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Homology
BLAST of mRNA_S-dermatodea_contig11319.852.1 vs. uniprot
Match: D8LCW6_ECTSI (MYND-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW6_ECTSI) HSP 1 Score: 284 bits (726), Expect = 4.110e-90 Identity = 150/225 (66.67%), Postives = 176/225 (78.22%), Query Frame = 2
Query: 2 GGVPGDFTAAAADFL--AGASGEARMGLELCGLDRYLASEAHETFKKALLECYDGGASLDVFFFGLLNERREFRDCYSFLEGMAQLGGAETFEEALRKLSEFGDG-------EIGRATARLCEHASFCFHLAGLPGVTSAMHIAKEGCEQNFSSSPFAKAMMYRTAYRNAAGDVGPPGRPELAEQYKELVLKPLHEAQEASGQPLAQLTPVSVEIKALLEEGILL 649
G PG F +AAA FL G +GE G++ CGL+ YL SEAH +FK+ LLEC DGG SLDVFFFGLLNERREFRDCYSFLEGMA+LGGAE FE+AL KL+ G+ GRATA+LCEHA CFHLAGLPG SAMHIAKE CE++F+SSPF +AMMYRTAYRN+ G+ P +PEL+E+Y ++V+KPL AQEA+GQ LAQLTPVSVEIKALLE+ ILL
Sbjct: 253 GSFPGKFDSAAAYFLDYEGKAGEGG-GVDSCGLEEYLNSEAHASFKRTLLECCDGGNSLDVFFFGLLNERREFRDCYSFLEGMAELGGAENFEDALEKLARQGEAGGRSDSNTNGRATAKLCEHACLCFHLAGLPGAASAMHIAKESCEEDFASSPFVRAMMYRTAYRNSKGEEVPSPKPELSERYTDMVMKPLQHAQEATGQHLAQLTPVSVEIKALLEQEILL 476
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Zinc finger, MYND-type |
| Ec32 ortholog | Ec-07_007180.1 |
| Exons | 5 |
| Model size | 814 |
| Cds size | 582 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11319.852.1 >prot_S-dermatodea_contig11319.852.1 ID=prot_S-dermatodea_contig11319.852.1|Name=mRNA_S-dermatodea_contig11319.852.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=194bp
MGLELCGLDRYLASEAHETFKKALLECYDGGASLDVFFFGLLNERREFRD CYSFLEGMAQLGGAETFEEALRKLSEFGDGEIGRATARLCEHASFCFHLA GLPGVTSAMHIAKEGCEQNFSSSPFAKAMMYRTAYRNAAGDVGPPGRPEL AEQYKELVLKPLHEAQEASGQPLAQLTPVSVEIKALLEEGILL* back to topmRNA from alignment at S-dermatodea_contig11319:1416..7506- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11319.852.1 ID=mRNA_S-dermatodea_contig11319.852.1|Name=mRNA_S-dermatodea_contig11319.852.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6091bp|location=Sequence derived from alignment at S-dermatodea_contig11319:1416..7506- (Saccorhiza dermatodea SderLu1190fm monoicous) GGGAGGCGTCCCTGGCGACTTCACAGCGGCAGCGGCAGACTTCCTGGCCG
GAGCGTCTGGGGAAGCGAGGATGGGGTTGGAGCTGTGCGGTCTGGACAGA
TACCTTGCATCGGAGGCGCATGGTACGCAAGACAGTGTCATGCTTGTGCC
CTGCTCCCGTTGTACGTTTGCAAACGAAACGTTATTTCCGCGTTTCAAGA
ACACCGTCTGACAGGGAGGGCCTTGCCCGTTTTTTTAGCACCCTCGAGGG
CGAATAACTTTCTTGCACACCAATTCCTTGTAGTGCCCTATAATACGGTT
CCTCGCCACGAACGGGATTGTAGGCCAATCGGTTTCAAGCTTTTACGTGT
GGCGATAGATCAATCTAGCTCTCAGTCTAATGATCAATGAAACAACCACT
TTCCCAATTTATCAAACAAAAATCAAACATCGCATCATCAATGAATCAAT
CACGAGCTCCGCCGGACCCTTCCCGTTTACCGTGGGAACGTCAATTCCCA
GCCTTACCCCTCTACCCCAAGCTGGTGGAACGGCGTCGCAGCTCAACCCG
TCAACGTCTGGCTCATAGATACCCACCCGCCTCAGTGAAAATGTCGTGTC
CCCCATGCCAACCACCTGCCGCGGAATAGAAACCTTCAAGAAGGCCCTGC
TGGAGTGCTACGACGGCGGAGCGTCCCTGGACGTGTTCTTTTTCGGTCTG
CTGAACGAACGAAGAGAATTCAGGTGTGAGCCGGGGGGTGTACAGGACCG
TGTTGTTGATGACGTGGTGGTGGTGATGATGGGGACAACGATTGTCTCAC
ATTGGCTGGGAGTCAAAGCTCAGAGGTGGTCCCGGGGTCGATGGACTGAG
AGGAAAATTAAACACGGAGACGCTGCCACGGTTAGTAGCTCTGACACTAA
ATACGAACTAGTGGGTAGCCACGGCTACGCCCGTGAGGTGTAAAATCAAG
TTATTTGGCGCTCAACACAAAAATCAAGTTGTTTGGCCTCAAAAATGGTG
TAGGAGTTTGTTGGACACCATTGCATAGGAAAACATGTTCAAAGCGGTAT
TAATTAGAATAGATTATACTGTAGCTGTTGAGAGTACCCAAATCAAAGAG
AGAAATTCCCACGAAATTTCCTTTCTAGCACAGCATTCCTCTTGTTCAAC
ACTCGAACATTTTTGACTACTACGTTGGAGAGCCTTCGCTATTGATTGCT
CATGACAGCATATTCGTGGACTAAACAAGAGCACAAGCAAGCCACAGAGG
GCGCGAGCTAAAAATCCCGTTTTGCCTGGGTCCATAGGCACCATCAACAT
TTTCGGCAGCCGCTAGCCCTTCGGGGTTAACATCCCAACGTGGATGAGCG
CAATTCGACGAATCTGCAAGAGAGCTGCGAAAGCGCTGAAATAATTGGAT
GTGCTCTGTTCTCAAAGGCACGAGCCGCAAAGATGTTTGACGATCCTTTC
AGACCAGAGAGAGGATCTGGATGAGGTCGATCCGTCAGAAATAAGTATTA
ATTAATTAATACAACAATGGACCTTTTTTCATAGCGAATATTGGTAACGA
TATGAGGCCGCTAAACTCCTGTACAGCACTAAATCCTGTACGATTTGAGA
ACCCACCACACTAAACTCCTACTTCGAAGTATACGATTGAGGCCGATGTT
TGCACTGCGATTTTGGTGCCAGACAGTTTTGACCCCCAAACATTTTCGCC
CTCCCCTCCCCTCGCCTCGCCTCTCCTCGCCGGTCGTCGCCGGTCGTCGA
CGTGTCGCCTCGCCGGTCGACCGCGGTCGACCTCGCCTTCACTCGCTCGC
GCGTTCGCTTGAGAACCCACGTCGTCCCCGCCACCGCGTCGCCAGAGGCA
GCAGCCAGCAGCGCCGGCACGGGCAGCAGCTACCAACGCAAACAAAGTAC
GTAGCATCTTCTCGAGACAGCACGAAGAACGCACCACTGCACACAAGCAG
CAGCCACACAAGCAGCAGCTAGCTTCCAGGCAGAACACCACGAAGCCAAG
CACACAGGCGCCCGCCGCCCGCGCCGGCCTGCAGCCAGCTACGCGCTGCC
TCTCCTCCTCATGTGCTAAGCAACCTCTCTCATCGAGCAACCTCTCCCTG
TCTGTTGGGAGTCGGGAGCAGCACCCATATCGATAGGTTATGGTATATTT
GTGTATATCTTGAAACCTCTTTTTACTTTGTTTTTTCGTGGGTTTCTGTC
CTACTTCTGTGATCACCTACTCCTTTGCCTCTCCCTCTGCTCGATGGAGA
CACCCCACAAAACGCACCACTGCACACACATAGCAGCACCAGCAGCTAGC
CCCTTCTTGCACGCTCGGCTTCCTCCGTGGGTGAACGCCTGCCGTGGGTT
AACGCCTGCCGTGGGTACTACCGCCACCTGCATATGGTCCTGCCAACGCA
CATCTCACGGGTGTAGCCGTGGCTATCTAGCTATCTAGTAGTAAAAATAA
ATGCAAGAAGGACAACCCCGTGAGCGTTGCGTGCATGGCGTGAACCGCGG
GTTTGTTATCACTCTTATGCCACAGAGAGAGAGAGAGAGAGAGAGCGGCA
ACAAGCTTGCGCGCGTCAGAGTAGAGCTCATATCTGCGAAGATAAAACGT
ACGATTGCATACGAAATACCTACATATTTTGGGCTCGCGGATTCAACCGT
TCAATTAGTTACAGATCGTGGTTTTCACTATCACCCGCCAAAATGCATAC
GCGGGGAAGTTCGGCAACTTCCGTGAATGGACCCCGGGGCTACGACTCGG
ACGGCTTATCTGTCTGTTTTATTTGACCCTTTCTGCCTTTCAACGCCCCT
TTTTAAGACCACCCAGCTTTTTACAACTCCGGTGGAAAACCGGTTTGGCT
GAGGACTTTGCCAAAAAGCTGAACGCTCCACGAAACCGTTTAAGATGTGC
GCACTGCCGAACGCGGGGGGTGGATAAGATGAGCCTCGAAACCGCGGACG
ATGCATGGAAAAGTAGACTTAAAAGTATGACAATATCATACGACAAATGG
GAGCAGTACCAGGCGAAGTAATTGTAACCGATATTTGACTGCCTGGATAT
TCCCCAGGGACTGCTATTCGTTCTTGGAGGGGATGGCGCAGCTGGGCGGA
GCTGAGACCTTTGAGGAGGCGTTGCGAAAGCTCTCAGAGTTCGGGGACGG
GGAGATCGGCCGCGCCACTGCGAGATTGTGCGAGCACGCCTCCTTTTGTT
TCCACCTCGCCGGGCTGCCGGGGGTGACCTCGGCGATGCACATAGCGAAG
GAGGGTTGCGAGCAGGTACGTTTTTCTTAGGGATGGATCGATCTGTCGAT
GTTTATAGATATATATATTGTAGGTTTTAGCCGGTCAATGGCCGGTCAAT
GCAAGTTGGTTAATTGATTAATTGTTTGATTGATTAGTTGATTATTTGGT
AGGTCGAGTGATGGCGTTTTCATGGTTACGTTCGGGAGGAATCCGCTACG
TCTAGAGAAAACCGGATCCCGTAAGAATACGCAAATCAAATGCTCGAAAA
CATCGGAGGGGATTCCTGCTGAGGGAAACAGGGCGTGATTCTTGAGAAAA
CGTTACCGTTCACGGTTACAGGAGGTTGATAAACAATATAACTTGTGGCG
CTTTGGCGTGTCAGATTTTCTGCATATGCCTTTTAGTGTCTGTGCTCGGT
TTCCTCTTCGTCCATCTGCATCGGCACCGTCCTCTTTATTACAACCGATT
GTTCCAGTGCGCAACAGTAGAGCGCTGTCAGATATCCTCAAGTACGCCTG
TCCCCAAGCGATATTTAGTTGGTGCACGTTCGGGTGTCGATTAGACCGCG
CGTAGCTCGCTCGCTCGCTCGCTCGCTCGGCCACTGCCTGGAGTCTCGGT
GGCCGCGTCTGCCGCCCAACCCTCGTATCGTAGCCTGCTGCGATTTAGAT
AAGTTTTTCATAACTGGTTGATTGATAGAACTGAGTTTGATTCTTCCTTT
CAAACCGATCGCTCTATCTACCCTAAGGCAAGTCGTGCGACAAACCCGGT
CGTTGTCAGGTGACAAAAATAGCCACCTCCACAACTTACCACTACTGTGT
CACCTTGAATCCCATGCAATATAAGTACCAACCTGCCCCGGAGGTAATGA
GTTTCTTACCCTTCCGTCTCCCCAATGATAACGAACCCCCACCCCCCACT
TTTGACCGCTTCCAGAATTTTTCTTCGAGCCCGTTCGCGAAGGCGATGAT
GTACCGGACCGCTTACCGGAACGCGGCGGGGGACGTGGGCCCCCCTGGCC
GCCCTGAGCTCGCGGAGCAATACAAGGAGCTGGTGTTGAAACCCCTGCAC
GAGGCGCAGGTGACTGCTACACTGCTACACGAATTCAACAGGATTAAAAC
CAGTTTCGGGTATCGTTGTTTTCAAACTATACACACTGTATTTGTTCCTC
AACGTCCTTCTCAAGCTGATTCGATTGGCGTATTAGTCCCTCGTGAGGCA
TCAGCCCGGCAGCGGAGAGGAGAGAACAGGAAGGAAGGCCTGTTTTTCCT
TGCAGAGTGCGATCGATACATGCGTCGCCCGGCTGTGGGCCACGTTTCGC
GCGTTTCTCTTGCGTTAAGGTTCATGTATGAAGGGCCGCTTGTGAAGCAC
ACTGTCGTGCGGGCGGCCCGCCAGGTTCTAACTCACTAGGGCTGGGCTTC
ATTTCCTCTCGTGGGCGCGGGGCACACCTCGTGGGTGTGAGCCGGACGCG
GAGTTTCAGCCGAGGTTGGCTCGCGGAATTGTGGGAGACAGGAGGGCGTC
TACAGGACCCTGAGGGTCTGTAACGTCCACCTGTTCTCACGGCGACGGGG
CCCAACAACCCGAGATATGGTCTACAAACCTGTCACTTACACTGTTTCCA
CTACATATTACCGTTCTTGTACGTGATCATTCACAAACGCTCTAAACGCC
CATGCGTCTCTTACGAGAGCGCACGGCCAGCGCGCACGTATTCGTCTGCC
GTGATTGACGAGAGAAACACCAGCTGAGCAATTGACTCGTCGTCGTGCTG
TTGAGCGAAGGTATAACTACAGCTTTGGCGAGAAGTGGCCCTGAAAAATG
CTGAAAGCGTTCCAAACTACAGAATTGTGGGATATTCTACCTTTATTTGG
ATGCCTCCGTTAATTGGACCCGGATTCCATGTCACCCATTTGTGCTCAAG
GTAGGGGCCCCGGCCGGTCGCTCGCTTTCAACGACATCGTCACGCTTGCC
TGTATTTCCCCCACATTTAAATCTTCCTTCTGCGTCGATTCGGTAGAAAG
TGGCTTGGTCGCTTACCTGTAGCCTTGTCTGGAGAAAAACACTGTACACG
CTTTATGGCGTGTGCCACGTTTTTTTTTTGTGTCACTGCCACCAATCTTG
CTTAGAGGTCAGGTTGAACTTGGTAAGTATTGTAATGCGGTAGGGTAACA
TATATTTTCAGCGTCGTGCGGCACGTACGATCCGTGCGTGGATAGTTACA
AGCAGGTCTTCTCGCCGGAAAATCTCGCATGATATCCCGAAGGACAAGCC
CGCCCGCCCGCCCGTCCAACCCTGCCCTGCTAGCCCCCTCGCTCGGCCGA
AAGGTATTCGGACGGCTACCAGATTCAGGCGCAGTGCGGCAGTAGAGTAT
CGCGCCCCGCCACACAGGCTTGCATTTTTGCACAACCGCTTCCCGCCCTT
TAAGATGTTGTGTGACAATATTTATGATATTGTGTGACAAGAGGTGCGGG
ACGACAGGGCACAGCTCCCCCCCTCGCACCCCAACTGTTCCGCGAATCAC
AGGTGCTGGTTCGGGCTGAAATCTTGCGTCGCCCGCTCCTCGTGGTACCC
CAACCGGCCCCTCCCGTTCGCGCTTTGTTTGTCGCTGTTTATCAGGAGGC
ATCAGGGCAGCCGCTGGCGCAGCTTACGCCGGTTTCTGTGGAGATCAAGG
CTCTCCTCGAGGAAGGGATTCTGCTTTAGCTATAATAATAATGCAATAGC
GCAATAGCTCGGGTCAAAATGAGTTATTATTACCATTATTTTTTGCGTGT
CTATGGCGGCTGGATGGACCGGATGGGGCGCTAAAATGTAATAGAGGGGC
CCGAGGCGCTCTCTCTGGTTCAATATCATCGGCATTTTTCT back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11319:1416..7506- >mRNA_S-dermatodea_contig11319.852.1 ID=mRNA_S-dermatodea_contig11319.852.1|Name=mRNA_S-dermatodea_contig11319.852.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at S-dermatodea_contig11319:1416..7506- (Saccorhiza dermatodea SderLu1190fm monoicous) ATGGGGTTGGAGCTGTGCGGTCTGGACAGATACCTTGCATCGGAGGCGCA TGATGGGGTTGGAGCTGTGCGGTCTGGACAGATACCTTGCATCGGAGGCG CATGAAACCTTCAAGAAGGCCCTGCTGGAGTGCTACGACGGCGGAGCGTC CCTGGACGTGTTCTTTTTCGGTCTGCTGAACGAACGAAGAGAATTCAGAA ACCTTCAAGAAGGCCCTGCTGGAGTGCTACGACGGCGGAGCGTCCCTGGA CGTGTTCTTTTTCGGTCTGCTGAACGAACGAAGAGAATTCAGGGACTGCT ATTCGTTCTTGGAGGGGATGGCGCAGCTGGGCGGAGCTGAGACCTTTGAG GAGGCGTTGCGAAAGCTCTCAGAGTTCGGGGACGGGGAGATCGGCCGCGC CACTGCGAGATTGTGCGAGCACGCCTCCTTTTGTTTCCACCTCGCCGGGC TGCCGGGGGTGACCTCGGCGATGCACATAGCGAAGGAGGGTTGCGAGCAG GGACTGCTATTCGTTCTTGGAGGGGATGGCGCAGCTGGGCGGAGCTGAGA CCTTTGAGGAGGCGTTGCGAAAGCTCTCAGAGTTCGGGGACGGGGAGATC GGCCGCGCCACTGCGAGATTGTGCGAGCACGCCTCCTTTTGTTTCCACCT CGCCGGGCTGCCGGGGGTGACCTCGGCGATGCACATAGCGAAGGAGGGTT GCGAGCAGAATTTTTCTTCGAGCCCGTTCGCGAAGGCGATGATGTACCGG ACCGCTTACCGGAACGCGGCGGGGGACGTGGGCCCCCCTGGCCGCCCTGA GCTCGCGGAGCAATACAAGGAGCTGGTGTTGAAACCCCTGCACGAGGCGC AGAATTTTTCTTCGAGCCCGTTCGCGAAGGCGATGATGTACCGGACCGCT TACCGGAACGCGGCGGGGGACGTGGGCCCCCCTGGCCGCCCTGAGCTCGC GGAGCAATACAAGGAGCTGGTGTTGAAACCCCTGCACGAGGCGCAGGAGG CATCAGGGCAGCCGCTGGCGCAGCTTACGCCGGTTTCTGTGGAGATCAAG GCTCTCCTCGAGGAAGGGATTCTGCTTTAGGAGGCATCAGGGCAGCCGCT GGCGCAGCTTACGCCGGTTTCTGTGGAGATCAAGGCTCTCCTCGAGGAAG GGATTCTGCTTTAG back to top
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