mRNA_S-dermatodea_contig11372.884.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11372.884.1
Unique NamemRNA_S-dermatodea_contig11372.884.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11372.884.1 vs. uniprot
Match: A0A6H5K0S5_9PHAE (Codanin-1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0S5_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.310e-14
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    7 PVKAFDISSAQEFPSLAPVDAPLRSRGATKQRRRIRPTTVSESDKPIEGDITVFGA--SPAPSWGRMDDTATRRLPLHA 237
            P  AFDISSA +FP+L   + P   R A KQ+RRIRPT +S +DKP+EGDIT  GA  + APS+ +  + A  RL   A
Sbjct:  108 PTTAFDISSADDFPALPMGEVPRGMRPANKQKRRIRPTPLSNADKPLEGDITALGALNTAAPSFDKSGEVANARLTFRA 186
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11372.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0S5_9PHAE1.310e-1450.63Codanin-1_C domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11372contigS-dermatodea_contig11372:534..1410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size252
Cds size249
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11372.884.1prot_S-dermatodea_contig11372.884.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11372 535..1410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924199.8712058-CDS-S-dermatodea_contig11372:534..6331622924199.8712058-CDS-S-dermatodea_contig11372:534..633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11372 535..633 -
1694079087.407227-CDS-S-dermatodea_contig11372:534..6331694079087.407227-CDS-S-dermatodea_contig11372:534..633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11372 535..633 -
1622924199.9234278-CDS-S-dermatodea_contig11372:1059..11221622924199.9234278-CDS-S-dermatodea_contig11372:1059..1122Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11372 1060..1122 -
1694079087.4153748-CDS-S-dermatodea_contig11372:1059..11221694079087.4153748-CDS-S-dermatodea_contig11372:1059..1122Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11372 1060..1122 -
1622924199.9343297-CDS-S-dermatodea_contig11372:1323..14101622924199.9343297-CDS-S-dermatodea_contig11372:1323..1410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11372 1324..1410 -
1694079087.424855-CDS-S-dermatodea_contig11372:1323..14101694079087.424855-CDS-S-dermatodea_contig11372:1323..1410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11372 1324..1410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11372.884.1

>prot_S-dermatodea_contig11372.884.1 ID=prot_S-dermatodea_contig11372.884.1|Name=mRNA_S-dermatodea_contig11372.884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
PSPVKAFDISSAQEFPSLAPVDAPLRSRGATKQRRRIRPTTVSESDKPIE
GDITVFGASPAPSWGRMDDTATRRLPLHAPRFG
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mRNA from alignment at S-dermatodea_contig11372:534..1410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11372.884.1 ID=mRNA_S-dermatodea_contig11372.884.1|Name=mRNA_S-dermatodea_contig11372.884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=877bp|location=Sequence derived from alignment at S-dermatodea_contig11372:534..1410- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTCACCCGTGAAGGCGTTCGACATTTCGTCTGCACAAGAATTCCCCTC
CCTGGCGCCTGTGGACGCTCCTCTCCGTAGTCGCGGGGTGAACGATATGT
TGAACACCAAGAGTCGTGTTGGTAGCAGGAATGATGCACGAAGATGGTCC
CTGATCAATGTTTGAATATTATTCTTAACATACAAAGTAGAGGGGGTTGA
TAGCTTTAGGATATATTTAGCTGCTTTTCCCTTTCTATATCCTAAAATTT
GCACAGTGACGAAGTTTTGCCTTTTACTATGATGCCAGGCAACCAAGCAA
AGACGGCGTATTCGGCCTACGACCGTGAGCGAGTCTGACAAGCCCATCGA
GGTGAGCACAGCGTGCGGTATTCGATTAAGGTTCCAGACAGTCGTACAGA
ACACTCCTGTGTTCCTGGTATGCATATCTCATAACAACGGCAAAGATCGC
GCAGAATGCTGAGTTCATCCCTGGACTATGACAGGGTAGTCACGGTGGAG
GCTCACACTGCGTGCAATACTCAGGAATCCCACTTATAATACTTGTACAT
AGCTGGATGGTGACAAAAAGGCGAGTTTTCGCGCGGTAGGCAGAGGGAGG
CCCTCCTGCTCGCCTATTGAAGCGCAACGCCTTTCACGTGTTCACTCGCG
GATTCTCGGAGCCCCGGAACAGTTGTTCAACGTTCGACGCCACACGTCGT
GCGGTAAAGACTGCGGTATTCTGAACCATGCTATACGTGCGATACAGACA
GCATACTCTATTCGATTGACCGTCCAGGGAGACATCACGGTTTTCGGTGC
AAGCCCCGCACCATCGTGGGGTAGGATGGACGATACCGCCACAAGACGAC
TGCCACTTCATGCACCACGGTTTGGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11372:534..1410-

>mRNA_S-dermatodea_contig11372.884.1 ID=mRNA_S-dermatodea_contig11372.884.1|Name=mRNA_S-dermatodea_contig11372.884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig11372:534..1410- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTCACCCGTGAAGGCGTTCGACATTTCGTCTGCACAAGAATTCCCCTC
CCTGGCGCCTGTGGACGCTCCTCTCCGTAGTCGCGGGCCTTCACCCGTGA
AGGCGTTCGACATTTCGTCTGCACAAGAATTCCCCTCCCTGGCGCCTGTG
GACGCTCCTCTCCGTAGTCGCGGGGCAACCAAGCAAAGACGGCGTATTCG
GCCTACGACCGTGAGCGAGTCTGACAAGCCCATCGAGGCAACCAAGCAAA
GACGGCGTATTCGGCCTACGACCGTGAGCGAGTCTGACAAGCCCATCGAG
GGAGACATCACGGTTTTCGGTGCAAGCCCCGCACCATCGTGGGGTAGGAT
GGACGATACCGCCACAAGACGACTGCCACTTCATGCACCACGGTTTGGTG
GAGACATCACGGTTTTCGGTGCAAGCCCCGCACCATCGTGGGGTAGGATG
GACGATACCGCCACAAGACGACTGCCACTTCATGCACCACGGTTTGGT
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