mRNA_S-dermatodea_contig11257.807.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11257.807.1
Unique NamemRNA_S-dermatodea_contig11257.807.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11257.807.1 vs. uniprot
Match: A0A6H5L1F7_9PHAE (MMR_HSR1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F7_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 5.620e-94
Identity = 152/221 (68.78%), Postives = 177/221 (80.09%), Query Frame = 1 
Query:    1 DELAAEGVPFLPVSPRTELWLREQESEGGRVAYRRGDSQFRIPPAFEQLMDTTAIARARAAFDICGGTGIMAAVSAAVALRPPTLVFPVGDFVTLQSSGWGGDGAPAAPLRTCRLLRALSTARDVFAAEKSEGIASGDLVSAEVVPASADSAARESPLSLELDEAIGGGAWMVRLVTTRKAVQVWKVRAAAAAASGGRAGKPLAGVQFGDLRNKERRRGRS 663
            DE+A EGVP + +SPRTELWLREQESEGGRV+YRRGDSQFRI PAF+ LMD   I  ARAAFD+CGGTGI+AA S A+ L PPTLVFPVGDF+TLQSSGW GDGAP A LRTCRL+R  S+ARD+FA EK EGI +G+LV AE   A  +SA R  PL L+LD  IG GAW+VRL  +RKA ++W   AA AAA+GG+ GKPLA VQFGDLR+K+RRRG+S
Sbjct:  188 DEMALEGVPVVAISPRTELWLREQESEGGRVSYRRGDSQFRIHPAFQSLMDKKEITNARAAFDVCGGTGILAAASTAIGLDPPTLVFPVGDFLTLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKKEGILAGELVGAEASLAPTNSAGRAGPLPLDLDAPIGNGAWLVRLAGSRKAAKMWN--AAPAAATGGKGGKPLASVQFGDLRSKDRRRGKS 406
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BLAST of mRNA_S-dermatodea_contig11257.807.1 vs. uniprot
Match: A0A836CLS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.490e-25
Identity = 93/237 (39.24%), Postives = 116/237 (48.95%), Query Frame = 1 
Query:    4 ELAAEGVPFLPVSPRTELWLREQESEGGRVAYRRGDSQF---RIPPAFEQLMDTTAIARARAAFDICGGTGIMAAVSAAVALRPP--TLVFPVGDFVTLQSSGWGGDGAPAAPLRTCRLLRALSTARDVFAAEKS--EGIASGDLVSAEVVPASADSAARESPL--------------SLELDEAIGGGAWMVRLVTTRKAVQVWKVRAAAAAASGGRAGKPLAGVQFGDLRNKERR 651
            E ++       VSP  E WL EQ+ EGGR+++RRG   F    I PAF  ++      RA AA   CGG+GI AA+ AAV L  P  TLV PVGD  TLQS GW G GAP A LR C  +   +TA  +    KS      SG+LV A  +  S   AA                    L  +EAIG G  +V + TTR+ V +W+            A  P   VQFGDLR+K R+
Sbjct:   74 EGSSTATAVFAVSPWLERWLAEQQ-EGGRLSHRRGSDSFVASAIKPAFASVIPAAEAWRAAAACRACGGSGIPAAIVAAVGLCSPPLTLVLPVGDLATLQSLGWEGVGAPRAALRDCLQVWPGTTAAQLCEILKSPPHERLSGELVQATALSVSWSRAAAXXXXXXXXXXXXXXXVVRQLRSNEAIGAGCHVVAIETTRRPVPMWQGEXXXXXXXXXXAKLPS--VQFGDLRSKNRK 307
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BLAST of mRNA_S-dermatodea_contig11257.807.1 vs. uniprot
Match: A0A7S3TMX5_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TMX5_EMIHU)

HSP 1 Score: 72.0 bits (175), Expect = 3.020e-11
Identity = 56/127 (44.09%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:  196 GGTGIMAAVSAAVALRPPTLVFPVGDFVTLQSSGWGGDGAPAAPLRTCRLLRALSTARDVFAAEKSEGIASGDLVSAEVVPASADSAARESPLSLELDEAIGGGAWMVRLVTTRKAVQVWKVRAAAA 576
            G TG +  +SAAVALRPPTL FP  D  TL S G G D   AA L  C LLR LST  D   A + EG+ +GDLV AE     A          +  D+ +     +VRL T R A   W+ RA AA
Sbjct:   60 GSTGTLDVLSAAVALRPPTLAFPSSDLATLASLGRGAD---AARLFDCLLLRPLSTVADFCEAVRREGLCAGDLVRAE-----ARGVFTPEVAVVRRDDVVAAKGPIVRLQTRRAA---WQGRAEAA 175
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BLAST of mRNA_S-dermatodea_contig11257.807.1 vs. uniprot
Match: R1DHV0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DHV0_EMIHU)

HSP 1 Score: 71.6 bits (174), Expect = 5.390e-10
Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 1 
Query:  196 GGTGIMAAVSAAVALRPPTLVFPVGDFVTLQSSGWGGDGAPAAPLRTCRLLRALSTARDVFAAEKSEGIASGDLVSAEVVPASADSAARESPLSLELDEAIGGGAWMVRLVTTRKAVQVWKVRAAAA 576
            G TG +  +SAAVALRPPTL FP  D  TL S G    GA AA L  C LLR LST  D+  A + EG+ +GDLV AE     A          +  D+ +     +VRL T R A   W+ RA AA
Sbjct:  631 GSTGTLDVLSAAVALRPPTLAFPSSDLATLASLG---RGANAARLFDCLLLRPLSTVADLCEAVRREGLCAGDLVRAE-----ARGVFTPEVAVVRRDDVVAAKGPIVRLQTRRAA---WQGRAEAA 746
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11257.807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L1F7_9PHAE5.620e-9468.78MMR_HSR1_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CLS2_9STRA5.490e-2539.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3TMX5_EMIHU3.020e-1144.09Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1DHV0_EMIHU5.390e-1044.09Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11257contigS-dermatodea_contig11257:32..1913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue1e-10
Seed eggNOG ortholog2903.EOD08279
KEGG koko:K06942
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008144,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019001,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.GTP binding
EggNOG OGsCOG0012@1,KOG1491@2759,KOG2551@1,KOG2551@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised GTP-binding protein, C-terminal
Ec32 orthologEc-18_001750.1
Exons2
Model size1025
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11257.807.1prot_S-dermatodea_contig11257.807.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11257 1036..1554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924193.9314702-UTR-S-dermatodea_contig11257:31..1541622924193.9314702-UTR-S-dermatodea_contig11257:31..154Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11257 32..154 +
1694079083.0267682-UTR-S-dermatodea_contig11257:31..1541694079083.0267682-UTR-S-dermatodea_contig11257:31..154Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11257 32..154 +
1622924193.942851-UTR-S-dermatodea_contig11257:1011..10351622924193.942851-UTR-S-dermatodea_contig11257:1011..1035Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11257 1012..1035 +
1694079083.040102-UTR-S-dermatodea_contig11257:1011..10351694079083.040102-UTR-S-dermatodea_contig11257:1011..1035Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11257 1012..1035 +
1622924193.9660609-UTR-S-dermatodea_contig11257:1554..19131622924193.9660609-UTR-S-dermatodea_contig11257:1554..1913Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11257 1555..1913 +
1694079083.0611482-UTR-S-dermatodea_contig11257:1554..19131694079083.0611482-UTR-S-dermatodea_contig11257:1554..1913Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11257 1555..1913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924193.9573903-CDS-S-dermatodea_contig11257:1035..15541622924193.9573903-CDS-S-dermatodea_contig11257:1035..1554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11257 1036..1554 +
1694079083.04964-CDS-S-dermatodea_contig11257:1035..15541694079083.04964-CDS-S-dermatodea_contig11257:1035..1554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11257 1036..1554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11257.807.1

>prot_S-dermatodea_contig11257.807.1 ID=prot_S-dermatodea_contig11257.807.1|Name=mRNA_S-dermatodea_contig11257.807.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=173bp
MDTTAIARARAAFDICGGTGIMAAVSAAVALRPPTLVFPVGDFVTLQSSG
WGGDGAPAAPLRTCRLLRALSTARDVFAAEKSEGIASGDLVSAEVVPASA
DSAARESPLSLELDEAIGGGAWMVRLVTTRKAVQVWKVRAAAAAASGGRA
GKPLAGVQFGDLRNKERRRGRS*
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mRNA from alignment at S-dermatodea_contig11257:32..1913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11257.807.1 ID=mRNA_S-dermatodea_contig11257.807.1|Name=mRNA_S-dermatodea_contig11257.807.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1882bp|location=Sequence derived from alignment at S-dermatodea_contig11257:32..1913+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGAACTGGCGGCCGAGGGTGTCCCATTTTTACCGGTGAGCCCTAGAAC
GGAGCTCTGGTTGCGCGAGCAGGAGAGCGAGGGTGGCAGGGTGGCCTATC
GGCGAGGAGACTCTCAATTTCGGGTGAGCGCGGCAGGTCTACCGTACGTT
CGTCTTGGGGACTCGCTATAATCGTGTCTTACCATACTTCGGATGATCGG
AGCTGAAACATGTATACGGGCGAAGTGTCGCGGTAGAACACCGCCCTATT
TACTTCGAGCGGCCGTGCGATCTTGGGAACAATGCAGCTGTGTAGTTTGT
ATGTGCGGTTGCAAGACAGCATAGCACTGCCTTCGTTTTCGTCCTCTTCT
GAAGGAGGTGAAAACCGCGCTTCGAAATGTCCTTCGTTCGACACCCTTCT
TACTCACAATGCCATGGCAGCCCCAAACCCCAAGGCCTGGAAACGTGGTA
AGGATGTGTGACAATTATATTACTGTTTCGTGGAGACGCACCAAAATGGT
ACTTGTACAGCGTTTGGTTGTTGTGAAAAAAATGCTGAAGGAAAAAGGTT
TGGAAGTGGCACGTGGCAAATATGTGACCCGAGACGCATGGAATCGAAGT
AGTGAATCGATGGGGGTGAATCACATTCACATCCGGTGCTCCTGGACAAA
TGAGCATCCCTGCCTGACGATTCTTGTGACAGCTATTGTAAGTCGAGATG
CAAGTAAAGTTACTTGAACGGTTTTCATTATCTCCGAATGGGGCGTCACA
CCGAGAACCGTCTATCGAAAATGAAAAGGTATGGCTGTATGTGGTGCATT
TCCAATTCTCAACACCTCAGAATAGCCTCCCGTCCCGTGCCTTAACTCCC
AACACAATCGAAGCCTCTGCTGCTATGAATGCCTGGATCTATAATATTCC
TCACAACAGCCTTAACCTTGGTACACCAGAGAATCGCGCAAGTATGTCAT
GCTCCCATGTGCCTCGTAAATCCGTTGCAGATCCCCCCTGCTTTCGAACA
ACTGATGGACACGACCGCCATCGCAAGGGCCCGCGCGGCATTCGACATAT
GTGGCGGCACGGGCATAATGGCCGCCGTCTCTGCGGCAGTTGCGCTCCGT
CCTCCCACGCTAGTTTTTCCCGTAGGCGACTTCGTGACTCTGCAAAGCTC
GGGCTGGGGGGGGGACGGGGCGCCAGCCGCCCCACTTCGAACCTGCCGCC
TGCTGCGAGCACTTTCGACCGCCAGAGACGTGTTTGCCGCCGAAAAGAGC
GAGGGAATTGCAAGCGGAGACCTAGTCAGTGCCGAAGTCGTGCCCGCATC
GGCAGACTCGGCAGCACGAGAAAGCCCCTTGTCACTCGAACTAGATGAAG
CCATCGGCGGAGGCGCGTGGATGGTGCGCCTAGTCACGACCCGCAAGGCC
GTGCAAGTGTGGAAAGTGAGGGCGGCGGCGGCGGCAGCATCAGGTGGTAG
GGCCGGCAAGCCGCTTGCTGGCGTTCAGTTCGGCGACCTTCGGAACAAGG
AGAGGCGAAGAGGAAGGTCCTGACCGCGAGTATGGAAGAGGCCGTGATGA
GTAGAATGCGGTGCAGTCTTGGGGCCACGACGTGCGCGAGGATGGTTGTA
AGCAGGGCAAATAGTTGGCGCGTTTTTGTACTAGACTCGAGGCAAATCTT
AATATAGTATTGGCGTCCTGGTCAGAATCAATGGTGGCATGAGCAGAGAA
GTCTGTTGGGCAGCCTTCAGAACGTCGTCGTAAGCTCGATTTCCGGCGTA
GGCCGTCCTTGTTTGTGAGCGAGGAGCGACGCTGTGAGTCTCTACCGGTG
GCGCAGGCGGGTACATGCCAGTCACGTGACACGTTTCATATTTCCTTCAA
GGCTAAGGGTTCTCCAAATCGATTACTTGTAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11257:32..1913+

>mRNA_S-dermatodea_contig11257.807.1 ID=mRNA_S-dermatodea_contig11257.807.1|Name=mRNA_S-dermatodea_contig11257.807.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at S-dermatodea_contig11257:32..1913+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACACGACCGCCATCGCAAGGGCCCGCGCGGCATTCGACATATGTGG
CGGCACGGGCATAATGGCCGCCGTCTCTGCGGCAGTTGCGCTCCGTCCTC
CCACGCTAGTTTTTCCCGTAGGCGACTTCGTGACTCTGCAAAGCTCGGGC
TGGGGGGGGGACGGGGCGCCAGCCGCCCCACTTCGAACCTGCCGCCTGCT
GCGAGCACTTTCGACCGCCAGAGACGTGTTTGCCGCCGAAAAGAGCGAGG
GAATTGCAAGCGGAGACCTAGTCAGTGCCGAAGTCGTGCCCGCATCGGCA
GACTCGGCAGCACGAGAAAGCCCCTTGTCACTCGAACTAGATGAAGCCAT
CGGCGGAGGCGCGTGGATGGTGCGCCTAGTCACGACCCGCAAGGCCGTGC
AAGTGTGGAAAGTGAGGGCGGCGGCGGCGGCAGCATCAGGTGGTAGGGCC
GGCAAGCCGCTTGCTGGCGTTCAGTTCGGCGACCTTCGGAACAAGGAGAG
GCGAAGAGGAAGGTCCTGAATGGACACGACCGCCATCGCAAGGGCCCGCG
CGGCATTCGACATATGTGGCGGCACGGGCATAATGGCCGCCGTCTCTGCG
GCAGTTGCGCTCCGTCCTCCCACGCTAGTTTTTCCCGTAGGCGACTTCGT
GACTCTGCAAAGCTCGGGCTGGGGGGGGGACGGGGCGCCAGCCGCCCCAC
TTCGAACCTGCCGCCTGCTGCGAGCACTTTCGACCGCCAGAGACGTGTTT
GCCGCCGAAAAGAGCGAGGGAATTGCAAGCGGAGACCTAGTCAGTGCCGA
AGTCGTGCCCGCATCGGCAGACTCGGCAGCACGAGAAAGCCCCTTGTCAC
TCGAACTAGATGAAGCCATCGGCGGAGGCGCGTGGATGGTGCGCCTAGTC
ACGACCCGCAAGGCCGTGCAAGTGTGGAAAGTGAGGGCGGCGGCGGCGGC
AGCATCAGGTGGTAGGGCCGGCAAGCCGCTTGCTGGCGTTCAGTTCGGCG
ACCTTCGGAACAAGGAGAGGCGAAGAGGAAGGTCCTGA
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