mRNA_S-dermatodea_contig11407.909.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11407.909.1
Unique NamemRNA_S-dermatodea_contig11407.909.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Match: A0A6H5J9L9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L9_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.080e-32
Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 1
Query:    1 MAGTDPSPKVSKRKGGLKARKXXXXXXXXXXX-LEGITLTEKGSAGT-ANDGPQARNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR 288
            MAG +PSPKVSKRKGG KARKXXXXXXXXXXX +EGITL EKG AG   +DGPQARNASGIL SEARARD+KIQSFSLSFHSKILVEDS+IE+N+GRR
Sbjct:    1 MAGKEPSPKVSKRKGGAKARKXXXXXXXXXXXGVEGITLKEKGGAGVDGDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 98          
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Match: A0A835ZA40_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA40_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.830e-12
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   97 LEGITLTEKGSAGTANDGPQARNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR 288
            ++G+T+ ++    TA+     R A+G+LVSE RARD+KIQ FSLS  SK LVED+ +ELN+G+R
Sbjct:   34 VDGLTVEDRTDGATADHSESGRMATGVLVSEKRARDIKIQGFSLSLFSKPLVEDTILELNYGQR 97          
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Match: A0A8H7ZNL0_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZNL0_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 1.100e-9
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  133 GTAN--DGPQARNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR 288
            G AN  DG   R+  G+L S+ ++RD+KI+SF+LSFH ++L++D++IELNFGRR
Sbjct:   92 GDANSKDGVADRSCVGVLTSDPKSRDIKIESFTLSFHGRLLIQDATIELNFGRR 145          
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Match: A0A397U9W9_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U9W9_9GLOM)

HSP 1 Score: 63.5 bits (153), Expect = 1.150e-9
Identity = 26/43 (60.47%), Postives = 39/43 (90.70%), Query Frame = 1
Query:  160 RNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR 288
            R A+G+L S++RA+DVKI+ +SLSFH ++L+E+++IELNFGRR
Sbjct:   61 RTANGVLTSQSRAKDVKIEQYSLSFHGRVLIENATIELNFGRR 103          
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Match: A0A8H4A6H7_GIGMA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4A6H7_GIGMA)

HSP 1 Score: 63.2 bits (152), Expect = 1.520e-9
Identity = 26/43 (60.47%), Postives = 38/43 (88.37%), Query Frame = 1
Query:  160 RNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR 288
            R A+G+L S+ RA+DVKI+ +SLSFH ++L+E+++IELNFGRR
Sbjct:   61 RTANGVLTSQTRAKDVKIEQYSLSFHGRVLIENATIELNFGRR 103          
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Match: B6JW30_SCHJY (Ribosome biogenesis ATPase (Fragment) n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6JW30_SCHJY)

HSP 1 Score: 62.8 bits (151), Expect = 2.140e-9
Identity = 29/57 (50.88%), Postives = 45/57 (78.95%), Query Frame = 1
Query:  121 KGSAGTANDGPQ-ARNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR 288
            K  A  + D P   R+ASG+LVS+A +RD+KI+S++LSFH ++L+E+++IELN G+R
Sbjct:   49 KSMANVSTDDPMFERSASGVLVSQAMSRDIKIESYTLSFHGRLLIENATIELNHGQR 105          
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Match: A0A1X2G823_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G823_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 5.410e-9
Identity = 25/43 (58.14%), Postives = 38/43 (88.37%), Query Frame = 1
Query:  160 RNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR 288
            R A+G+ VS+ R+RD+KI S+SL++H ++L+E++SIELNFGRR
Sbjct:   10 RTATGVYVSQERSRDIKIDSYSLNYHGRVLIENASIELNFGRR 52          
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Match: R4XCR2_TAPDE (Ribosome biogenesis ATPase,Arb family ABCF2-like n=2 Tax=Taphrinales TaxID=5008 RepID=R4XCR2_TAPDE)

HSP 1 Score: 61.6 bits (148), Expect = 5.460e-9
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  106 ITLTEKGSAGTANDGPQARNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR 288
            +T  +  +A  A+     R A+G+L S A +RDVKI+SF+LSFH ++L+ED+ IELN+G+R
Sbjct:   43 VTSPDALAAALADSNTFERTATGVLTSAAMSRDVKIESFTLSFHGRLLIEDAVIELNWGQR 103          
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Match: A0A8H7SNK2_9FUNG (Uncharacterized protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SNK2_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 7.700e-9
Identity = 25/43 (58.14%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  160 RNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR 288
            R A+G+  S+ R+RD+KI SFSL+FH ++L++++SIELNFGRR
Sbjct:   53 RTATGVYTSQERSRDIKIDSFSLNFHGRVLIDNASIELNFGRR 95          
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Match: A0A0B7NPT3_9FUNG (Uncharacterized protein n=7 Tax=Mucorineae TaxID=1344963 RepID=A0A0B7NPT3_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 1.390e-8
Identity = 25/43 (58.14%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  160 RNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR 288
            R A+G+  S+ R+RD+KI SFSL+FH ++L++++SIELNFGRR
Sbjct:   54 RTATGVYSSQERSRDIKIDSFSLNFHGRVLIDNASIELNFGRR 96          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11407.909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9L9_9PHAE1.080e-3283.67ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835ZA40_9STRA7.830e-1251.56P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8H7ZNL0_9FUNG1.100e-953.70P-loop containing nucleoside triphosphate hydrolas... [more]
A0A397U9W9_9GLOM1.150e-960.47P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8H4A6H7_GIGMA1.520e-960.47P-loop containing nucleoside triphosphate hydrolas... [more]
B6JW30_SCHJY2.140e-950.88Ribosome biogenesis ATPase (Fragment) n=1 Tax=Schi... [more]
A0A1X2G823_9FUNG5.410e-958.14P-loop containing nucleoside triphosphate hydrolas... [more]
R4XCR2_TAPDE5.460e-947.54Ribosome biogenesis ATPase,Arb family ABCF2-like n... [more]
A0A8H7SNK2_9FUNG7.700e-958.14Uncharacterized protein n=1 Tax=Thamnidium elegans... [more]
A0A0B7NPT3_9FUNG1.390e-858.14Uncharacterized protein n=7 Tax=Mucorineae TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11407contigS-dermatodea_contig11407:3748..4035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.8
Seed ortholog evalue1e-07
Seed eggNOG ortholog4897.EEB05581
KEGG koko:K06185
GOsGO:0000054,GO:0000056,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008144,GO:0008150,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030554,GO:0031503,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0044085,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.Ribosome biogenesis ATPase
EggNOG OGs38D7Z@33154,3MBPV@451866,3NUDQ@4751,3QM35@4890,COG0488@1,KOG0927@2759
COG Functional cat.S
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_001300.1
Exons1
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924201.8145943-CDS-S-dermatodea_contig11407:3747..40351622924201.8145943-CDS-S-dermatodea_contig11407:3747..4035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11407 3748..4035 -
1694079088.7815917-CDS-S-dermatodea_contig11407:3747..40351694079088.7815917-CDS-S-dermatodea_contig11407:3747..4035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11407 3748..4035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11407.909.1prot_S-dermatodea_contig11407.909.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11407 3748..4035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11407.909.1

>prot_S-dermatodea_contig11407.909.1 ID=prot_S-dermatodea_contig11407.909.1|Name=mRNA_S-dermatodea_contig11407.909.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
MAGTDPSPKVSKRKGGLKARKAAKAAEAAAAGLEGITLTEKGSAGTANDG
PQARNASGILVSEARARDVKIQSFSLSFHSKILVEDSSIELNFGRR
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mRNA from alignment at S-dermatodea_contig11407:3748..4035-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11407.909.1 ID=mRNA_S-dermatodea_contig11407.909.1|Name=mRNA_S-dermatodea_contig11407.909.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig11407:3748..4035- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCGGAACGGACCCTAGCCCCAAGGTATCGAAGCGAAAGGGGGGGTT GAAGGCCCGAAAAGCAGCGAAGGCCGCTGAAGCGGCTGCCGCTGGGCTGG AGGGCATCACTCTGACTGAGAAGGGTTCGGCGGGCACAGCTAATGATGGT CCTCAGGCACGGAATGCTTCAGGGATCCTGGTGTCCGAGGCGCGAGCGAG GGATGTGAAGATCCAGTCGTTCTCGCTGAGCTTCCACTCTAAGATTCTGG TGGAGGACTCGTCGATCGAGCTCAACTTCGGGCGAAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11407:3748..4035-

>mRNA_S-dermatodea_contig11407.909.1 ID=mRNA_S-dermatodea_contig11407.909.1|Name=mRNA_S-dermatodea_contig11407.909.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig11407:3748..4035- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCGGAACGGACCCTAGCCCCAAGGTATCGAAGCGAAAGGGGGGGTT
GAAGGCCCGAAAAGCAGCGAAGGCCGCTGAAGCGGCTGCCGCTGGGCTGG
AGGGCATCACTCTGACTGAGAAGGGTTCGGCGGGCACAGCTAATGATGGT
CCTCAGGCACGGAATGCTTCAGGGATCCTGGTGTCCGAGGCGCGAGCGAG
GGATGTGAAGATCCAGTCGTTCTCGCTGAGCTTCCACTCTAAGATTCTGG
TGGAGGACTCGTCGATCGAGCTCAACTTCGGGCGAAGGATGGCCGGAACG
GACCCTAGCCCCAAGGTATCGAAGCGAAAGGGGGGGTTGAAGGCCCGAAA
AGCAGCGAAGGCCGCTGAAGCGGCTGCCGCTGGGCTGGAGGGCATCACTC
TGACTGAGAAGGGTTCGGCGGGCACAGCTAATGATGGTCCTCAGGCACGG
AATGCTTCAGGGATCCTGGTGTCCGAGGCGCGAGCGAGGGATGTGAAGAT
CCAGTCGTTCTCGCTGAGCTTCCACTCTAAGATTCTGGTGGAGGACTCGT
CGATCGAGCTCAACTTCGGGCGAAGG
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