mRNA_S-dermatodea_contig11289.821.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: D7G656_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G656_ECTSI) HSP 1 Score: 283 bits (724), Expect = 4.580e-89 Identity = 214/398 (53.77%), Postives = 234/398 (58.79%), Query Frame = 1
Query: 1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGNGSRRKSRDRRRMEDVFRGPTAVAPSLQPYVAGAGAVETGLYRFLSPIAIQIVERPPLA-GQGDTT-------------AGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAATGVQPPNWYRAGRGVDDLLSEAEGLDWLADSGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADFPSDLG-QPSLKKVRAGPPVSSLAAANNTALTSSSSLPGATAAAVTXXXXXXSTPGVNLPGTV---GQPPASSPLPLARPPAPP----PGTGGALASAALTPSGLQGSDTEEGHLSGLSDLESLIED 1128
+NTGRWT+DEHRLFL GL++HGKGWKKIASLIKTRTVVQIRTHAQKYFQK+AKAKQNG+HG+V +D+KG+GSRRKSR RRRMED+ RG TAVAPSLQPYVAGAGAVETGLYRFLSPI IQ +ERPP A GQG T G GH + V PPNWYRAGRGVDDLL+EAEGLDWLADSGGA XXXXXXXXX S+L QP LKKVR+ T SS P ATA + XXXXXX P+S LP RP A P P T G +A LTPSGLQGSD EEGHLSGLSDLESL+ED
Sbjct: 4 KNTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSKGHGSRRKSRGRRRMEDLLRGSTAVAPSLQPYVAGAGAVETGLYRFLSPITIQDLERPPAAAGQGGTAXXXXXXXXXXXXXGGASLQSQLAGHATSSA------------XXXXXXXXXXXXXXXXXXVLPPNWYRAGRGVDDLLTEAEGLDWLADSGGAVAVTSVSAVNPAAAXXXXXXXXXVAGAHAGVARVASS---------SELSSQPLLKKVRS--------------TTVDSSAPLATATTMNXXXXXXXXXXXXXXXXXXXXAMTPSSWSLPPPRPVACPXXXAPPTAG-VAVDELTPSGLQGSDAEEGHLSGLSDLESLMED 365
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A6H5L4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H1_9PHAE) HSP 1 Score: 261 bits (667), Expect = 7.330e-75 Identity = 139/213 (65.26%), Postives = 154/213 (72.30%), Query Frame = 1
Query: 1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGNGSRRKSRDRRRMEDVFRGPTAVAPSLQPYVAGAGAVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAATGVQPPNWYRAGRGVDDLLSEAEGLDWLADSGGA 639
+NTGRWT+DEHRLFL GL++HGKGWKKIASLIKTRTVVQIRTHAQKYFQK+AKAKQNG+HG+V +D+KG+GSRRKSR RRRMED+ RG TAVAPSLQPYVAGAGAVETGLYRF LAG ++AG PT +AG A A A V PPNWYRAGRGVDDLL+EAEGLDWLADSGGA
Sbjct: 572 ENTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSKGHGSRRKSRGRRRMEDLLRGSTAVAPSLQPYVAGAGAVETGLYRF-------------LAGHASSSAGAS----------------------------PTTATAGAATAVAAAVLPPNWYRAGRGVDDLLTEAEGLDWLADSGGA 743
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A6U4FI15_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FI15_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.060e-41 Identity = 109/219 (49.77%), Postives = 126/219 (57.53%), Query Frame = 1
Query: 1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNG-DHGEVPIDAKGNGSRRKSRDRRRMEDVFRGPTAVAPSLQPYVAGAG---AVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAAT--GVQP-PNWYRAGRGVDDLLSEAEGLDWLADSGG 636
+NTGRW+++EHRLFL GL+MHGKGWKKIA LIKTRTVVQIRTHAQKYFQK+AKAKQ G + G V +D +G G + R +E TAVAPSLQPY+ G +VE+GLY+FLSP I D A AA A GV A A G P P+WY G VD LL+EAEGLDWLADSGG
Sbjct: 29 ENTGRWSYEEHRLFLKGLEMHGKGWKKIAELIKTRTVVQIRTHAQKYFQKLAKAKQGGAEPGAVLLD-RGLGRKNGKRKSGSLEG-----TAVAPSLQPYMTLPGVNGSVESGLYKFLSPNVITSFV------DDDKAAKAQAASRASXX--------------XXXXXXAQRAKQGVTPAEAVRMGYAPTPDWYAKGNNVDVLLNEAEGLDWLADSGG 221
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A7S2UGN8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGN8_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.050e-33 Identity = 102/275 (37.09%), Postives = 135/275 (49.09%), Query Frame = 1
Query: 1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN---------------------------------------GSRRKSRDRRRMEDVFRGPTA------VAPSLQPYVAGAG---------AVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHP-----GAGC*P-----PLPPPRPHPRVLRPTFCSAGVALAAATGVQPPNWYRAGRGVDDLLSEAEGLDWLADSG 633
+NTGRWT +EHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK++KA+QNG+ G+V ++ +G S ++ ++ M +G ++ VAP+L PYV G A+E L+R+L+P PL GQ A AG +P GA P H +L P++ S G +A P W+ G VDDLL+EA+ LDWLAD+G
Sbjct: 72 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLSKARQNGEEGDVSMEGRGGIDMLTPGIIVSSALPPSSXXXXXXXXXXXXXXXAISSVVASAQREGKKQSMAASSKGSSSIPTLPVVAPALAPYVIANGGPQGTISASALENSLFRYLTPAGSAPSTADPLFGQHPAV--NAVARQAGANPIVLPDGAALADSAELSPTGVADQHNLLLFPSWVSDGKESSA------PTWFSKGGDVDDLLTEADALDWLADTG 338
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A6S8P3T4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8P3T4_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.410e-31 Identity = 104/269 (38.66%), Postives = 132/269 (49.07%), Query Frame = 1
Query: 1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN---------------------------GSRRK-------SRDRRRMEDVFRGPT----AVAPSLQPYV----AG--------AGAVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRV------LRPTFCSAGVALAAA--TGVQPPNWYRAGRGVDDLLSEAEGLDWLADSG 633
+NTGRWT +EHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK+AKA+QNG+ GEV ++ +G G++RK S ++ + G AVAP+L +V AG + A+E L+RFL+P + + P L A AG +P LP P + PT C A + + + G PP WY G VD LL A LDWLAD G
Sbjct: 43 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGEVIMEGRGGLSTTAGHDLVGXXXXXXXXXXXXXPLAGTKRKAIQSIVHSAQKQGKKMAVEGKPLPLPAVAPALANFVVRDKAGFAANGTLTSSALEDSLFRFLTPAPVSTTDSPVL---------NDVARQAGANPIT-----LPSENPSSAPTNGDGEVSPT-CVADINIYPSWTDGKDPPAWYAKGADVDALLDVAGTLDWLADPG 296
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: W7TWM0_9STRA (SANT/Myb domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWM0_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.590e-31 Identity = 101/276 (36.59%), Postives = 132/276 (47.83%), Query Frame = 1
Query: 1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN---GSRRKSRDRRR-------MEDVFRGPTAVAPSLQPYVAGA----------------GAVETGLYRFLSPIAIQIVER----------PP------------LAGQGDTTAGTGAAGA-----------AGGHPGAGC*PPLPPPRPHPRVLRPTF-----CSAGVALAAATGVQPPNWYRAGRGVDDLLSEAEGLDWLADSGG 636
+NTGRWT +EH LFL GL+MHGKGWKKIA LIKTRTVVQIRTHAQKYFQK+AKAK+NG HG++ + +G G R K +RR + A++P+LQ Y+ G+ A+E GLYRFLSP+ + PP + G+TT G++G A G P PR+ R T CS P W+ G +++LL++A +DW DSGG
Sbjct: 98 ENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDM-LGMEGTRFGGKRVKFTGKRRGLVYGSYLVGAEATSAAISPALQSYMPGSWAGREEGEALSDKEEDAAIEKGLYRFLSPVVLDAAASNLDATAPEVLPPSTPGTGVHANGVVGADGETTEEDGSSGGDNVDVSETTDDADSSSG----------EPLPRLARVTNDMYERCSV------------PTWFMKGGDIEELLADAAAIDWREDSGG 350
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: B7GAW9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAW9_PHATC) HSP 1 Score: 130 bits (327), Expect = 5.240e-30 Identity = 100/287 (34.84%), Postives = 132/287 (45.99%), Query Frame = 1
Query: 1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN---------------------GSRRKS---------RDRRRMEDVFRGPT----------AVAPSLQPYVA-----------------------GAGAVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAATGV-------------QPPNWYRAGRGVDDLLSEAEGLDWLADSG 633
+NTGRWT +EHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK+AKA+QNG+ G+V ++ +G G++RK+ R +++ PT VAP+L Y A+E L+RFL+P+ V PPL A AG + P+ P +P + PT G + TGV +PP+WY G +D LL + LDWL D+G
Sbjct: 115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGRGGVASITSVSTTAVLPKRRRQTTGTKRKAIQSVVASAQRQGKKLAAAKTNPTRHHPLPPPLPTVAPALAHYTLPSTAMMAKNGTAVKEEYVSPTNLSGPALEDSLFRFLTPLP---VSEPPL---------NEVARQAGAN-------PISLPTDNPSSI-PTV---GAGEISPTGVSDLMLYPSWTDSKEPPSWYSKGADIDALLDMGDSLDWLDDTG 378
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: B7GAX0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAX0_PHATC) HSP 1 Score: 130 bits (328), Expect = 1.870e-29 Identity = 100/287 (34.84%), Postives = 132/287 (45.99%), Query Frame = 1
Query: 1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN---------------------GSRRKS---------RDRRRMEDVFRGPT----------AVAPSLQPYVA-----------------------GAGAVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAATGV-------------QPPNWYRAGRGVDDLLSEAEGLDWLADSG 633
+NTGRWT +EHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK+AKA+QNG+ G+V ++ +G G++RK+ R +++ PT VAP+L Y A+E L+RFL+P+ V PPL A AG + P+ P +P + PT G + TGV +PP+WY G +D LL + LDWL D+G
Sbjct: 115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGRGGVASITSVSTTAVLPKRRRQTTGTKRKAIQSVVASAQRQGKKLAAAKTNPTRHHPLPPPLPTVAPALAHYTLPSTAMMAKNGTAVKEEFVSPTNLSGPALEDSLFRFLTPVP---VSEPPL---------NEVARQAGAN-------PISLPTDNPSSI-PTV---GAGEISPTGVSDLMLYPSWTDSKEPPSWYSKGADIDALLDMGDSLDWLDDTG 378
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A7S1V9A3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V9A3_9STRA) HSP 1 Score: 128 bits (321), Expect = 4.680e-29 Identity = 102/275 (37.09%), Postives = 128/275 (46.55%), Query Frame = 1
Query: 1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKG---------------NGSRRKSRD---RRRMEDVFRGPTAVAPSLQPYVAGA-----------------------------------------GAVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRV---LRPTFCSAGVALAAA--TGVQPPNWYRAGRGVDDLLSEAEGLDWLADSG 633
+NTGRWT DEHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK+AKA+QNG+ G+V +DA+G +G RR+ R+ + V T A AG+ A+E L+RFL+P P+A D A AG +P P P P + + PT C VA+ + P+WY G VD LL A+GLDWL D+G
Sbjct: 165 ENTGRWTADEHRLFLQGLEEHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVSMDARGGTASVALGLPVSTSASGKRRRQTTGTKRKAISSVVASVTREAKRXAQQPAGSILPPQQLXXXXXXXXXXXXXXXXXXXXXXXXXSSAHSAITGPALEDSLFRFLTPA--------PVA-PNDQVQVNDVARQAGANPITV---PTDNPSAAPSISGEVSPT-CVTDVAIFPSWTDAKDMPSWYAKGADVDVLLDAADGLDWLTDTG 426
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Match: A0A1Z5KDK7_FISSO (Protein MYSM1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDK7_FISSO) HSP 1 Score: 126 bits (317), Expect = 9.000e-29 Identity = 100/282 (35.46%), Postives = 134/282 (47.52%), Query Frame = 1
Query: 1 QNTGRWTHDEHRLFLVGLDMHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGN-----------------------GSRRK---------SRDRRRMEDVFRGPTA-------VAPSLQPYV-----AGAG--------------AVETGLYRFLSPIAIQIVERPPLAGQGDTTAGTGAAGAAGGHPGAGC*PPLPPPRPHPRVLRPTFCSAGVALAAATGVQ-------------PPNWYRAGRGVDDLLSEAEGLDWLADSG 633
+NTGRWT +EHRLFL GL+ HGKGWKKIASLIK+RTVVQIRTHAQKYFQK+AKA+QNG+ G++ ++ +G G++RK R ++ G + +AP+L +V + AG A+E L+RFL+P+ I +A Q AGA P+ P + + L A V + TGVQ PP+WY G VD LL ++ LDWLAD+G
Sbjct: 96 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEGRGGNASITSNTTATAAMTNKRRRHITGTKRKVIQSVVASAQRQAKKANLTEIGNPSKNVAVPGIAPALAYFVTPTPSSSAGPDTDLMTDDHISGPALEDSLFRFLTPVPIATDHVNDVARQ---------AGAN----------PITLPSTNGQAL------ASVPGRSPTGVQDLSIYPSWTDAKDPPSWYAKGADVDALLDVSDTLDWLADTG 352 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11289.821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11289.821.1 >prot_S-dermatodea_contig11289.821.1 ID=prot_S-dermatodea_contig11289.821.1|Name=mRNA_S-dermatodea_contig11289.821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp MHGKGWKKIASLIKTRTVVQIRTHAQKYFQKVAKAKQNGDHGEVPIDAKGback to top mRNA from alignment at S-dermatodea_contig11289:1055..7036+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11289.821.1 ID=mRNA_S-dermatodea_contig11289.821.1|Name=mRNA_S-dermatodea_contig11289.821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5982bp|location=Sequence derived from alignment at S-dermatodea_contig11289:1055..7036+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11289:1055..7036+ >mRNA_S-dermatodea_contig11289.821.1 ID=mRNA_S-dermatodea_contig11289.821.1|Name=mRNA_S-dermatodea_contig11289.821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig11289:1055..7036+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |