mRNA_S-dermatodea_contig11323.856.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11323.856.1
Unique NamemRNA_S-dermatodea_contig11323.856.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11323.856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11323contigS-dermatodea_contig11323:2312..3131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size445
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11323.856.1prot_S-dermatodea_contig11323.856.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11323 2382..3110 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924197.6935205-UTR-S-dermatodea_contig11323:2311..23811622924197.6935205-UTR-S-dermatodea_contig11323:2311..2381Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11323 2312..2381 -
1694079085.6585388-UTR-S-dermatodea_contig11323:2311..23811694079085.6585388-UTR-S-dermatodea_contig11323:2311..2381Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11323 2312..2381 -
1622924197.7213705-UTR-S-dermatodea_contig11323:3110..31311622924197.7213705-UTR-S-dermatodea_contig11323:3110..3131Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11323 3111..3131 -
1694079085.6899157-UTR-S-dermatodea_contig11323:3110..31311694079085.6899157-UTR-S-dermatodea_contig11323:3110..3131Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11323 3111..3131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924197.7043865-CDS-S-dermatodea_contig11323:2381..24691622924197.7043865-CDS-S-dermatodea_contig11323:2381..2469Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11323 2382..2469 -
1694079085.6674874-CDS-S-dermatodea_contig11323:2381..24691694079085.6674874-CDS-S-dermatodea_contig11323:2381..2469Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11323 2382..2469 -
1622924197.7136307-CDS-S-dermatodea_contig11323:2844..31101622924197.7136307-CDS-S-dermatodea_contig11323:2844..3110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11323 2845..3110 -
1694079085.675013-CDS-S-dermatodea_contig11323:2844..31101694079085.675013-CDS-S-dermatodea_contig11323:2844..3110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11323 2845..3110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11323.856.1

>prot_S-dermatodea_contig11323.856.1 ID=prot_S-dermatodea_contig11323.856.1|Name=mRNA_S-dermatodea_contig11323.856.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MSVEQVENTPNDSSTQAPAPGASNVQLKERRRDGLLYPRPSVCDAWVTCH
GLPGPTPRYELDDLQAEMTDRWSGAFLPMSKALISELAGLEEYGRLVFER
TFELSVRKGVAGRCRYY*
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mRNA from alignment at S-dermatodea_contig11323:2312..3131-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11323.856.1 ID=mRNA_S-dermatodea_contig11323.856.1|Name=mRNA_S-dermatodea_contig11323.856.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=820bp|location=Sequence derived from alignment at S-dermatodea_contig11323:2312..3131- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATCCAAGCTCAACAAGGAAATGTCCGTCGAACAGGTCGAGAATACCCC
GAACGATTCTTCTACACAGGCACCCGCACCAGGCGCTTCCAATGTGCAGC
TCAAGGAGCGAAGGCGAGACGGGTTACTCTACCCACGGCCGAGTGTGTGC
GACGCGTGGGTTACGTGCCATGGGCTTCCCGGGCCGACGCCGCGGTACGA
GCTGGACGACCTGCAGGCGGAGATGACTGACCGCTGGTCTGGAGCCTTCT
TACCGATGTCCAAGGCGTTGATCTCCGAACTGGCAGGGCGAGTTTACCTA
CCCTCGACTCCGACGTGTTTACCCTTGTGTATGTAGCGGAGGGAACTATT
TACCAACAAGTTAACGTGGGTGTGCAATACGGCCATCATTCATCAGACCC
CCTCAATACCGTTCGAATGTTTCGTTCGCTCCCGAAACGCAGAGGCTAAT
GTTGAGGACGTAAAACTTTTTGAATTGAGTTTTTCGGTTCTCAGCGTTGT
TGTTGGAACTGTCAAATATGCCAGAACCTGCACACCTGCAAAGCTTGTTC
GCCACCTCTCGCTCGACCGGCCGTCTTTTCCTCAGGAAATGTATCTACCC
CCCAACCCTAGCTAATTTCCCTTCCTCCATCCTCGTGGTGACGCCGAACA
CACCTGTTTCAGGCTGGAGGAGTACGGACGGCTCGTTTTCGAGAGGACCT
TCGAGCTATCGGTGCGCAAGGGGGTGGCAGGCCGGTGTCGCTACTATTAG
AGCTAAGGCATCTCTGTTGATCGTTCCTCGACCGATGGAGCCCTAGGTGT
CACTTCACGCCGTGTTAGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11323:2312..3131-

>mRNA_S-dermatodea_contig11323.856.1 ID=mRNA_S-dermatodea_contig11323.856.1|Name=mRNA_S-dermatodea_contig11323.856.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig11323:2312..3131- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCGTCGAACAGGTCGAGAATACCCCGAACGATTCTTCTACACAGGC
ACCCGCACCAGGCGCTTCCAATGTGCAGCTCAAGGAGCGAAGGCGAGACG
GGTTACTCTACCCACGGCCGAGTGTGTGCGACGCGTGGGTTACGTGCCAT
GGGCTTCCCGGGCCGACGCCGCGGTACGAGCTGGACGACCTGCAGGCGGA
GATGACTGACCGCTGGTCTGGAGCCTTCTTACCGATGTCCAAGGCGTTGA
TCTCCGAACTGGCAGGATGTCCGTCGAACAGGTCGAGAATACCCCGAACG
ATTCTTCTACACAGGCACCCGCACCAGGCGCTTCCAATGTGCAGCTCAAG
GAGCGAAGGCGAGACGGGTTACTCTACCCACGGCCGAGTGTGTGCGACGC
GTGGGTTACGTGCCATGGGCTTCCCGGGCCGACGCCGCGGTACGAGCTGG
ACGACCTGCAGGCGGAGATGACTGACCGCTGGTCTGGAGCCTTCTTACCG
ATGTCCAAGGCGTTGATCTCCGAACTGGCAGGGCTGGAGGAGTACGGACG
GCTCGTTTTCGAGAGGACCTTCGAGCTATCGGTGCGCAAGGGGGTGGCAG
GCCGGTGTCGCTACTATTAGGCTGGAGGAGTACGGACGGCTCGTTTTCGA
GAGGACCTTCGAGCTATCGGTGCGCAAGGGGGTGGCAGGCCGGTGTCGCT
ACTATTAG
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