mRNA_S-dermatodea_contig11289.821.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11289.821.1
Unique NamemRNA_S-dermatodea_contig11289.821.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: D7G656_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G656_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 4.580e-89
Identity = 214/398 (53.77%), Postives = 234/398 (58.79%), Query Frame = 1
Query:    1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGNGSRRKSRDRRRMEDVFRGPTAVAPSLQPYVAGAGAVETGLYRFLSPIAIQIVERPPLA-GQGDTT-------------AGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAATGVQPPNWYRAGRGVDDLLSEAEGLDWLADSGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADFPSDLG-QPSLKKVRAGPPVSSLAAANNTALTSSSSLPGATAAAVTXXXXXXSTPGVNLPGTV---GQPPASSPLPLARPPAPP----PGTGGALASAALTPSGLQGSDTEEGHLSGLSDLESLIED 1128
            +NTGRWT+DEHRLFL GL++HGKGWKKIASLIKTRTVVQIRTHAQKYFQK+AKAKQNG+HG+V +D+KG+GSRRKSR RRRMED+ RG TAVAPSLQPYVAGAGAVETGLYRFLSPI IQ +ERPP A GQG T               G        GH  +                                V PPNWYRAGRGVDDLL+EAEGLDWLADSGGA              XXXXXXXXX                       S+L  QP LKKVR+               T  SS P ATA  + XXXXXX                 P+S  LP  RP A P    P T G +A   LTPSGLQGSD EEGHLSGLSDLESL+ED
Sbjct:    4 KNTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSKGHGSRRKSRGRRRMEDLLRGSTAVAPSLQPYVAGAGAVETGLYRFLSPITIQDLERPPAAAGQGGTAXXXXXXXXXXXXXGGASLQSQLAGHATSSA------------XXXXXXXXXXXXXXXXXXVLPPNWYRAGRGVDDLLTEAEGLDWLADSGGAVAVTSVSAVNPAAAXXXXXXXXXVAGAHAGVARVASS---------SELSSQPLLKKVRS--------------TTVDSSAPLATATTMNXXXXXXXXXXXXXXXXXXXXAMTPSSWSLPPPRPVACPXXXAPPTAG-VAVDELTPSGLQGSDAEEGHLSGLSDLESLMED 365          
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A6H5L4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H1_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 7.330e-75
Identity = 139/213 (65.26%), Postives = 154/213 (72.30%), Query Frame = 1
Query:    1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGNGSRRKSRDRRRMEDVFRGPTAVAPSLQPYVAGAGAVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAATGVQPPNWYRAGRGVDDLLSEAEGLDWLADSGGA 639
            +NTGRWT+DEHRLFL GL++HGKGWKKIASLIKTRTVVQIRTHAQKYFQK+AKAKQNG+HG+V +D+KG+GSRRKSR RRRMED+ RG TAVAPSLQPYVAGAGAVETGLYRF             LAG   ++AG                              PT  +AG A A A  V PPNWYRAGRGVDDLL+EAEGLDWLADSGGA
Sbjct:  572 ENTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSKGHGSRRKSRGRRRMEDLLRGSTAVAPSLQPYVAGAGAVETGLYRF-------------LAGHASSSAGAS----------------------------PTTATAGAATAVAAAVLPPNWYRAGRGVDDLLTEAEGLDWLADSGGA 743          
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A6U4FI15_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FI15_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.060e-41
Identity = 109/219 (49.77%), Postives = 126/219 (57.53%), Query Frame = 1
Query:    1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNG-DHGEVPIDAKGNGSRRKSRDRRRMEDVFRGPTAVAPSLQPYVAGAG---AVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAAT--GVQP-PNWYRAGRGVDDLLSEAEGLDWLADSGG 636
            +NTGRW+++EHRLFL GL+MHGKGWKKIA LIKTRTVVQIRTHAQKYFQK+AKAKQ G + G V +D +G G +   R    +E      TAVAPSLQPY+   G   +VE+GLY+FLSP  I            D  A   AA  A                             GV  A A   G  P P+WY  G  VD LL+EAEGLDWLADSGG
Sbjct:   29 ENTGRWSYEEHRLFLKGLEMHGKGWKKIAELIKTRTVVQIRTHAQKYFQKLAKAKQGGAEPGAVLLD-RGLGRKNGKRKSGSLEG-----TAVAPSLQPYMTLPGVNGSVESGLYKFLSPNVITSFV------DDDKAAKAQAASRASXX--------------XXXXXXAQRAKQGVTPAEAVRMGYAPTPDWYAKGNNVDVLLNEAEGLDWLADSGG 221          
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A7S2UGN8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGN8_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.050e-33
Identity = 102/275 (37.09%), Postives = 135/275 (49.09%), Query Frame = 1
Query:    1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN---------------------------------------GSRRKSRDRRRMEDVFRGPTA------VAPSLQPYVAGAG---------AVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHP-----GAGC*P-----PLPPPRPHPRVLRPTFCSAGVALAAATGVQPPNWYRAGRGVDDLLSEAEGLDWLADSG 633
            +NTGRWT +EHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK++KA+QNG+ G+V ++ +G                                         S ++   ++ M    +G ++      VAP+L PYV   G         A+E  L+R+L+P         PL GQ         A  AG +P     GA         P      H  +L P++ S G   +A      P W+  G  VDDLL+EA+ LDWLAD+G
Sbjct:   72 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLSKARQNGEEGDVSMEGRGGIDMLTPGIIVSSALPPSSXXXXXXXXXXXXXXXAISSVVASAQREGKKQSMAASSKGSSSIPTLPVVAPALAPYVIANGGPQGTISASALENSLFRYLTPAGSAPSTADPLFGQHPAV--NAVARQAGANPIVLPDGAALADSAELSPTGVADQHNLLLFPSWVSDGKESSA------PTWFSKGGDVDDLLTEADALDWLADTG 338          
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A6S8P3T4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8P3T4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.410e-31
Identity = 104/269 (38.66%), Postives = 132/269 (49.07%), Query Frame = 1
Query:    1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN---------------------------GSRRK-------SRDRRRMEDVFRGPT----AVAPSLQPYV----AG--------AGAVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRV------LRPTFCSAGVALAAA--TGVQPPNWYRAGRGVDDLLSEAEGLDWLADSG 633
            +NTGRWT +EHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK+AKA+QNG+ GEV ++ +G                            G++RK       S  ++  +    G      AVAP+L  +V    AG        + A+E  L+RFL+P  +   + P L            A  AG +P       LP   P          + PT C A + +  +   G  PP WY  G  VD LL  A  LDWLAD G
Sbjct:   43 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGEVIMEGRGGLSTTAGHDLVGXXXXXXXXXXXXXPLAGTKRKAIQSIVHSAQKQGKKMAVEGKPLPLPAVAPALANFVVRDKAGFAANGTLTSSALEDSLFRFLTPAPVSTTDSPVL---------NDVARQAGANPIT-----LPSENPSSAPTNGDGEVSPT-CVADINIYPSWTDGKDPPAWYAKGADVDALLDVAGTLDWLADPG 296          
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: W7TWM0_9STRA (SANT/Myb domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWM0_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.590e-31
Identity = 101/276 (36.59%), Postives = 132/276 (47.83%), Query Frame = 1
Query:    1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN---GSRRKSRDRRR-------MEDVFRGPTAVAPSLQPYVAGA----------------GAVETGLYRFLSPIAIQIVER----------PP------------LAGQGDTTAGTGAAGA-----------AGGHPGAGC*PPLPPPRPHPRVLRPTF-----CSAGVALAAATGVQPPNWYRAGRGVDDLLSEAEGLDWLADSGG 636
            +NTGRWT +EH LFL GL+MHGKGWKKIA LIKTRTVVQIRTHAQKYFQK+AKAK+NG HG++ +  +G    G R K   +RR       +        A++P+LQ Y+ G+                 A+E GLYRFLSP+ +               PP            +   G+TT   G++G            A    G           P PR+ R T      CS             P W+  G  +++LL++A  +DW  DSGG
Sbjct:   98 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDM-LGMEGTRFGGKRVKFTGKRRGLVYGSYLVGAEATSAAISPALQSYMPGSWAGREEGEALSDKEEDAAIEKGLYRFLSPVVLDAAASNLDATAPEVLPPSTPGTGVHANGVVGADGETTEEDGSSGGDNVDVSETTDDADSSSG----------EPLPRLARVTNDMYERCSV------------PTWFMKGGDIEELLADAAAIDWREDSGG 350          
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: B7GAW9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAW9_PHATC)

HSP 1 Score: 130 bits (327), Expect = 5.240e-30
Identity = 100/287 (34.84%), Postives = 132/287 (45.99%), Query Frame = 1
Query:    1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN---------------------GSRRKS---------RDRRRMEDVFRGPT----------AVAPSLQPYVA-----------------------GAGAVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAATGV-------------QPPNWYRAGRGVDDLLSEAEGLDWLADSG 633
            +NTGRWT +EHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK+AKA+QNG+ G+V ++ +G                      G++RK+         R  +++      PT           VAP+L  Y                            A+E  L+RFL+P+    V  PPL            A  AG +       P+  P  +P  + PT    G    + TGV             +PP+WY  G  +D LL   + LDWL D+G
Sbjct:  115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGRGGVASITSVSTTAVLPKRRRQTTGTKRKAIQSVVASAQRQGKKLAAAKTNPTRHHPLPPPLPTVAPALAHYTLPSTAMMAKNGTAVKEEYVSPTNLSGPALEDSLFRFLTPLP---VSEPPL---------NEVARQAGAN-------PISLPTDNPSSI-PTV---GAGEISPTGVSDLMLYPSWTDSKEPPSWYSKGADIDALLDMGDSLDWLDDTG 378          
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: B7GAX0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAX0_PHATC)

HSP 1 Score: 130 bits (328), Expect = 1.870e-29
Identity = 100/287 (34.84%), Postives = 132/287 (45.99%), Query Frame = 1
Query:    1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN---------------------GSRRKS---------RDRRRMEDVFRGPT----------AVAPSLQPYVA-----------------------GAGAVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAATGV-------------QPPNWYRAGRGVDDLLSEAEGLDWLADSG 633
            +NTGRWT +EHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK+AKA+QNG+ G+V ++ +G                      G++RK+         R  +++      PT           VAP+L  Y                            A+E  L+RFL+P+    V  PPL            A  AG +       P+  P  +P  + PT    G    + TGV             +PP+WY  G  +D LL   + LDWL D+G
Sbjct:  115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGRGGVASITSVSTTAVLPKRRRQTTGTKRKAIQSVVASAQRQGKKLAAAKTNPTRHHPLPPPLPTVAPALAHYTLPSTAMMAKNGTAVKEEFVSPTNLSGPALEDSLFRFLTPVP---VSEPPL---------NEVARQAGAN-------PISLPTDNPSSI-PTV---GAGEISPTGVSDLMLYPSWTDSKEPPSWYSKGADIDALLDMGDSLDWLDDTG 378          
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A7S1V9A3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V9A3_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.680e-29
Identity = 102/275 (37.09%), Postives = 128/275 (46.55%), Query Frame = 1
Query:    1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKG---------------NGSRRKSRD---RRRMEDVFRGPTAVAPSLQPYVAGA-----------------------------------------GAVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRV---LRPTFCSAGVALAAA--TGVQPPNWYRAGRGVDDLLSEAEGLDWLADSG 633
            +NTGRWT DEHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK+AKA+QNG+ G+V +DA+G               +G RR+      R+ +  V    T  A       AG+                                          A+E  L+RFL+P         P+A   D       A  AG +P      P   P   P +   + PT C   VA+  +       P+WY  G  VD LL  A+GLDWL D+G
Sbjct:  165 ENTGRWTADEHRLFLQGLEEHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVSMDARGGTASVALGLPVSTSASGKRRRQTTGTKRKAISSVVASVTREAKRXAQQPAGSILPPQQLXXXXXXXXXXXXXXXXXXXXXXXXXSSAHSAITGPALEDSLFRFLTPA--------PVA-PNDQVQVNDVARQAGANPITV---PTDNPSAAPSISGEVSPT-CVTDVAIFPSWTDAKDMPSWYAKGADVDVLLDAADGLDWLTDTG 426          
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A1Z5KDK7_FISSO (Protein MYSM1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDK7_FISSO)

HSP 1 Score: 126 bits (317), Expect = 9.000e-29
Identity = 100/282 (35.46%), Postives = 134/282 (47.52%), Query Frame = 1
Query:    1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN-----------------------GSRRK---------SRDRRRMEDVFRGPTA-------VAPSLQPYV-----AGAG--------------AVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAATGVQ-------------PPNWYRAGRGVDDLLSEAEGLDWLADSG 633
            +NTGRWT +EHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK+AKA+QNG+ G++ ++ +G                        G++RK          R  ++      G  +       +AP+L  +V     + AG              A+E  L+RFL+P+ I       +A Q         AGA           P+  P  + + L      A V   + TGVQ             PP+WY  G  VD LL  ++ LDWLAD+G
Sbjct:   96 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEGRGGNASITSNTTATAAMTNKRRRHITGTKRKVIQSVVASAQRQAKKANLTEIGNPSKNVAVPGIAPALAYFVTPTPSSSAGPDTDLMTDDHISGPALEDSLFRFLTPVPIATDHVNDVARQ---------AGAN----------PITLPSTNGQAL------ASVPGRSPTGVQDLSIYPSWTDAKDPPSWYAKGADVDALLDVSDTLDWLADTG 352          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G656_ECTSI4.580e-8953.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H1_9PHAE7.330e-7565.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U4FI15_9STRA2.060e-4149.77Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2UGN8_9STRA1.050e-3337.09Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6S8P3T4_9STRA1.410e-3138.66Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
W7TWM0_9STRA3.590e-3136.59SANT/Myb domain protein n=2 Tax=Monodopsidaceae Ta... [more]
B7GAW9_PHATC5.240e-3034.84Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
B7GAX0_PHATC1.870e-2934.84Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1V9A3_9STRA4.680e-2937.09Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Z5KDK7_FISSO9.000e-2935.46Protein MYSM1 n=2 Tax=Fistulifera solaris TaxID=15... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11289contigS-dermatodea_contig11289:1055..7036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue1.2e-46
Seed eggNOG ortholog2880.D7G656
KEGG koko:K03797,ko:K09391
EggNOG free text desc.ubiquitin modification-dependent histone binding
EggNOG OGsKOG0724@1,KOG0724@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-11_005250.1
EC3.4.21.102
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03000
Hectar predicted targeting categorymitochondrion
Exons7
Model size1128
Cds size399
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.8645742-UTR-S-dermatodea_contig11289:1054..11111622924194.8645742-UTR-S-dermatodea_contig11289:1054..1111Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11289 1055..1111 +
1694079083.6756313-UTR-S-dermatodea_contig11289:1054..11111694079083.6756313-UTR-S-dermatodea_contig11289:1054..1111Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11289 1055..1111 +
1622924194.932139-UTR-S-dermatodea_contig11289:5701..60151622924194.932139-UTR-S-dermatodea_contig11289:5701..6015Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11289 5702..6015 +
1694079083.7497394-UTR-S-dermatodea_contig11289:5701..60151694079083.7497394-UTR-S-dermatodea_contig11289:5701..6015Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11289 5702..6015 +
1622924194.9471726-UTR-S-dermatodea_contig11289:6219..64931622924194.9471726-UTR-S-dermatodea_contig11289:6219..6493Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11289 6220..6493 +
1694079083.7623703-UTR-S-dermatodea_contig11289:6219..64931694079083.7623703-UTR-S-dermatodea_contig11289:6219..6493Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11289 6220..6493 +
1622924194.9608412-UTR-S-dermatodea_contig11289:6952..70361622924194.9608412-UTR-S-dermatodea_contig11289:6952..7036Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11289 6953..7036 +
1694079083.771744-UTR-S-dermatodea_contig11289:6952..70361694079083.771744-UTR-S-dermatodea_contig11289:6952..7036Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11289 6953..7036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.8775756-CDS-S-dermatodea_contig11289:1111..12871622924194.8775756-CDS-S-dermatodea_contig11289:1111..1287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11289 1112..1287 +
1694079083.695429-CDS-S-dermatodea_contig11289:1111..12871694079083.695429-CDS-S-dermatodea_contig11289:1111..1287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11289 1112..1287 +
1622924194.887166-CDS-S-dermatodea_contig11289:3364..34911622924194.887166-CDS-S-dermatodea_contig11289:3364..3491Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11289 3365..3491 +
1694079083.7099307-CDS-S-dermatodea_contig11289:3364..34911694079083.7099307-CDS-S-dermatodea_contig11289:3364..3491Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11289 3365..3491 +
1622924194.8956113-CDS-S-dermatodea_contig11289:4925..50051622924194.8956113-CDS-S-dermatodea_contig11289:4925..5005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11289 4926..5005 +
1694079083.718305-CDS-S-dermatodea_contig11289:4925..50051694079083.718305-CDS-S-dermatodea_contig11289:4925..5005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11289 4926..5005 +
1622924194.9033418-CDS-S-dermatodea_contig11289:5094..51081622924194.9033418-CDS-S-dermatodea_contig11289:5094..5108Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11289 5095..5108 +
1694079083.7298167-CDS-S-dermatodea_contig11289:5094..51081694079083.7298167-CDS-S-dermatodea_contig11289:5094..5108Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11289 5095..5108 +
1622924194.9136755-CDS-S-dermatodea_contig11289:5699..57011622924194.9136755-CDS-S-dermatodea_contig11289:5699..5701Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11289 5700..5701 +
1694079083.7378728-CDS-S-dermatodea_contig11289:5699..57011694079083.7378728-CDS-S-dermatodea_contig11289:5699..5701Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11289 5700..5701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11289.821.1prot_S-dermatodea_contig11289.821.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11289 1112..5701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11289.821.1

>prot_S-dermatodea_contig11289.821.1 ID=prot_S-dermatodea_contig11289.821.1|Name=mRNA_S-dermatodea_contig11289.821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKG
NGSRRKSRDRRRMEDVFRGPTAVAPSLQPYVAGAGAVETGLYRFLSPIAI
QIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*
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mRNA from alignment at S-dermatodea_contig11289:1055..7036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11289.821.1 ID=mRNA_S-dermatodea_contig11289.821.1|Name=mRNA_S-dermatodea_contig11289.821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5982bp|location=Sequence derived from alignment at S-dermatodea_contig11289:1055..7036+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGAACACGGGGCGGTGGACGCACGACGAACACCGGCTGTTTCTCGTGGG GCTGGACATGCACGGCAAGGGCTGGAAGAAAATCGCGTCGCTGATCAAGA CGCGCACCGTTGTGCAGATCCGCACGCACGCCCAGAAGTACTTCCAGAAG GTCGCGAAGGCGAAGCAGAACGGCGACCACGGCGAGGTGCCCATCGACGC GAAGGGGAACGGTTCGCGACGGAAGAGCCGAGAGTGAGAGGGGGTCGGGC ACATTGGAGTGGAGTATATACACGAGACGCACTTGAATACGGGTATCATA GCGGTAGTATTTGAGAGGGAGTTCAATACAATACGCGCTGTATTTGGATA TGACGAATATTGCAATAATTTAGGGGACACACGTGATTGTAGGTCGTTTC GCGCTCGCTGCTTGTTTTTATTTAACCCACTCACTGCCGTTTATAGATGA GCGCCGTCGCTGCTCTCAGAGGAACTGTTAAGTGACAGGCTGGCCGAAGC CGCACGCACGCCGCATGTGGTGAATCTCTCGGCGCACGCTGCTACGATAC TGTTTGTATGATACCGGTGCACTTTATGGGTACACGCAGCAGCAGCAGTG TGCGGTCGGTCGGAAACAAGCGTCGTCTTGTCACTAATGATAGTACGGAG GTTCTGTACAGAGTAATCAAGACCAAATCTCATCCTTATTAATTATTACA AGAGTCAACAATTTTTTCACTACAATAAAGCGTAGGCATACTAATTTACA CACGATTTCACATTTTCAAAGTGAAGCCGGATTGGGTATACTAAATCCGA TACGATTTACATTTTCAAATGCATATGGTAGCGATACGCCTGCTGTGGGT CGCCACACCGTATCCCAAACCTAACCCACACATCGCGATCGTCCTGCCAA CGCACACCTCACGGGCGACAGCCGTGGCTTGCAACTAGTTACCATAAATA CGCAACTGTTCCACCCATTCCATGAATAATACACCAAAACAACACAACAA AACCATGAACCAAAAAACAACACGAGGCCTGGCCTACCCGACAAAAAAAA CACCGACCGTGAATAAATACCCAATCGTTCCGGCCTACTTTGTTTTGCAA AGTTAACCCTTTTGGGACTAAGGCTGCTTTTGGGCAACTGTTTGCTATTA TTATACACGCTTTTGTTTTGGGACTAAGGCTGTTTTCGGGTAACTGTTTA CTGTTATGGTTGCCAACAGTTTACCCGAAAACAAGCTTCGTCCTCAGGCT TAGTCCCACAAGGGTCAATCATAACAGCAAAAAGTTACCCGACAACAGCC TTGGTCCCAAAAGGGTTAAGATTTGCGACAAAGTTGGACCTGTTTACTAT CATACGGTCCTCCGTAATATGTATATTAAGATTATCTCCCCCGCTTATCG CACCTTCGCAAAAAAAAAAAAAACGCAACAGTGCGATTATTTTAGCGCTC GAATGCAGATCCATTCGAGTGCCTTCCGCAATGTAAATATACTACTGCTG TATGTGTAGCTCTAGAAGTATATCGTTTCGCCCTGCTTGTTCAACCCTGC CTAGATGGCGTTGTCGCTGCTGAGCGAATCCAGGCTGTTTGGTGTGTACC GATAGAGACCCTATTAGCGTGCTTTGTTGCTGCACGGGACGCGCACGGTG TTTTATCCACTGGGTGGCACCCCGCGCTCCTGTTTTCCGAGGACTATACC CTTATACTGATGCCCCTGCCGCGTTGCAACTGGCCGTAGACCAATAAGGA CCTGTTCAGAGACGAGGAAGCATTGTTTGAGTCCGAGTTCTCTTCTAGCG TTTTCTCTATATTTGGGGTACTATTTCTTATCTCTTGCTCCATAGTAAGT TACAAGCGACGGCATGGTGTATACTAGAAGTAGAGTTCTGATTGAGTTAT TTTTCTCCTTAACTCTTTGCTGTAGTATCTGACCACAAGTCGGGTCGGAT TAAGCCGATCGGCTATACGTGTGCAAATAAAAAATCAATCAATCAATCAA TCAATATGTGTAAATCCAAAGTTTGGGGGGGGTAGGAACATGGGCTCTTT CTGCCGTGCAGGAGTTATAGATAGAAGGCGTTTCTTCATTTTGCCTGCGC TCGCACCTGATTGGCCAGCCCATCTCACGTTATCCCGTTCCGAGTTCAAC AGGTTCGACCATTATGATCCGGATTGCAACGTTAGCCCTTTTGGTACTAT TAATAGTATTATATTATTATATTAACAGTATTATATTAGTATTTACCGCC CCGCTTCCTCGTGTGACGCCCCAACAACAAAACATTGTACCCCCCCCCCC CTCCCGCCAGCCGGCGGCGAATGGAAGACGTGTTCAGGGGACCCACCGCC GTCGCGCCCTCCCTGCAGCCATACGTGGCCGGCGCGGGAGCCGTAGAGAC CGGCCTCTACCGTTTCTTGTCCCCGATTGCCATCCAGGTGTGTTATCGCG ACCGTGGGTCTGGGTGGGCGCTGACGCAACCCTACCCCTGTCCCTATCCT TATCCCTATCCCTATCCCTATCCCTAACCCTAACCCTATCCCTAGCCCTA TCCCTAACCCTAACCCTATCCCTATCCTAACCCTAACCCTAACTCTAACC CTAACCATATCTCCTTCCTATCAATACCCCCAAAGCCAACTCCTGGTCTT CAATCCGAGACCTGTAAAATCGAGCCCGAACGCGCGGCTGCGCCCTGCGG CGCCGCACCGCACGGTACCGCACTTCACCGCACCGCACTTCACCGCACCG CACCGCACTGCGCCTGAATCTGTTTTGCTTCGTTTTGTTTTGATTTGTTT TGTTTTTCTTTGCCGTCCAAGCTTTGGGTCAGGGTCAGGGTCAGGGTCTG GATCAGGATCAGGATCAGTCTCGATAGTTTTTTCTCTTCTTTTGTTTCTC TCGCGGGACCAGCACATGTAGTTTGGCTTTCTCGTGTGTGTGTGTGTGTG TGTGTGTGTGTGGGTGGGTGTGTGTGTGGGTGGGTGGGTGGGTATGGGTG CTCTTCTTGTGCACGCGAAGAAGCACACGGGCCTTGCCCGTTCGTTGGAT TTTGTTTTCTTTCTTTTTTTTCTGACCGACCCCCACCCAGCAGGGCACTT GTTTTTTTTTATCACGCAGACACGATTTGTTTTTGATGGTATACGAAGTA TTATCACACATACATACATACATACATACATATATTAAGCTATTTTATGT TGTTGATTGATTCAGATGTTTATCACATTACAGCAGCATCACATTTGCAA TCGATCGGGTCTCCAAATGGATGGCGGACCCCCCGAAGACAGTAAATATT TTATGAACACAGAACTAGCATTGGGGTCCAACCAATATTTTTGGTAGAGG AAAAAGAAGGCCCAATCTAACTCATCAGTGGAAGCCTACATAATATACGA TTCTATCGATGCTATCGTGTCACATTCAAATCAAGAGGGAACTCTAGGAA TGGGTTGATTTGTACTTGTCATGTTATTGTCAACTTTTCTTCGAGCCTGT ACTACTCACCCTTATTTGCGCATCCGTTTGTTTTCGAACCTATTCTGCCC GTCCTTTCTCCTAGCCCAGACACGCTCGTGTTCAACAACAACAGTGGTGG AGGACCCCCCCCCCCCCTCTCGTTGTCAGACGAGAAAACCGATAAATCGG AGCAAAACCAACGGAATTACAGTATCTATAATAGCGCTCTTAATTACATC AAACATCAGTATACTGTATCACACATAAAATTAGAAAGAACAAACACAAC GCTCGGAAACAGAGAGGACACACATAACGTACACAACCTCGGCACTTCGG GGGTCTGCTTGAAACAAAGCCCCGTCTCCTACGGCAAGAGCTCATCACAC TCTCCACGTCCTGTTGTGCAGATTGTCGAACGACCTCCACTGGCAGGACA GGGGGATACGACCGCCGGCACGGGCGCGGCGGGAGCAGCAGGAGGACATC CGTCGCAGCCGTGAGTGGCTAACCCGTGTAGCGATGCCTGCTGCTATGTT CGCTTTTCTCCTCAAGCTGTGAAGTGGCTAACTCGTGTAGCGGTGCCGGC TGCTGTTCGCTTTGCTCCTCAAGCGGTGAAGTGCGCGTCATGCCTCCTTC TACAAGCAGGCTAATACAAGTATTTTAGTATCATGCGATACAATACATCA CACGAGTTGCGCTATTTGGTTTCTCTGGCGCACCGTGTATTGGTTGTGGC TGAATATATTTTGGGGTCTTGGTTGGCGGTTGCTTTGACTGGTTCGCAAG CGTACCGCGCGGTGTGACGTTTCACGCAAAGACATGGACGGTGTGAGTAT GTGTGTGTGTGTGTTTCTTTTTTTTCTTCTTTTTTTTCTTGTTATTTATT TTTTGCAATATCGTCCTTGTCGGCCTGTCGTCGTGCTGAGGAGGTCCTTC GGGCAAGGTATCCCCACCTGCCACAGGAACTCGGAGAATGCGGTCGTTGT GCGCCCTAGGTAGGCACGGTTGGGCAGAAGTACCTCCCGAGGGTATACGG TGCAAGGCCGCCAAGTCCTTCCACAATCGGCGTGGCTTCTACCGCGTTTG TTGTTACCACAAGTTAGAGGCGAGAGATAACGTCGCGGATCAAAACAGCC AAAAAGTCTAAGTTGACGTTTTTGTGACATGTTACAAAATGACAGGACCC CCCCTCCCCCCCCCCCGCCCACACCCCCGTGTGCTCCGGCCCACGTTTTG CAGCGCGGGCGTCGCACTGGCAGCTGCTACAGGAGTCCAACCACCGAACT GGTACCGAGCCGGCCGAGGTGTGGACGACTTGCTATCCGAGGCGGAAGGT CTCGACTGGCTGGCCGACAGCGGTGGAGCTGGAGGCCCCGCGGCAGCAGC AGCGGCAGCAGAAGCGGCAGCAGCAGCGGCAGCATCTGCCGCAGCTGCTG CTCCTCCGCCGCAACCGCCTGCATCTCCGGCTGCTGCTGCTGCTGCCGCG GCGGCGGCGGAGTCGGCGGCGGCAGCGGAGGCTGCTTCGGCGAGGCCAAG CTCAGACGTCACGGTGGCGGCGACGGCAGGTAGGGTAGGGTTGGCAGCAC CTTCCCCCGGCGTCGGCGCCGCGCCTCAGGTTGGCCCGATGGGTGCAGGG TCGACCGTGATAGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCG GCAGCAGCAATCGAGTTTTCCATCGGATTTGGGCCAGCCGTCTCTCAAGA AGGTCCGTGCTGGTCCGCCGGTGTCGTCGCTGGCGGCGGCGAACAACACC GCGTTGACTTCGTCAAGTTCGCTGCCAGGGGCTACGGCGGCAGCAGTGAC ATCCGCGACCGCTGCGGCTTCGACACCCGGGGTGAACTTACCCGGGACCG TTGGACAGCCGCCGGCTTCGTCGCCATTACCTCTGGCGCGCCCGCCAGCA CCCCCACCGGGGACCGGAGGGGCGCTTGCCTCGGCCGCCGTGCTATCGTT GGCGCTTCCAGTCGAGCCGCAACGACCAATCGCGCCACCAGCTGCTGCGC CCGTCGGATTATACACCGCTGCTGGGACGGCGCGCTCCGCTACGGTGCCA ATGACTGCCGTGAGCGGCCTACCAAACGGAGTGGCTGGCTTGAAGCTGTC AACCACCGCGCAGCAACGAATAGGTGGCTTAGCAGGCGGCGGTGGTGGTG GCGACGGCAGCGGGACGGCGGGAGCGAATCAGACGCACGAGACGAGAGCT GCCCAACCGGGGGCGGTGGACGATAACGTCGAGATGACCAACTGGGCCGC CCCTTCTCCAGGCGCGGCGGTCGTGGCCGCTGACGGGGGAGGTCCCGGTC CTGCGTTGGCGGGCGGTGCGGCTGCAGCAGGCGTTGGCAGATCCGCGGAA GACGCGGCGCCGACGGGCATCGGCAGCGACGCCGGGGTTGTGGCGGAGTT GACCCCGTCAGGGCTGCAGGGGTCGGACACGGAGGAGGGGCACCTGTCGG GTTTGTCAGACCTGGAAAGCCTCATCGAGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11289:1055..7036+

>mRNA_S-dermatodea_contig11289.821.1 ID=mRNA_S-dermatodea_contig11289.821.1|Name=mRNA_S-dermatodea_contig11289.821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig11289:1055..7036+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACGGCAAGGGCTGGAAGAAAATCGCGTCGCTGATCAAGACGCGCAC
CGTTGTGCAGATCCGCACGCACGCCCAGAAGTACTTCCAGAAGGTCGCGA
AGGCGAAGCAGAACGGCGACCACGGCGAGGTGCCCATCGACGCGAAGGGG
AACGGTTCGCGACGGAAGAGCCGAGAATGCACGGCAAGGGCTGGAAGAAA
ATCGCGTCGCTGATCAAGACGCGCACCGTTGTGCAGATCCGCACGCACGC
CCAGAAGTACTTCCAGAAGGTCGCGAAGGCGAAGCAGAACGGCGACCACG
GCGAGGTGCCCATCGACGCGAAGGGGAACGGTTCGCGACGGAAGAGCCGA
GACCGGCGGCGAATGGAAGACGTGTTCAGGGGACCCACCGCCGTCGCGCC
CTCCCTGCAGCCATACGTGGCCGGCGCGGGAGCCGTAGAGACCGGCCTCT
ACCGTTTCTTGTCCCCGATTGCCATCCAGCCGGCGGCGAATGGAAGACGT
GTTCAGGGGACCCACCGCCGTCGCGCCCTCCCTGCAGCCATACGTGGCCG
GCGCGGGAGCCGTAGAGACCGGCCTCTACCGTTTCTTGTCCCCGATTGCC
ATCCAGATTGTCGAACGACCTCCACTGGCAGGACAGGGGGATACGACCGC
CGGCACGGGCGCGGCGGGAGCAGCAGGAGGACATCCATTGTCGAACGACC
TCCACTGGCAGGACAGGGGGATACGACCGCCGGCACGGGCGCGGCGGGAG
CAGCAGGAGGACATCCCGGTGCCGGCTGCTCGGTGCCGGCTGCTGAGA
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