mRNA_S-dermatodea_contig11287.820.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11287.820.1
Unique NamemRNA_S-dermatodea_contig11287.820.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11287.820.1 vs. uniprot
Match: D7FMT1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMT1_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.160e-23
Identity = 52/73 (71.23%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  103 LMEYVGSLAQPSYIQALAGWAVVWAALVSIPPGHHAQKNVIMMNMAHGLVAAGLATVTIWTGWDSTFSTAASV 321
            L E +    Q SY+QALAGW V+W ALVSIPPGH  QKNVIMMNMAHG VA  LA VTI TG DSTFSTA+SV
Sbjct:    4 LKEQIAGWPQFSYVQALAGWFVLWTALVSIPPGHTEQKNVIMMNMAHGAVATSLAVVTILTGCDSTFSTASSV 76
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11287.820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMT1_ECTSI1.160e-2371.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11287contigS-dermatodea_contig11287:3428..7313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog2880.D7FMT1
EggNOG OGs2C438@1,2RYKU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_000260.1
Exons3
Model size323
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11287.820.1prot_S-dermatodea_contig11287.820.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11287 3429..7313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.7888083-CDS-S-dermatodea_contig11287:3428..35121622924194.7888083-CDS-S-dermatodea_contig11287:3428..3512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11287 3429..3512 -
1694079083.6255205-CDS-S-dermatodea_contig11287:3428..35121694079083.6255205-CDS-S-dermatodea_contig11287:3428..3512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11287 3429..3512 -
1622924194.8009424-CDS-S-dermatodea_contig11287:4098..41881622924194.8009424-CDS-S-dermatodea_contig11287:4098..4188Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11287 4099..4188 -
1694079083.636291-CDS-S-dermatodea_contig11287:4098..41881694079083.636291-CDS-S-dermatodea_contig11287:4098..4188Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11287 4099..4188 -
1622924194.8083272-CDS-S-dermatodea_contig11287:7166..73131622924194.8083272-CDS-S-dermatodea_contig11287:7166..7313Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11287 7167..7313 -
1694079083.6459224-CDS-S-dermatodea_contig11287:7166..73131694079083.6459224-CDS-S-dermatodea_contig11287:7166..7313Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11287 7167..7313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11287.820.1

>prot_S-dermatodea_contig11287.820.1 ID=prot_S-dermatodea_contig11287.820.1|Name=mRNA_S-dermatodea_contig11287.820.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=107bp
SHQYTPAVACLQQKAKLIPPQPRSFPLLMDTAMQLMEYVGSLAQPSYIQA
LAGWAVVWAALVSIPPGHHAQKNVIMMNMAHGLVAAGLATVTIWTGWDST
FSTAASV
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mRNA from alignment at S-dermatodea_contig11287:3428..7313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11287.820.1 ID=mRNA_S-dermatodea_contig11287.820.1|Name=mRNA_S-dermatodea_contig11287.820.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3886bp|location=Sequence derived from alignment at S-dermatodea_contig11287:3428..7313- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCATCAATATACCCCGGCTGTTGCTTGTCTCCAGCAAAAGGCAAAGCT
TATACCGCCGCAGCCCCGAAGCTTCCCGCTGCTGATGGACACCGCTATGC
AGCTCATGGAGTATGTCGGTTCCCTAGCGCAGCCCTCCTATATTCAGGTA
TGTGGCGGGCACTGCTGCTGCTGTAGACATGCATTCCGCGGACCTTGATG
TGTTCCCCGCCTGGTTACCTCAATCTCGTACTGCAGTATACACAATACTA
TATAATAGTAGAGCACGTTGGAGCTTGTGCAGTGCTGCGCTTGCTGCAGC
ATGCGAGCACACGGCTGTTGTGCCGATGAATGTCGGCTGTGTTTCCCGGA
GCGGAACGCCAGCGCTGCGTGCGTGAAGACCACTCCTCGTGCTTGACTTC
TCAATTATGTCTCGACGTCTCGACTTCAGACCAAGTCGTACTGCTGTGTT
GTAGACGAAACGTCACTCCGCCAAGGTTTATCGATACGTATGATAGTATA
ATCTATAGTATGTAGGTCGGACGACCATCTGCGCCCACATAGCGACTGGG
ATCCGCCCATGCGATGGCTTGGCAGGGCTTGCTCGCCAGCAGGCATGTGC
CACGTTCCGACAAAAGCTAAAAGAGAGCGCTGTTTGGATGTCCATATGTA
TATGGATGCTACTTGTATCGATATGGTATGTACTCTGCTGTATATTCATG
GTGTAATTTATATAAAATAGAAGGTTGGAAGATGCATCTATGATACTCTG
TAGCGAGGAATCGAAACGTTTCTAAATTGAAATTACTCTTTACAACAACA
GCAGTACAGGTAGGTATCTGAGTATCTGAGTAGACCAGCAGCGCGCCCCG
CTCTCTGTGGTTGAACTGGATGACCAACAGCCCAGTAGGGCGGAGGACCC
GGGTTCAAATCTCGGCAGAATCGATGTGTATTTGTTGCTCTACTTCCGCC
GCGGAAAGCGCGAGAGCGTGAGTAAATCAATAATCCGATAAATCGGCGAG
CTGTGGGAGTGCCGAACGCCGAACTCAATGCGCGATAAAAATCAAAGGTG
AGAACCGGGGATAAGATAAGAGAGATGGGATGGTCCCTTGTGACTACTTG
CACAGACGGACCTCGGAAAAGCAAGTCTGTCATACAGTATCATACAGCTG
TATTGATATTGAACAGAAGGTGTCATATATGTCAATCGGCCTAGAGCAGT
TATACTGTATATAAAAGCTTTCTCCACTCTCTGTAAGAAGTACAACACTA
TTAATAGAAGACACAGAAGAAACACCGACTACTGTAAACTCTGTTGTACC
TTCAACGGCATGTCATATGCCGTTGAAGGTACAACAGAGTTTACTGTATG
GCAACATCGTCGTATTATACTCTGCAGCTATCATAGAGCACATAGCCGTA
TGATAGCATCGCGCGGTCATGTTGTGATACTTCGTATAAAATGATGCGAT
AACTGCGTCGTTTGGGGTTCGATGTGCAAAAAGTCGTGTTTTAGCTTATT
ATAAAAATATACAGCTGTAGTACAGAGTACTTGTACAAGTACTTGTGATG
GTATAACTGTAACTACTGCTGGGTTCGGTGCGGTCGGGGCCATTTTCCAT
CCCAGAACAACGCCTTTTTACAAACCTCACGTTTCGTGAATTGATCCCTC
ACTGCACGTTTTTCACGAAAGGTGAGGTGACCTTTTTTTTTTGCTGCAAA
ACGTGAATATCAGAAAAGCGGCGCACTGGCTGTCTCGCGTTTAGTGGGGG
GAAAGTGCTCGATAGAAACGGCCTATATACTGTACAAGTACTGGTAGCAT
TTGTGAGATTGGGCCTCACATCGCTCCGATTCCAATTCAAAATTCCACCG
CGGCACGAGCAGTGTTGGTACTGTTAATACAAGTATCTGCTGAACATCTA
CATATGTACTTGTGCAAGTAGGCCTCGAAAGCGCCCTCCAGCCTCGGTGC
GCGTCAGGCAGCACTCGTGGACGTCATGGCGATGTGCATACAAGCACACG
TTTGATTATGCGCTTTACAGGATTACGACATTACGACTCTTTCTGTCATA
CTTTATCAAAACTGCGGTGTTTGGTCTTATGGGTGTTACGGCTGAAACGA
TCCCCCATCACTGGTGCTCGGAGCAATAATAGACTTTGACGCTTGTTCGA
CAAAATAAATTTCCGTCTTTTTTCACTGGTCAAAGCTGACAGTCTTTGGT
CGGAATGTGATCGCAACGTCCGTTGAGGAAATTTGGCTGAAACGCGGCGC
AGCCGCGTTTGGGCGCTACAGGCCTCGGATGAAGGTTCTGAGGGTGGTAT
GGGTTAGGGTTAGGGTTAGCGTTAGCGTTAGAGAGGGTTGGGTCGACCCC
TGGGGCCCCGTGCCAGCGCTTTCAAAACACAATTAGTATAGTATAAGCTG
GGTTATCATAAGTTCCTCGGAAAATTCTAAAGTGTCGACAATCTGGTAAT
GTCCCCTTAGCTGTGTGATGTTGCTGTGCTTGTACGTGAATCGGGTTGAT
GTTATGTGTTGTTCATCCGCTGGTGTTGTGTACAGCAGTAGTTTTGCTTT
GCAGAAGATGCATCTCACCTGGATTGCTTTTTTTTGTACAATGGGTGTCG
CCGTCACGTGTTGCAAGGGGAAGGGATCTCGCGGGTCGTGGCTATCATAG
TGGAAGGGAGGCACTGTACTTGTACACTTCTCGACTAAGCATCAGAGGGA
CGGGGGATTACCGAGGGTGGTACCTTCGAGCTCTGTAACCCACGAGGCCC
CTCGCGAGGCCCCTTCTGCGTTGGCTTGTGGGTTGCTCTGTTTTGATGTT
GGAAATAAAAAAGGCGTTTGGATAAGGGGGTTTTAACAGAGTTTGGCCGC
TCGCTTCGCCTTACCGCGCAACATTTTCCCTTTCCAGAGTTCGAAGCTTC
GCATGCCGCATCATCACCCCCCGTTGTTGTCGCTCGACACAGCGCGTCAA
TTACGACTCTTGTTACGACTGCCCCTCTCAGGGCCTACCTACCGATTCGA
GTGTTCGTGATGTTGATGATGGTGTTGATGATGGTGATGATGTTGACCGC
TTGACCCACTGTCCTTGCTTGCTGTCGTTTGCCGTTTGGCCTTCTTTGTG
TGTTTGGTGCGTTATCGTACAACAGGCACTTGCAGGTTGGGCGGTGGTGT
GGGCCGCCTTGGTGAGCATCCCGCCAGGACACCACGCGCAAAAAAACGTC
ATCATGATGAACATGGTGAGCTATTTTCAACATGTATTTACTATTTACCG
TTTACTTGTTGCGCCCCAGGGATTCCACCCGAGAATAATTGAAGAAGGGA
GTCTCGACAAATTGACGTTCGCCACAAACCACCCTTTCCCTTCCCCTTCC
CCCGAGCATACACAGCCGCTCCCCAAAAATCGAGATGGCGGCATTCCAGG
GACTCGCGAAGCAATCATGCCAGTGTCACAGAATCGATACAGTGTGCGCA
TCCCAACCTCTACTCAAGAACAAGAAGCCCCCAGTACTATTTTAGTATGT
TTTATAAAGTAACATTTCCATTAGAATCACTCCGAGGTAGCCGCCTGAGA
GCGCAGCATTAGCATTCATTTTCTATCGCAGTTGGCACATCCCATGGATT
CCGGGCACAACCCCTGCGTGCCATGAAGACTGACCCTCGAGGAACAAGCG
GGACGGGCGCAAACCCAATGTATTCTCCTTGGCCTTGACGTGCTCTACAC
GCACAAAAAAAAGCACCCCGTACATTTTTGACTGCGCTCTGATCCAACCC
CCCAACGTGACGTGCGGTTACACATCCACGCTCGACCGAACGACAACACA
GGCTCACGGGTTGGTCGCGGCGGGGCTAGCAACGGTAACCATTTGGACGG
GGTGGGATAGCACCTTCTCGACGGCGGCGAGCGTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11287:3428..7313-

>mRNA_S-dermatodea_contig11287.820.1 ID=mRNA_S-dermatodea_contig11287.820.1|Name=mRNA_S-dermatodea_contig11287.820.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at S-dermatodea_contig11287:3428..7313- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCATCAATATACCCCGGCTGTTGCTTGTCTCCAGCAAAAGGCAAAGCT
TATACCGCCGCAGCCCCGAAGCTTCCCGCTGCTGATGGACACCGCTATGC
AGCTCATGGAGTATGTCGGTTCCCTAGCGCAGCCCTCCTATATTCAGTCG
CATCAATATACCCCGGCTGTTGCTTGTCTCCAGCAAAAGGCAAAGCTTAT
ACCGCCGCAGCCCCGAAGCTTCCCGCTGCTGATGGACACCGCTATGCAGC
TCATGGAGTATGTCGGTTCCCTAGCGCAGCCCTCCTATATTCAGGCACTT
GCAGGTTGGGCGGTGGTGTGGGCCGCCTTGGTGAGCATCCCGCCAGGACA
CCACGCGCAAAAAAACGTCATCATGATGAACATGGCACTTGCAGGTTGGG
CGGTGGTGTGGGCCGCCTTGGTGAGCATCCCGCCAGGACACCACGCGCAA
AAAAACGTCATCATGATGAACATGGCTCACGGGTTGGTCGCGGCGGGGCT
AGCAACGGTAACCATTTGGACGGGGTGGGATAGCACCTTCTCGACGGCGG
CGAGCGTCGCTCACGGGTTGGTCGCGGCGGGGCTAGCAACGGTAACCATT
TGGACGGGGTGGGATAGCACCTTCTCGACGGCGGCGAGCGTC
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