prot_S-dermatodea_contig11422.920.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11422.920.1
Unique Nameprot_S-dermatodea_contig11422.920.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length172
Homology
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A6H5JU59_9PHAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU59_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 5.240e-74
Identity = 124/159 (77.99%), Postives = 135/159 (84.91%), Query Frame = 0
Query:    3 PGAFPLEPPPPPGPGETYRMFGMPYSGEPVELELLPPEKMVIPTSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRVS-NGTATVAAG 160
            P  FPL+PP PPGPGETYRMFGMPYS EPVE ELLPPEK+V+P SGQ  DFRA +K LLNSIMANYGQFMEMLVSSP+RAHEKLSDVETLFVNFHSLLNRYRAHQARH++LERLR QAEEN AV S LEAAM QC SAQE A +CL +  +G + VA G
Sbjct:   54 PNEFPLQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAGLKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAEENDAVMSTLEAAMHQCTSAQESAFSCLGLQEHGASCVAEG 212          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: D8LAU4_ECTSI (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU4_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 3.740e-66
Identity = 112/140 (80.00%), Postives = 122/140 (87.14%), Query Frame = 0
Query:   22 MFGMPYSGEPVELELLPPEKMVIPTSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRVS-NGTATVAAG 160
            MFGMPYS EPVE ELLPPEK+V+P SGQ  DFRAE+K LLNSIMANYGQFMEMLVSSP+RAHEKLSDVETLFVNFHSLLNRYRAHQARH++LERLR QA+EN AV SALEAAM QC SAQEGA +CL +  NG + VA G
Sbjct:    1 MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAKENDAVMSALEAAMHQCTSAQEGAFSCLGLQENGASGVAEG 140          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A6U1QAX8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QAX8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.030e-23
Identity = 54/123 (43.90%), Postives = 79/123 (64.23%), Query Frame = 0
Query:   13 PPGPGETYRMFGMPYSGEPVELELLPPEKMVIPTSGQ-HTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAM 134
            PP P  +Y  FG+PYS E     L+P EK + P       +FR+EM+ LL SIMANY Q +++L+  PS+   K+ ++E LFVNFHS+LN++R HQAR ++L RL+ Q ++     + LE+ M
Sbjct:   31 PPVPEGSYASFGIPYSAEAFIPTLVPDEKKLGPKQDDLDRNFRSEMQKLLQSIMANYVQLLDILIECPSQQSRKVEELEQLFVNFHSILNQFRQHQAREMVLVRLKRQKKDEQKALAMLESQM 153          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: F0WF41_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WF41_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.920e-19
Identity = 56/151 (37.09%), Postives = 87/151 (57.62%), Query Frame = 0
Query:   11 PPPPGP-GETYRMFGMPYSGEPVELELLPPEKMVIPTSG--------QHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRVSN 152
            P PP P    Y MFG PYS + V  +LLP +   +  S         Q  D++A++K L  S++AN  Q +++L+ +P   +EK+ D+E LFVN H+L+N++R HQAR +I++ LRGQ EE  A  + +   +++     E A + L V N
Sbjct:   34 PAPPAPMAPNYHMFGTPYSTKDVVPDLLPDDSKKLYLSDTSAQDPAPQAIDYKAQLKKLNRSLLANCIQLLDVLIRNPKVFNEKVDDLELLFVNMHNLINKFRPHQAREMIIQLLRGQIEEKQAAINDIRRVLIESREQVERAHSALDVDN 184          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: H3GJZ4_PHYRM (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJZ4_PHYRM)

HSP 1 Score: 92.8 bits (229), Expect = 4.060e-19
Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = 0
Query:   11 PPPPGPGE-TYRMFGMPYSGEPVELELLPPEKMVIPTSGQH-----TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 122
            P PP P E TY MFG PYS + V  +LLP +K+  P   +       D++AEMK +  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q +E
Sbjct:  174 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPGKKLYAPAGEEGDEDAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINSFRPHQARETVIQMLKTQVQE 291          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A329SFW2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFW2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.200e-19
Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 0
Query:   11 PPPPGPGE-TYRMFGMPYSGEPVELELLP-PEKMVIPTSGQH-----TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 122
            P PP P E TY MFG PYS + V  +LLP P K +    G+       D++AEMK +  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q +E
Sbjct:   34 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPGKKLYAPQGEDGGGAPVDYKAEMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 152          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A2P4YE96_9STRA (Mediator of RNA polymerase II transcription subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YE96_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.120e-19
Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 0
Query:   11 PPPPGPGE-TYRMFGMPYSGEPVELELLP-PEKMVIPTSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 122
            P PP P E TY MFG PYS + V  +LLP P++ +        D++AEMK +  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q +E
Sbjct:  585 PAPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDRKLYAQGDDPVDYKAEMKKINRSLLANFVELVDILIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 698          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: M4BN29_HYAAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN29_HYAAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.990e-18
Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 0
Query:   19 TYRMFGMPYSGEPVELELLPPEKMVIPTSGQHT------DFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 122
            TY MFG PYS + V  +LL P K V  T  + +      D++AEMK +  S++AN+ + +++L+  P   +EKL +VE LF+N H+L+N +R HQAR  +++ L  Q +E
Sbjct:   46 TYHMFGSPYSTQDVVPDLLQPGKKVYATESEDSGAAAIVDYKAEMKKINRSLLANFVELVDILIKKPVLFNEKLDEVELLFLNMHNLINAFRPHQARETVIQMLEMQVQE 155          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A3R7NJF2_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NJF2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.190e-17
Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 0
Query:   11 PPPPGPGE-TYRMFGMPYSGEPVELELLPP--EKMVIPTSGQH-----TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 122
            P PP P E TY MFG PYS + V  +LLP   +K+  P           D++A+MK +  S++AN+ + +++L+  P+  +EKL DVE LF+N H+L+N +R HQAR  +++ L+ Q +E
Sbjct:   35 PSPPEPMEPTYHMFGSPYSTQDVVPDLLPQPDKKLYAPAEDAEGDASVVDYKAQMKKINRSLLANFVELVDVLIKKPAMFNEKLDDVELLFLNMHNLINAFRPHQARETVIQMLKTQVQE 154          
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Match: A0A8K1CA38_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA38_PYTOL)

HSP 1 Score: 86.3 bits (212), Expect = 2.260e-17
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 0
Query:   10 PPPPPGPGETYRMFGMPYSGEPVELELLP-PEKMV-------IP-TSGQHTDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLLNRYRAHQARHLILERLRGQAEE 122
            PPPP     TY MFG PYS + V  +LLP P K +       +P  S +  D++A+MK + +S++AN+ + +++L+  PS  +EKL+D+E LF+N H+L+N +R HQAR  I+  L+ Q  E
Sbjct:   43 PPPPETMEPTYHMFGTPYSTKDVVPDLLPQPGKKLYLDGKDSVPGESSEVIDYKAQMKKINHSLLANFTELVDVLIKKPSLFNEKLADLELLFLNMHNLINAFRPHQARETIIHMLKTQINE 164          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11422.920.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU59_9PHAE5.240e-7477.99Mediator of RNA polymerase II transcription subuni... [more]
D8LAU4_ECTSI3.740e-6680.00Mediator of RNA polymerase II transcription subuni... [more]
A0A6U1QAX8_9STRA6.030e-2343.90Mediator of RNA polymerase II transcription subuni... [more]
F0WF41_9STRA1.920e-1937.09Mediator of RNA polymerase II transcription subuni... [more]
H3GJZ4_PHYRM4.060e-1941.53Mediator of RNA polymerase II transcription subuni... [more]
A0A329SFW2_9STRA8.200e-1942.02Mediator of RNA polymerase II transcription subuni... [more]
A0A2P4YE96_9STRA9.120e-1942.11Mediator of RNA polymerase II transcription subuni... [more]
M4BN29_HYAAE7.990e-1840.00Mediator of RNA polymerase II transcription subuni... [more]
A0A3R7NJF2_9STRA1.190e-1740.00Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CA38_PYTOL2.260e-1740.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009244Mediator complex, subunit Med7PFAMPF05983Med7coord: 8..136
e-value: 3.5E-27
score: 95.7
NoneNo IPR availablePANTHERPTHR21428FAMILY NOT NAMEDcoord: 10..149
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 50..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11422contigS-dermatodea_contig11422:545..2206 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11422.920.1mRNA_S-dermatodea_contig11422.920.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11422 545..2206 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11422.920.1 ID=prot_S-dermatodea_contig11422.920.1|Name=mRNA_S-dermatodea_contig11422.920.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp
GGPGAFPLEPPPPPGPGETYRMFGMPYSGEPVELELLPPEKMVIPTSGQH
TDFRAEMKTLLNSIMANYGQFMEMLVSSPSRAHEKLSDVETLFVNFHSLL
NRYRAHQARHLILERLRGQAEENAAVASALEAAMLQCVSAQEGATACLRV
SNGTATVAAGVPMDVVEDYVAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009244Mediatior_Med7
IPR037212Med7/Med21-like