mRNA_S-dermatodea_contig11378.889.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11378.889.1
Unique NamemRNA_S-dermatodea_contig11378.889.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11378.889.1 vs. uniprot
Match: A0A6H5KNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU8_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.140e-46
Identity = 121/238 (50.84%), Postives = 151/238 (63.45%), Query Frame = 1 
Query:  205 PLCSGDPARVDELISEAKQAKAAEWALRQEAATLQARKARLERKVLKLQRDKEDMTAGHRDQLERLRRELEDDARDGARRLESELERGHAKSMDGLRLTLRSETERLAGETQRLRDDLERAKHAQSTAANKKKALGSSGGGGVGGRSHSAGTNPNGVGGLFGDDAAGDAAAPVPESP-GFWKSFTRTFSPRDF-DGETGSAGGXXXXXXXXXXVPPPALLVLAAVPLFCFYRRWQNRR 912
            PLCSG+P ++D L+SEA++AK AE ALR EAA L+ RKA L+  + +L+RDK D+T  H  Q+ERLRR+L++DARDG RRLESELE+GHAKSMD LRLTL++E E LAGET+RLR+DL+RA+ A+S A               GG+S +               A     A VP  P GFW S T  F+PRD  DG     G           VPPPALLVLAAVPLFCF +R + +R
Sbjct:   91 PLCSGEPGKIDGLVSEAREAKEAEGALRAEAAILRERKAVLDADIRRLERDKADLTEEHLAQMERLRRDLQEDARDGKRRLESELEKGHAKSMDRLRLTLKAEAESLAGETKRLREDLQRAREAKSAAXXXXXXXXXXSPRTKGGKSSARSI------------ARDTPPAAVPALPAGFWNSLTSAFTPRDLLDGVAVGVGDGGNGA-----VPPPALLVLAAVPLFCFIKRRRIQR 311
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BLAST of mRNA_S-dermatodea_contig11378.889.1 vs. uniprot
Match: D7G1T9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T9_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 9.340e-29
Identity = 88/178 (49.44%), Postives = 104/178 (58.43%), Query Frame = 1 
Query:  391 LERLRRELEDDARDGARRLESELERGHAKSMDGLRLTLRSETERLAGETQRLRDDLERAKHAQSTAANKKKALGSSGGGGVGGRSHSAGTNPNGVGGLFG--DDAAGDAAAPVPESP-GFWKSFTRTFSPRDF-DGETGSAGGXXXXXXXXXXVPPPALLVLAAVPLFCFYRRWQNRR 912
            +ERLRR+L++DARDG RRLESELE+GHAKSMD LRLTL++E E LAGET+RLR+DL+RA+ A+S                           P   GG       A    AA VP  P GFW S T  F+PRD  DG     G           VPPPALLVLAAVPLFCF +RW+ +R
Sbjct:    1 MERLRRDLQEDARDGKRRLESELEKGHAKSMDRLRLTLKAEAESLAGETKRLREDLQRAREAKSAXXXXXXXXX---------------XXPRAKGGKSSARSIARDTPAAAVPALPAGFWNSLTSAFTPRDLLDGVAVGVGDGGNGA-----VPPPALLVLAAVPLFCFLKRWRIQR 158
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11378.889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNU8_9PHAE2.140e-4650.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T9_ECTSI9.340e-2949.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11378contigS-dermatodea_contig11378:897..1811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size915
Cds size915
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924200.3085194-CDS-S-dermatodea_contig11378:896..18111622924200.3085194-CDS-S-dermatodea_contig11378:896..1811Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11378 897..1811 -
1694079087.7005513-CDS-S-dermatodea_contig11378:896..18111694079087.7005513-CDS-S-dermatodea_contig11378:896..1811Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11378 897..1811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11378.889.1prot_S-dermatodea_contig11378.889.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11378 897..1811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11378.889.1

>prot_S-dermatodea_contig11378.889.1 ID=prot_S-dermatodea_contig11378.889.1|Name=mRNA_S-dermatodea_contig11378.889.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=305bp
AAAAAETAAGSRPDDVVFSHPGAFGVAMLPPKAVKAGFFARRRRKASGKS
PTDDPNASLTEMQQQQQQPLCSGDPARVDELISEAKQAKAAEWALRQEAA
TLQARKARLERKVLKLQRDKEDMTAGHRDQLERLRRELEDDARDGARRLE
SELERGHAKSMDGLRLTLRSETERLAGETQRLRDDLERAKHAQSTAANKK
KALGSSGGGGVGGRSHSAGTNPNGVGGLFGDDAAGDAAAPVPESPGFWKS
FTRTFSPRDFDGETGSAGGAGGGQGEGGGVPPPALLVLAAVPLFCFYRRW
QNRR*
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mRNA from alignment at S-dermatodea_contig11378:897..1811-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11378.889.1 ID=mRNA_S-dermatodea_contig11378.889.1|Name=mRNA_S-dermatodea_contig11378.889.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=915bp|location=Sequence derived from alignment at S-dermatodea_contig11378:897..1811- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGGCGGCGGCGGAGACTGCTGCAGGTTCCCGGCCGGATGATGTCGT
GTTCTCGCACCCAGGAGCGTTTGGAGTGGCGATGCTTCCACCCAAAGCTG
TCAAGGCTGGCTTCTTTGCGCGCCGCCGGCGGAAGGCTAGCGGCAAAAGC
CCCACCGACGACCCAAACGCATCCCTCACCGAGATGCAGCAGCAGCAGCA
GCAGCCACTCTGCTCCGGGGATCCGGCGCGCGTGGACGAGCTGATCTCAG
AGGCAAAGCAGGCCAAAGCCGCGGAGTGGGCCCTTCGGCAGGAAGCTGCC
ACACTGCAGGCGCGAAAAGCTCGCCTCGAGAGGAAGGTCCTGAAGCTCCA
GAGAGATAAGGAGGACATGACAGCCGGCCACCGCGACCAGCTGGAGCGAT
TGCGTCGGGAGCTCGAGGACGATGCGAGGGATGGCGCGCGCCGCCTCGAG
TCCGAGCTCGAGAGAGGGCACGCCAAGTCCATGGACGGCCTGCGCCTCAC
CCTGCGATCGGAGACCGAGCGCCTCGCTGGGGAGACCCAGCGTCTCCGCG
ACGACCTCGAGCGCGCCAAGCACGCGCAATCCACGGCAGCAAACAAGAAG
AAGGCACTCGGCAGTAGTGGCGGGGGCGGGGTCGGCGGCCGCTCCCACTC
GGCCGGGACAAATCCTAACGGCGTTGGCGGTCTATTTGGCGATGACGCTG
CGGGGGACGCTGCCGCGCCAGTACCGGAATCTCCTGGCTTTTGGAAGTCG
TTCACGAGGACGTTCTCGCCCCGAGATTTCGACGGCGAAACGGGATCAGC
GGGCGGTGCGGGCGGCGGCCAGGGGGAGGGTGGCGGCGTACCGCCGCCGG
CGCTGCTGGTGCTCGCCGCGGTGCCGCTGTTCTGCTTCTACAGGCGCTGG
CAGAATCGCCGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11378:897..1811-

>mRNA_S-dermatodea_contig11378.889.1 ID=mRNA_S-dermatodea_contig11378.889.1|Name=mRNA_S-dermatodea_contig11378.889.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at S-dermatodea_contig11378:897..1811- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGGCGGCGGCGGAGACTGCTGCAGGTTCCCGGCCGGATGATGTCGT
GTTCTCGCACCCAGGAGCGTTTGGAGTGGCGATGCTTCCACCCAAAGCTG
TCAAGGCTGGCTTCTTTGCGCGCCGCCGGCGGAAGGCTAGCGGCAAAAGC
CCCACCGACGACCCAAACGCATCCCTCACCGAGATGCAGCAGCAGCAGCA
GCAGCCACTCTGCTCCGGGGATCCGGCGCGCGTGGACGAGCTGATCTCAG
AGGCAAAGCAGGCCAAAGCCGCGGAGTGGGCCCTTCGGCAGGAAGCTGCC
ACACTGCAGGCGCGAAAAGCTCGCCTCGAGAGGAAGGTCCTGAAGCTCCA
GAGAGATAAGGAGGACATGACAGCCGGCCACCGCGACCAGCTGGAGCGAT
TGCGTCGGGAGCTCGAGGACGATGCGAGGGATGGCGCGCGCCGCCTCGAG
TCCGAGCTCGAGAGAGGGCACGCCAAGTCCATGGACGGCCTGCGCCTCAC
CCTGCGATCGGAGACCGAGCGCCTCGCTGGGGAGACCCAGCGTCTCCGCG
ACGACCTCGAGCGCGCCAAGCACGCGCAATCCACGGCAGCAAACAAGAAG
AAGGCACTCGGCAGTAGTGGCGGGGGCGGGGTCGGCGGCCGCTCCCACTC
GGCCGGGACAAATCCTAACGGCGTTGGCGGTCTATTTGGCGATGACGCTG
CGGGGGACGCTGCCGCGCCAGTACCGGAATCTCCTGGCTTTTGGAAGTCG
TTCACGAGGACGTTCTCGCCCCGAGATTTCGACGGCGAAACGGGATCAGC
GGGCGGTGCGGGCGGCGGCCAGGGGGAGGGTGGCGGCGTACCGCCGCCGG
CGCTGCTGGTGCTCGCCGCGGTGCCGCTGTTCTGCTTCTACAGGCGCTGG
CAGAATCGCCGGTGAGCGGCGGCGGCGGCGGAGACTGCTGCAGGTTCCCG
GCCGGATGATGTCGTGTTCTCGCACCCAGGAGCGTTTGGAGTGGCGATGC
TTCCACCCAAAGCTGTCAAGGCTGGCTTCTTTGCGCGCCGCCGGCGGAAG
GCTAGCGGCAAAAGCCCCACCGACGACCCAAACGCATCCCTCACCGAGAT
GCAGCAGCAGCAGCAGCAGCCACTCTGCTCCGGGGATCCGGCGCGCGTGG
ACGAGCTGATCTCAGAGGCAAAGCAGGCCAAAGCCGCGGAGTGGGCCCTT
CGGCAGGAAGCTGCCACACTGCAGGCGCGAAAAGCTCGCCTCGAGAGGAA
GGTCCTGAAGCTCCAGAGAGATAAGGAGGACATGACAGCCGGCCACCGCG
ACCAGCTGGAGCGATTGCGTCGGGAGCTCGAGGACGATGCGAGGGATGGC
GCGCGCCGCCTCGAGTCCGAGCTCGAGAGAGGGCACGCCAAGTCCATGGA
CGGCCTGCGCCTCACCCTGCGATCGGAGACCGAGCGCCTCGCTGGGGAGA
CCCAGCGTCTCCGCGACGACCTCGAGCGCGCCAAGCACGCGCAATCCACG
GCAGCAAACAAGAAGAAGGCACTCGGCAGTAGTGGCGGGGGCGGGGTCGG
CGGCCGCTCCCACTCGGCCGGGACAAATCCTAACGGCGTTGGCGGTCTAT
TTGGCGATGACGCTGCGGGGGACGCTGCCGCGCCAGTACCGGAATCTCCT
GGCTTTTGGAAGTCGTTCACGAGGACGTTCTCGCCCCGAGATTTCGACGG
CGAAACGGGATCAGCGGGCGGTGCGGGCGGCGGCCAGGGGGAGGGTGGCG
GCGTACCGCCGCCGGCGCTGCTGGTGCTCGCCGCGGTGCCGCTGTTCTGC
TTCTACAGGCGCTGGCAGAATCGCCGGTGA
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