mRNA_S-dermatodea_contig1138.893.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1138.893.1
Unique NamemRNA_S-dermatodea_contig1138.893.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1138.893.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 9.800e-25
Identity = 79/180 (43.89%), Postives = 87/180 (48.33%), Query Frame = 1 
Query:    1 GALVFEGPSTFTLNEAHTSDSTNVGRGGGISNTKSGSITFKSTLSMASHNAAGSFEGDGGAIYTRGLITVEGESSFVDNTSADGGAI-TIEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGVGGAIYNAGDGVLTFGGGDTTFSNNWAAAGGAIYNSD 537
            G L FEG +TF  NE HT DS   G+ G ISNT SG+I FKS L+M  + A G FEG GGAIY RG I VEGES F  NTS+DGG I                                                    GDGG+GGAIYN   GV+T  G  TTF  N A  GGAIY SD
Sbjct:  161 GTLTFEGDATFERNEVHTEDSVEQGKAGAISNTGSGTILFKSKLTMKDNEADGFFEGIGGAIYNRGEIVVEGESLFSLNTSSDGGGIYQTSIGTMTFNGAATFSENSAYDLLGGGLMNDGGVVNINAGSLFELNGASGSGDGGLGGAIYNTNAGVVTLMG-STTFRENAAFMGGAIYTSD 339
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BLAST of mRNA_S-dermatodea_contig1138.893.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 7.050e-24
Identity = 83/207 (40.10%), Postives = 98/207 (47.34%), Query Frame = 1 
Query:    1 GALVFEGPSTFTLNEAHTSDSTNVGRGGGISNTKSGSITFKSTLSMASHNAAGSFEGDGGAIYTRGLITVEGESSFVDNTSADGGAITIEP-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGVGGAIYNAGDGVLTFGGGDTTFSNNWAAAGGAIY-------NSDAASINSLDDGQVIFTANDAD 597
            G L FEG +TF  N  HT DS   G+ G ISNT SG+I FKS L+M  + A G FEG GGAIY RG I V+GES F  NT++DGG I   P                                                GDGG+GGAIYN  +G +T  G  TTF  N A  GGAIY       N +AAS+ +  D   +F  N AD
Sbjct:  161 GTLTFEGDATFERNAVHTEDSVEQGKAGAISNTGSGTIWFKSKLTMKDNEAEGFFEGLGGAIYNRGEIIVDGESLFSLNTASDGGGIYQTPIGKMTFNSMATFSENSAYELRGGGLMNYGGVVNINAGSLFELNGASGSGDGGLGGAIYNGNEGAVTLMG-STTFRENAAYEGGAIYTDDGSVANGEAASVTTFPD-DTVFEDNRAD 365
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BLAST of mRNA_S-dermatodea_contig1138.893.1 vs. uniprot
Match: D7FL58_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL58_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.820e-15
Identity = 47/87 (54.02%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 GALVFEGPSTFTLNEAHTSDSTNVGRGGGISNTKSGSITFKSTLSMASHNAAGSFEGDGGAIYTRGLITVEGESSFVDNTSADGGAI 261
            G L F+G +TF  N AHT  S   G GG ISNT SG+I FKS L+M  + A  +F G GGAIY RG I VEG S F  N +A GG I
Sbjct:   46 GTLTFDGDATFERNVAHTESSNQRGNGGAISNTGSGTILFKSKLTMKDNQADANFAGLGGAIYNRGEIIVEGASLFSLNHAAAGGGI 132
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BLAST of mRNA_S-dermatodea_contig1138.893.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.610e-5
Identity = 54/157 (34.39%), Postives = 64/157 (40.76%), Query Frame = 1 
Query:  136 MASHNAAGSFEGDGGAIYTRGLITVEGESSFVDNTSADGGAI-TIEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGVGGAIYNAGDGVLTFGGGDTTFSNNWAAAGGAIYNSDA--ASINSLDDGQVIFTANDAD 597
            M  ++  G + G GGAIY RG ITVEGES F +N S+DGG I                                                     DGG GGAI+N   GV+T  G  TTF  N A  GGAIY  D   AS+ +  D   +F  N AD
Sbjct:    1 MNENDTDGQYGGLGGAIYNRGEITVEGESLFSENRSSDGGGIYQTSIGIMTFNSMATFFHNVAENLRGGGLMNDGGVVNINAGSLFEQNFAAANADGGRGGAIHNRNGGVVTLMG-PTTFRENGAWWGGAIYTDDGYPASVTTFPD-DTVFEDNSAD 155
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1138.893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FLJ6_ECTSI9.800e-2543.89Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI7.050e-2440.10Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FL58_ECTSI3.820e-1554.02Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG1_ECTSI1.610e-534.39Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1138contigS-dermatodea_contig1138:8994..11489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size597
Cds size597
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1138.893.1prot_S-dermatodea_contig1138.893.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1138 8994..11489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924200.493914-CDS-S-dermatodea_contig1138:8993..91491622924200.493914-CDS-S-dermatodea_contig1138:8993..9149Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 8994..9149 +
1694079087.8054216-CDS-S-dermatodea_contig1138:8993..91491694079087.8054216-CDS-S-dermatodea_contig1138:8993..9149Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 8994..9149 +
1622924200.5112972-CDS-S-dermatodea_contig1138:9552..96421622924200.5112972-CDS-S-dermatodea_contig1138:9552..9642Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 9553..9642 +
1694079087.813597-CDS-S-dermatodea_contig1138:9552..96421694079087.813597-CDS-S-dermatodea_contig1138:9552..9642Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 9553..9642 +
1622924200.5222714-CDS-S-dermatodea_contig1138:10271..103551622924200.5222714-CDS-S-dermatodea_contig1138:10271..10355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 10272..10355 +
1694079087.8213577-CDS-S-dermatodea_contig1138:10271..103551694079087.8213577-CDS-S-dermatodea_contig1138:10271..10355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 10272..10355 +
1622924200.5327647-CDS-S-dermatodea_contig1138:10746..108831622924200.5327647-CDS-S-dermatodea_contig1138:10746..10883Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 10747..10883 +
1694079087.8375807-CDS-S-dermatodea_contig1138:10746..108831694079087.8375807-CDS-S-dermatodea_contig1138:10746..10883Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 10747..10883 +
1622924200.5456502-CDS-S-dermatodea_contig1138:11359..114891622924200.5456502-CDS-S-dermatodea_contig1138:11359..11489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 11360..11489 +
1694079087.8491514-CDS-S-dermatodea_contig1138:11359..114891694079087.8491514-CDS-S-dermatodea_contig1138:11359..11489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 11360..11489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1138.893.1

>prot_S-dermatodea_contig1138.893.1 ID=prot_S-dermatodea_contig1138.893.1|Name=mRNA_S-dermatodea_contig1138.893.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=199bp
GALVFEGPSTFTLNEAHTSDSTNVGRGGGISNTKSGSITFKSTLSMASHN
AAGSFEGDGGAIYTRGLITVEGESSFVDNTSADGGAITIEPPGTVTLLGF
ATFSENLCKDARGGAVFNLGALNVLGGGLFDDNYASSAGDGGVGGAIYNA
GDGVLTFGGGDTTFSNNWAAAGGAIYNSDAASINSLDDGQVIFTANDAD
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mRNA from alignment at S-dermatodea_contig1138:8994..11489+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1138.893.1 ID=mRNA_S-dermatodea_contig1138.893.1|Name=mRNA_S-dermatodea_contig1138.893.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2496bp|location=Sequence derived from alignment at S-dermatodea_contig1138:8994..11489+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCCTTGGTGTTCGAAGGACCGTCGACGTTTACGCTAAACGAGGCACA
CACGAGTGATTCGACCAACGTTGGGAGGGGCGGCGGCATCTCCAACACGA
AAAGCGGATCGATCACCTTCAAATCCACGCTCTCCATGGCCAGTCACAAC
GCCGCGGTAGGCACACGCGACAATCTGTACGTAGCCGGGCTGAGGGCGGA
TAGCCCGTCTCGTCTACCCTGCTCGCGCGGTTGCGGAGGTCTAGCTTTTG
TTGACTGGAGCTCGTCGTATATTTGGCTTCGCGTAATCGCGTTTCTTATC
GGGCAAATTTAAGTCCCATTAGTGGTCGCAACAACCGGATTGCCCCGTTC
GCTTCGCCGTACTCTCTTCTTCGATATTCGTCACGCTTTTGGTGTAACCT
TCCCTTTCTCAGGTCAAGAATCCCCACTCGAGAAAGGCAGGGAGGAAGCG
TGTACGCAACGAAACGGTGGTCATGTTGCGGCGGCGCCTTTACCCCTCTC
CTGCCCCCCCTCCCTCCGCCCTTCCCTGCCTGGGCTGTTGTAACGTTGGA
ATCGCGCAGGGAAGCTTCGAGGGGGATGGCGGCGCCATCTACACCCGCGG
ACTCATCACCGTCGAGGGAGAGTCTTCCTTTGTCGACAATACGTCGGCGG
TGAGGAAATATCAAAAGGGAGAGGGAGGAGTGATGCTCTCCTATAATACT
TGATATCTCCCTGCCCGCTGCAAGTAAATGTCGGTTGCGTTTGGTTTGGC
TTTGCGTTTCGCCAACATGCCGCCAGCGGGAGGCTTCGCGAATCACACGC
GACACTGTCAGCTGCCGTGTATACGGGGTAATGTGGCGCATCTGCCGGTG
CGTGTGGAACACGGAAAACGGGTTTGGATCGCCCTCGAGGTACTCTTGAC
ACTATCTCTGCTGGGGGAAAGACGCAGAAGGATGATAAGACTTGTTCTTC
GTCGTTTGTCATGTTTGTGGTCGTTGAAGGGGTCTACACGTTCCGGTCGT
GTGGTTGCGGTTTGTCCCACTGACCCCTCCCTGTCTGCCATATTGAGCTA
GCATATGGACTCAACCACCGATAGGGGTAACCAGCCTTGACGCGTACTTT
CCTGCAGAGTGGCGACTCCCTCGTAGCCGTGAGCTGTCATAAGGCTGGGA
GGGTCGTGGTCGAAAGGCACTTCTCCAAGCCAACACTTTTGGAACCAACC
CCCAACATGGAACGGTTCTTGACGACACTCGGGTTCCTTCAAAGCTAACC
CTTGTCTCCCTCCCTGCCGTGATCCCAGGATGGTGGAGCCATCACGATAG
AGCCACCGGGGACCGTGACCCTGCTCGGCTTCGCTACCTTCAGCGAGAAT
CTCTGCAAAGATGTGAGAAATGAGCGCACCTGTGTGACATCTCCCAGCCT
CCACACAGGCATGGGATACGGGCGCGGACCCACCGCGCGATGGTGGCGTG
CTTTTTTCATGGCAAACCAGGCTCCCGGTGCATGAAAGTGCAGCCCTAAT
TCCCGTGCACCAACGTGTGTACCCGGTTGTTCAAACCGTGAATCGCCGAC
CAACGACCGTGCGTGAAACGCTGTTGCTACTTATCTCACACAGCGCGGCT
TAAAGACGAGTTTCCGCTGGTGTTTCCAAGTCCGCCACCACGCCGTAGAC
TCGTAATTCACCCCCTCCTCGCCCCTCCCACCCCCCCCCCTGTCCCGTCC
CTTCACCACCATGTCTTAACTGCTTCGTTGTCGCATTGTTGCCTGCGGAT
TAGGCCAGGGGAGGCGCGGTTTTCAACTTGGGCGCCTTGAACGTGCTAGG
CGGGGGCCTGTTTGATGATAACTACGCCAGCAGCGCGGGAGATGGTGGGG
TTGGCGGAGCGATCTACAACGCCGGAGATGGTGTATTGACGTAAGCCCGC
TCCGCTAATGCCAGGAAGAGCCTAGTTCGCCGGGCTTGCCGCCACCCCCC
ACTCGGCACTAAATAACTTGTTACAATATATGACGATCAGAGCAGGACTT
CCTATAGAAACCAACAATACAATCGAAACAGCGAAACTCTGATAATTGTT
ATGTACTGGGCTTTGTGTACGCGCTGCTGTCGTAGCTTGTGACCTGATGT
TTTTCACCACTGCCGTAGCCCATGCTGTAGTTTCGCCTCTCCCCCCTTTT
TGTTTTTTGTCACATCCGCAAGCTTGTTTTTTATCGGGCAAGGCGAGGGT
GACACTCGCGAGCTCTACTGTAGGTAAAAACGAAGGCTACAATAGCGGCC
CATGCTTGTTCCTGGTCCAGAGACTGCTGCGGGATGTTGGGAGGTCGCGC
CATCATCACCCGCGCTCTTTAATCGTTTTATTTTGTATCCCTTATTTCAC
GACAACACCCGTGCAGGTTCGGTGGGGGAGACACTACCTTCAGCAACAAC
TGGGCTGCCGCCGGCGGCGCCATCTACAACTCCGACGCCGCGAGCATCAA
CTCCCTCGACGATGGCCAAGTAATTTTTACCGCTAACGATGCCGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1138:8994..11489+

>mRNA_S-dermatodea_contig1138.893.1 ID=mRNA_S-dermatodea_contig1138.893.1|Name=mRNA_S-dermatodea_contig1138.893.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at S-dermatodea_contig1138:8994..11489+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCCTTGGTGTTCGAAGGACCGTCGACGTTTACGCTAAACGAGGCACA
CACGAGTGATTCGACCAACGTTGGGAGGGGCGGCGGCATCTCCAACACGA
AAAGCGGATCGATCACCTTCAAATCCACGCTCTCCATGGCCAGTCACAAC
GCCGCGGGTGCCTTGGTGTTCGAAGGACCGTCGACGTTTACGCTAAACGA
GGCACACACGAGTGATTCGACCAACGTTGGGAGGGGCGGCGGCATCTCCA
ACACGAAAAGCGGATCGATCACCTTCAAATCCACGCTCTCCATGGCCAGT
CACAACGCCGCGGGAAGCTTCGAGGGGGATGGCGGCGCCATCTACACCCG
CGGACTCATCACCGTCGAGGGAGAGTCTTCCTTTGTCGACAATACGTCGG
CGGGAAGCTTCGAGGGGGATGGCGGCGCCATCTACACCCGCGGACTCATC
ACCGTCGAGGGAGAGTCTTCCTTTGTCGACAATACGTCGGCGGATGGTGG
AGCCATCACGATAGAGCCACCGGGGACCGTGACCCTGCTCGGCTTCGCTA
CCTTCAGCGAGAATCTCTGCAAAGATGATGGTGGAGCCATCACGATAGAG
CCACCGGGGACCGTGACCCTGCTCGGCTTCGCTACCTTCAGCGAGAATCT
CTGCAAAGATGCCAGGGGAGGCGCGGTTTTCAACTTGGGCGCCTTGAACG
TGCTAGGCGGGGGCCTGTTTGATGATAACTACGCCAGCAGCGCGGGAGAT
GGTGGGGTTGGCGGAGCGATCTACAACGCCGGAGATGGTGTATTGACGCC
AGGGGAGGCGCGGTTTTCAACTTGGGCGCCTTGAACGTGCTAGGCGGGGG
CCTGTTTGATGATAACTACGCCAGCAGCGCGGGAGATGGTGGGGTTGGCG
GAGCGATCTACAACGCCGGAGATGGTGTATTGACGTTCGGTGGGGGAGAC
ACTACCTTCAGCAACAACTGGGCTGCCGCCGGCGGCGCCATCTACAACTC
CGACGCCGCGAGCATCAACTCCCTCGACGATGGCCAAGTAATTTTTACCG
CTAACGATGCCGACGTTCGGTGGGGGAGACACTACCTTCAGCAACAACTG
GGCTGCCGCCGGCGGCGCCATCTACAACTCCGACGCCGCGAGCATCAACT
CCCTCGACGATGGCCAAGTAATTTTTACCGCTAACGATGCCGAC
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