prot_S-dermatodea_contig1141.913.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1141.913.1
Unique Nameprot_S-dermatodea_contig1141.913.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length90
Homology
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BLAST of mRNA_S-dermatodea_contig1141.913.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 4.740e-12
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 0 
Query:    1 MAEEKRVAHLDVSCNPVDKAVADSICECLARPGCTLSSLVVKRCWLTDVAAAAIMTAVASNSILEVLDLSSNEIGGTSDFVA 82
            +AE K V HLD+S N VD+  A  +C+ L R    L SL+VK C ++ +A+AAIM AVA+N+ L+ L+LS N +GGTSD +A
Sbjct:  309 IAEAKGVLHLDLSLNHVDRVSAGLLCKYLTRSS-GLVSLLVKSCGMSALASAAIMVAVATNTTLKTLNLSGNNMGGTSDLIA 389
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BLAST of mRNA_S-dermatodea_contig1141.913.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.070e-5
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 0 
Query:   25 ICECLARPGCTLSSLVVKRCWLTDVAAAAIMTAVASNSILEVLDLSSNEIGGTSDFVA 82
            +CE L R    L SLVVK C ++ +A+A IM AVA+N+ L+ L+LS N +GGTSD +A
Sbjct:  191 LCEYLTRSS-GLFSLVVKSCGMSALASAEIMVAVATNTTLKTLNLSGNNMGGTSDLIA 247
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1141.913.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL9_ECTSI4.740e-1250.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9H7_9PHAE2.070e-551.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..87
e-value: 1.5E-15
score: 58.9
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 61..76
e-value: 0.054
score: 13.6
coord: 34..55
e-value: 1.8
score: 8.9
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 9..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1141contigS-dermatodea_contig1141:15465..17200 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1141.913.1mRNA_S-dermatodea_contig1141.913.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1141 15465..17209 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1141.913.1 ID=prot_S-dermatodea_contig1141.913.1|Name=mRNA_S-dermatodea_contig1141.913.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
MAEEKRVAHLDVSCNPVDKAVADSICECLARPGCTLSSLVVKRCWLTDVA
AAAIMTAVASNSILEVLDLSSNEIGGTSDFVAGSLASVDG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt