mRNA_S-dermatodea_contig11359.877.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11359.877.1
Unique NamemRNA_S-dermatodea_contig11359.877.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11359.877.1 vs. uniprot
Match: D7G4M7_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M7_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 5.410e-34
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:   46 QMLSVMDTMFDPDNGLSVAERPKALADRLGGLWEMVSEVSENLPPATLRWRIQNWLLAGQGRVDKGLADMKVGFAVFAG 282
            QM+SV+D M DP+NG+ V +RPKALADRLGGLWEM+SEVSENLPPATLRWRIQNWL AGQGRV++GLADMKV   + AG
Sbjct:  282 QMMSVVDVMIDPNNGIKVTDRPKALADRLGGLWEMISEVSENLPPATLRWRIQNWLAAGQGRVERGLADMKVPVVIVAG 360
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11359.877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4M7_ECTSI5.410e-3477.22AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11359contigS-dermatodea_contig11359:6257..6553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1.1e-28
Seed eggNOG ortholog2880.D7G4M7
GOsGO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010287,GO:0016101,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019432,GO:0033306,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0071704,GO:1901576,GO:1901615,GO:1903173
EggNOG free text desc.fatty alcohol metabolic process
EggNOG OGs2QQUD@2759,COG0204@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size299
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924199.3265643-CDS-S-dermatodea_contig11359:6256..65531622924199.3265643-CDS-S-dermatodea_contig11359:6256..6553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11359 6257..6553 +
1694079086.9638174-CDS-S-dermatodea_contig11359:6256..65531694079086.9638174-CDS-S-dermatodea_contig11359:6256..6553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11359 6257..6553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11359.877.1prot_S-dermatodea_contig11359.877.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11359 6257..6553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11359.877.1

>prot_S-dermatodea_contig11359.877.1 ID=prot_S-dermatodea_contig11359.877.1|Name=mRNA_S-dermatodea_contig11359.877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=99bp
LLCACSIRCRRVLGFQMLSVMDTMFDPDNGLSVAERPKALADRLGGLWEM
VSEVSENLPPATLRWRIQNWLLAGQGRVDKGLADMKVGFAVFAGGNGGD
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mRNA from alignment at S-dermatodea_contig11359:6257..6553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11359.877.1 ID=mRNA_S-dermatodea_contig11359.877.1|Name=mRNA_S-dermatodea_contig11359.877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at S-dermatodea_contig11359:6257..6553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCTCTGTGCATGCTCAATCCGCTGCCGTCGCGTGCTGGGTTTCCAGAT
GCTGAGCGTTATGGACACCATGTTCGACCCTGACAACGGTCTAAGCGTCG
CCGAACGGCCCAAGGCGTTGGCAGACAGGCTTGGCGGGCTCTGGGAAATG
GTGTCGGAAGTTTCCGAGAACCTTCCTCCGGCCACTTTACGGTGGAGGAT
CCAGAACTGGCTCTTGGCGGGGCAGGGGAGGGTGGACAAAGGTCTCGCGG
ACATGAAGGTGGGTTTTGCGGTTTTTGCTGGTGGTAATGGTGGGGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11359:6257..6553+

>mRNA_S-dermatodea_contig11359.877.1 ID=mRNA_S-dermatodea_contig11359.877.1|Name=mRNA_S-dermatodea_contig11359.877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at S-dermatodea_contig11359:6257..6553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCTCTGTGCATGCTCAATCCGCTGCCGTCGCGTGCTGGGTTTCCAGAT
GCTGAGCGTTATGGACACCATGTTCGACCCTGACAACGGTCTAAGCGTCG
CCGAACGGCCCAAGGCGTTGGCAGACAGGCTTGGCGGGCTCTGGGAAATG
GTGTCGGAAGTTTCCGAGAACCTTCCTCCGGCCACTTTACGGTGGAGGAT
CCAGAACTGGCTCTTGGCGGGGCAGGGGAGGGTGGACAAAGGTCTCGCGG
ACATGAAGGTGGGTTTTGCGGTTTTTGCTGGTGGTAATGGTGGGGATCTC
CTCTGTGCATGCTCAATCCGCTGCCGTCGCGTGCTGGGTTTCCAGATGCT
GAGCGTTATGGACACCATGTTCGACCCTGACAACGGTCTAAGCGTCGCCG
AACGGCCCAAGGCGTTGGCAGACAGGCTTGGCGGGCTCTGGGAAATGGTG
TCGGAAGTTTCCGAGAACCTTCCTCCGGCCACTTTACGGTGGAGGATCCA
GAACTGGCTCTTGGCGGGGCAGGGGAGGGTGGACAAAGGTCTCGCGGACA
TGAAGGTGGGTTTTGCGGTTTTTGCTGGTGGTAATGGTGGGGAT
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