT GAGCTGGAGTTGCTGCCGCCAGAGAAGATGGTGATCCCGACTTCCGGCCA ACATACCGACTTTCGCGCGGAAATGAAAACTCTGCTGAACAGCATCATGG CCAATTACGGCCAGTTCATGGAGATGCTCGTCAGGTGAGCGCGCCCGTAC GCGTGGTGTGCGCCCTCCCTTGGAAGGCAAAGAGCCTTTGTCCAATGCGA GGCGTCCTCCGAAACAAGCCCATACGCGAAAGGCCAAAATCGCAAAAAAT AGTAGTAAGTCGCGGCGAGCGGCGAGCCTTTTTTTCTTCGCCGGCGATCA TTCTGCGACCCGTGGATTATACGCTGCTGGGTACCCGCCAGCTGGTCCTC TTTCGCTTTCCCCCGTACCGTGTTCTTGGCTCTCAATGCGCAGTTCCAAC CCCCTCCTACTCCGGTTGCTGTATCGCTCTCTGACTGCCCCCGACAGCTC GCCATCCCGCGCCCACGAGAAGCTGTCGGACGTGGAAACGCTGTTCGTCA ACTTCCACAGCCTTCTCAACCGCTACCGCGCGCACCAGGTGACGAGAAAT TGCCGCTCCCTGCTGTTGCTGCCGCCGCGTTCAGCGGCCTCCTGCCTGTT TGTCGCGTAACTTTGTCGCTCTTTTGTTTTGTTTTTTCAATGTGAAGAAA CAGAGCACAGGAAGAGTGCATATCTCGCTCGAGAAATCGCGCGTGTGTGT CCTTCCCGGGGTGGTAGTTGCACGCCTCTTCCTCGTCGAATCAGCTAGGA ACGACCGGCCAACACTGCGAATGGGGATTGGACCCGTTGGTTTGACGCTA CTCACGACACCGTAGACACATTCGAGAGACAACGCCCCCCCCCCAACCCC ACCCCCGTCTACCACAGGCGCGCCACCTCATCCTTGAGCGACTGCGTGGC CAGGCGGAGGAAAACGCCGCCGTAGCATCAGCCCTGGAAGCGGCCATGCT CCAGTGCGTCTCCGCTCAGGAGGGTGCGACGGCGTGCTTACGGGTTTCGA ATGGCACAGCTACCGTCGCAGCGGGAGTTCCAATGGATGTGGTGGAGGAT TACGTGGCGGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11422:545..2206+

>mRNA_S-dermatodea_contig11422.920.1 ID=mRNA_S-dermatodea_contig11422.920.1|Name=mRNA_S-dermatodea_contig11422.920.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at S-dermatodea_contig11422:545..2206+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGGGCCCGGCGCCTTCCCGCTCGAGCCACCACCGCCGCCGGGCCCGGG
GGAGACGTACAGGATGTTCGGGATGCCCTACAGCGGCGAGGGAGGGCCCG
GCGCCTTCCCGCTCGAGCCACCACCGCCGCCGGGCCCGGGGGAGACGTAC
AGGATGTTCGGGATGCCCTACAGCGGCGAGCCGGTTGAGCTGGAGTTGCT
GCCGCCAGAGAAGATGGTGATCCCGACTTCCGGCCAACATACCGACTTTC
GCGCGGAAATGAAAACTCTGCTGAACAGCATCATGGCCAATTACGGCCAG
TTCATGGAGATGCTCGTCAGCCGGTTGAGCTGGAGTTGCTGCCGCCAGAG
AAGATGGTGATCCCGACTTCCGGCCAACATACCGACTTTCGCGCGGAAAT
GAAAACTCTGCTGAACAGCATCATGGCCAATTACGGCCAGTTCATGGAGA
TGCTCGTCAGCTCGCCATCCCGCGCCCACGAGAAGCTGTCGGACGTGGAA
ACGCTGTTCGTCAACTTCCACAGCCTTCTCAACCGCTACCGCGCGCACCA
GCTCGCCATCCCGCGCCCACGAGAAGCTGTCGGACGTGGAAACGCTGTTC
GTCAACTTCCACAGCCTTCTCAACCGCTACCGCGCGCACCAGGCGCGCCA
CCTCATCCTTGAGCGACTGCGTGGCCAGGCGGAGGAAAACGCCGCCGTAG
CATCAGCCCTGGAAGCGGCCATGCTCCAGTGCGTCTCCGCTCAGGAGGGT
GCGACGGCGTGCTTACGGGTTTCGAATGGCACAGCTACCGTCGCAGCGGG
AGTTCCAATGGATGTGGTGGAGGATTACGTGGCGGGGGCGCGCCACCTCA
TCCTTGAGCGACTGCGTGGCCAGGCGGAGGAAAACGCCGCCGTAGCATCA
GCCCTGGAAGCGGCCATGCTCCAGTGCGTCTCCGCTCAGGAGGGTGCGAC
GGCGTGCTTACGGGTTTCGAATGGCACAGCTACCGTCGCAGCGGGAGTTC
CAATGGATGTGGTGGAGGATTACGTGGCGGGG
back to top