mRNA_S-dermatodea_contig11323.857.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11323.857.1
Unique NamemRNA_S-dermatodea_contig11323.857.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11323.857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11323contigS-dermatodea_contig11323:4846..5924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924197.6571498-CDS-S-dermatodea_contig11323:4845..49941622924197.6571498-CDS-S-dermatodea_contig11323:4845..4994Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11323 4846..4994 -
1694079085.6397474-CDS-S-dermatodea_contig11323:4845..49941694079085.6397474-CDS-S-dermatodea_contig11323:4845..4994Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11323 4846..4994 -
1622924197.666735-CDS-S-dermatodea_contig11323:5785..59241622924197.666735-CDS-S-dermatodea_contig11323:5785..5924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11323 5786..5924 -
1694079085.6485162-CDS-S-dermatodea_contig11323:5785..59241694079085.6485162-CDS-S-dermatodea_contig11323:5785..5924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11323 5786..5924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11323.857.1prot_S-dermatodea_contig11323.857.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11323 4846..5924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11323.857.1

>prot_S-dermatodea_contig11323.857.1 ID=prot_S-dermatodea_contig11323.857.1|Name=mRNA_S-dermatodea_contig11323.857.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
DVVREAEGVARDIYDILSRSKGSGGKNLSAIVKRIDTELAGAGEVEGLAT
GMLPQRSSLGSSSEAGFRSSNRCASSPPPRIARVFDREENWLRPGT
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mRNA from alignment at S-dermatodea_contig11323:4846..5924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11323.857.1 ID=mRNA_S-dermatodea_contig11323.857.1|Name=mRNA_S-dermatodea_contig11323.857.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1079bp|location=Sequence derived from alignment at S-dermatodea_contig11323:4846..5924- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGTCGTGCGGGAGGCCGAGGGCGTGGCGCGGGACATCTATGACATCCT
CTCTCGCAGCAAGGGCTCGGGAGGAAAGAATCTCTCCGCTATCGTGAAGC
GCATCGACACGGAGCTGGCCGGCGCTGGCGAAGTCGAAGGTTAGAAAAAG
AACACAACAAGTGCAGTTACTTACTTCTGTTATTCCGTCGAAGTTGCTTT
TTATGCGCACTACGTTGTGTTTACAGTCGCAGCAGTTTGTTGCACTGCTG
GTAAAGTTTTGGTTGAGGTGTGGATACGCAGCGGCGAGTTCTTTTGTATG
CGTATTGAGGATGAAGTACGCGCTCGCAGTGCGCTCTTGCCATGATCAGT
TTTCTCCGTGCTTACCTCACAATTTTGCGATGTCTATTGGGAGATACCCG
TGTGCAAAAAGTATGGACGACAAGCGTGACGTAGAGCCCTTGAACGGAGA
AGCAGTAACGCCGAGCTCGAACGTAACAGTGCGTATTGGTAAGCCACTTT
GTCCGTGGTCACCACGTTCGTGACAATGTAATAGTCGATTCTCAACTTCC
TTTTCCCGGACGTAACTCTATGGTCGATACTTCCTGCTCAACACCGTAAA
TAGCCCACCACCTTACACCGAGATACGTGAAGCTACGACAAAAACAAATA
TCAACGAACCACCGTCTGATATCTCCTTTCACATCAGACTAAGGTACTAT
GATCGTCTACTATCTGCAAGGTATTCGGCACACGCAGGAAACACCCGCCC
CCCTGCTTATGTAGATAATCTGCAGCACCCAGCGAACGTCATCGCGACTC
AATACGGGAAAATGTACCTTAGTGTCCTACACTATCGCGTCCGACAACAC
GACACCGACTATGTGCCTCGATTGAACCTCCTGTGCTTTTCTGCTTTCCC
GCCGTTTCTTAACGGTCGAATCCCTCGCAGGTCTGGCCACTGGAATGCTG
CCGCAGCGATCGTCTCTAGGCTCCAGCAGCGAGGCCGGCTTTCGCTCCAG
CAACCGCTGCGCCTCATCTCCCCCTCCGAGAATTGCGAGAGTCTTCGACC
GCGAGGAGAACTGGCTGCGACCTGGGACA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11323:4846..5924-

>mRNA_S-dermatodea_contig11323.857.1 ID=mRNA_S-dermatodea_contig11323.857.1|Name=mRNA_S-dermatodea_contig11323.857.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig11323:4846..5924- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGTCGTGCGGGAGGCCGAGGGCGTGGCGCGGGACATCTATGACATCCT
CTCTCGCAGCAAGGGCTCGGGAGGAAAGAATCTCTCCGCTATCGTGAAGC
GCATCGACACGGAGCTGGCCGGCGCTGGCGAAGTCGAAGGACGTCGTGCG
GGAGGCCGAGGGCGTGGCGCGGGACATCTATGACATCCTCTCTCGCAGCA
AGGGCTCGGGAGGAAAGAATCTCTCCGCTATCGTGAAGCGCATCGACACG
GAGCTGGCCGGCGCTGGCGAAGTCGAAGGTCTGGCCACTGGAATGCTGCC
GCAGCGATCGTCTCTAGGCTCCAGCAGCGAGGCCGGCTTTCGCTCCAGCA
ACCGCTGCGCCTCATCTCCCCCTCCGAGAATTGCGAGAGTCTTCGACCGC
GAGGAGAACTGGCTGCGACCTGGGACAGTCTGGCCACTGGAATGCTGCCG
CAGCGATCGTCTCTAGGCTCCAGCAGCGAGGCCGGCTTTCGCTCCAGCAA
CCGCTGCGCCTCATCTCCCCCTCCGAGAATTGCGAGAGTCTTCGACCGCG
AGGAGAACTGGCTGCGACCTGGGACA
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