mRNA_S-dermatodea_contig11227.791.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11227.791.1
Unique NamemRNA_S-dermatodea_contig11227.791.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Match: UPI001038C723 (uncharacterized protein LOC114362443 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI001038C723)

HSP 1 Score: 90.5 bits (223), Expect = 7.940e-19
Identity = 44/112 (39.29%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:    1 DELLPLGRCIQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIAIPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCWLCMPQGPAGAPS 336
            DE++  G  ++HS+SP ASP+V I  K+GD+R+ V+Y  L S TK  +  +PR+D++L+ L+G+++++ LDL S + Q+ +   SI+   F  P+  Y +  MP G A AP+
Sbjct:  789 DEMVDCG-IVRHSSSPYASPIVLIKKKTGDLRLCVDYRALNSKTKRDHYPLPRIDDLLDQLSGQTIFTTLDLASGYHQIPIASESIERTAFVTPDGQYEYTRMPFGLANAPA 899
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BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Match: A0A654H4L8_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654H4L8_9CEST)

HSP 1 Score: 85.5 bits (210), Expect = 4.480e-17
Identity = 43/107 (40.19%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:   16 LGRCIQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIAIPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCWLCMPQGPAGAPS 336
            LGR I+ S SP +SP+V +  K G +R+ V+Y +L + TK  +  +PR+D  L+ALAG +++S LDL S + Q+ + P+  +   F +P+ LY +  MP   A APS
Sbjct:  126 LGRIIRPSQSPWSSPIVLVKKKDGSMRLCVDYRKLNAVTKKDSFPLPRIDTTLDALAGNTMFSTLDLASGYWQVEVRPSDREKTAFAVPSGLYEFETMPFVLANAPS 232
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BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Match: A0A6H5L269_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L269_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.120e-16
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:    1 DELLPLGRCIQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIAIPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCWLCMPQGPAGAPS 336
            D L+ +G  ++ STS  ASPLV +  K G +R+T N+ +L  AT +P   +P V ++++AL G  V+SVLDL S + Q  +D +SI L        L+ W   PQG +G+P+
Sbjct:   97 DRLVSVG-ILRKSTSNWASPLVAVLKKDGSLRLTCNFKRLNEATIVPVFPMPLVSDLISALGGSKVFSVLDLMSGYFQAAIDESSIPLTAVCTSFGLFEWTRTPQGCSGSPA 207
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BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Match: A0A0X3PXJ8_SCHSO (Uncharacterized protein n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PXJ8_SCHSO)

HSP 1 Score: 84.0 bits (206), Expect = 1.510e-16
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:   28 IQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIAIPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCWLCMPQGPAGAPS 336
            I+ S SP +SP+V +  K G +R+ ++Y +L S TK  +  +PR+D  L+ LAG +++S LDL S + Q+ + PA  +   F +P+ LY +  MP G A APS
Sbjct:    7 IRPSHSPWSSPIVLVRKKDGSMRLCIDYRKLNSVTKKDSFPLPRIDATLDTLAGNTIFSTLDLASGYWQVEVRPADREKTAFAVPSGLYEFETMPFGLANAPS 109
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BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Match: A0A654I4F6_9CEST (Centromere protein X n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654I4F6_9CEST)

HSP 1 Score: 83.2 bits (204), Expect = 2.820e-16
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   22 RCIQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIAIPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCWLCMPQGPAGAPS 336
            + I+ S SP +SP+V +  K G +R+ V+Y +L + TK  +  +PR+D  L+ LAG +V+S LDL S + QL + P   +   F +P+ LY +  MP G A APS
Sbjct:  446 KIIRPSYSPWSSPIVLVRKKDGTMRLCVDYRKLNAVTKKDSFPLPRIDATLDTLAGNTVFSTLDLASGYWQLEVRPTDREKTAFAVPSGLYEFETMPFGLANAPS 550
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BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Match: A0A654HBM7_9CEST (Reverse transcriptase domain-containing protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HBM7_9CEST)

HSP 1 Score: 82.0 bits (201), Expect = 6.960e-16
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   22 RCIQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIAIPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCWLCMPQGPAGAPS 336
            + I+ S SP +SP+V +  K G +R+ V+Y +L + TK  +  +PR+D  L+ LAG +V+S LDL S + Q+ + P   +   F +P+ LY +  MP G A APS
Sbjct:  446 KIIRPSHSPWSSPIVLVREKDGTMRLCVDYRKLNAVTKKDSFPLPRIDATLDTLAGNTVFSTLDLASGYWQVEVRPTDREKTAFAVPSGLYEFETMPFGLANAPS 550
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BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Match: A0A7M3R9P4_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3R9P4_SPIER)

HSP 1 Score: 82.0 bits (201), Expect = 6.960e-16
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:   28 IQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIAIPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCWLCMPQGPAGAPS 336
            I+ S SP +SP+V +  K G +R+ ++Y +L + TK  +  +PR+D  L+ALAG  ++S LDL S + Q+ + P+  +   F +P+ LY +  MP G A APS
Sbjct:  344 IRPSQSPWSSPIVLVKKKDGSMRLCIDYRKLNAVTKKDSFPLPRIDTTLDALAGNIMFSTLDLASGYWQVEVRPSDREKTAFAVPSGLYEFETMPFGLANAPS 446
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BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Match: A0A7M3PV90_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PV90_SPIER)

HSP 1 Score: 82.0 bits (201), Expect = 7.380e-16
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:   28 IQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIAIPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCWLCMPQGPAGAPS 336
            I+ S SP +SP+V +  K G +R+ ++Y +L + TK  +  +PR+D  L+ALAG  ++S LDL S + Q+ + P+  +   F +P+ LY +  MP G A APS
Sbjct:  211 IRPSQSPWSSPIVLVKKKDGSMRLCIDYRKLNAVTKKDSFPLPRIDTTLDALAGNVMFSTLDLASGYWQVEVRPSDREKTAFAVPSGLYEFETMPFGLANAPS 313
[Close]
BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Match: A0A654GWA7_9CEST (RNA-directed DNA polymerase n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GWA7_9CEST)

HSP 1 Score: 82.0 bits (201), Expect = 7.490e-16
Identity = 39/105 (37.14%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:   22 RCIQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIAIPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCWLCMPQGPAGAPS 336
            + I+ S SP +SP+V +  K G +R+ ++Y +L + TK  +  +PR+D  L+ALAG +++S LDL S + Q+ + P+  +   F +P+ LY +  +P G A APS
Sbjct:  487 KIIRPSQSPWSSPIVLVKKKDGSMRLCIDYRKLNAVTKKDSFPLPRIDTTLDALAGNTMFSTLDLASGYWQVEVRPSDREKTAFAVPSGLYEFETIPFGLANAPS 591
[Close]
BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Match: A0A654I4D9_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654I4D9_9CEST)

HSP 1 Score: 81.6 bits (200), Expect = 9.570e-16
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:   22 RCIQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIAIPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCWLCMPQGPAGAPS 336
            + I+ S SP +SP+V +  K G +R+ V+Y +L + TK  +  +PR+D  L+ LAG +V+S LDL S +SQ+ + P   +   F +P+ LY +  +P G A APS
Sbjct:    5 KIIRPSHSPWSSPIVLVRKKDGTMRLCVDYRKLNAVTKKDSFPLPRIDANLDRLAGNTVFSTLDLASGYSQVEVRPTDREKTAFAVPSGLYEFETVPFGLANAPS 109
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11227.791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001038C7237.940e-1939.29uncharacterized protein LOC114362443 n=1 Tax=Ostri... [more]
A0A654H4L8_9CEST4.480e-1740.19Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A6H5L269_9PHAE1.120e-1639.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0X3PXJ8_SCHSO1.510e-1639.81Uncharacterized protein n=2 Tax=Schistocephalus so... [more]
A0A654I4F6_9CEST2.820e-1640.00Centromere protein X n=1 Tax=Sparganum proliferum ... [more]
A0A654HBM7_9CEST6.960e-1639.05Reverse transcriptase domain-containing protein n=... [more]
A0A7M3R9P4_SPIER6.960e-1638.83Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A7M3PV90_SPIER7.380e-1638.83Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A654GWA7_9CEST7.490e-1637.14RNA-directed DNA polymerase n=1 Tax=Sparganum prol... [more]
A0A654I4D9_9CEST9.570e-1639.05Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11227contigS-dermatodea_contig11227:800..1138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score86.3
Seed ortholog evalue1e-14
Seed eggNOG ortholog7668.SPU_017376-tr
EggNOG free text desc.retrotransposable element Tf2 155 kDa protein type 1-like
EggNOG OGs38F42@33154,COG2801@1,KOG0017@2759
COG Functional cat.G
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.7677171-CDS-S-dermatodea_contig11227:799..11381622924192.7677171-CDS-S-dermatodea_contig11227:799..1138Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11227 800..1138 -
1694079082.1894774-CDS-S-dermatodea_contig11227:799..11381694079082.1894774-CDS-S-dermatodea_contig11227:799..1138Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11227 800..1138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11227.791.1prot_S-dermatodea_contig11227.791.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11227 800..1138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11227.791.1

>prot_S-dermatodea_contig11227.791.1 ID=prot_S-dermatodea_contig11227.791.1|Name=mRNA_S-dermatodea_contig11227.791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
DELLPLGRCIQHSTSPGASPLVCISTKSGDIRITVNYHQLTSATKIPNIA
IPRVDEVLNALAGESVWSVLDLFSRFSQLTMDPASIDLAVFFMPNALYCW
LCMPQGPAGAPS*
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mRNA from alignment at S-dermatodea_contig11227:800..1138-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11227.791.1 ID=mRNA_S-dermatodea_contig11227.791.1|Name=mRNA_S-dermatodea_contig11227.791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at S-dermatodea_contig11227:800..1138- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGAGCTCCTACCTCTCGGCAGATGCATTCAGCACTCGACTTCGCCTGG
GGCCTCGCCCCTGGTTTGTATTTCGACGAAATCCGGTGACATTCGTATTA
CTGTCAACTACCACCAGCTAACCTCTGCTACGAAAATTCCTAATATTGCA
ATTCCGCGGGTGGACGAGGTTCTCAACGCCCTTGCCGGCGAATCCGTGTG
GTCTGTCTTAGACCTATTTTCGAGATTTTCGCAACTGACCATGGACCCGG
CTAGTATCGACCTCGCCGTGTTTTTTATGCCCAATGCTCTGTACTGCTGG
CTCTGCATGCCTCAAGGGCCTGCGGGTGCTCCGTCGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11227:800..1138-

>mRNA_S-dermatodea_contig11227.791.1 ID=mRNA_S-dermatodea_contig11227.791.1|Name=mRNA_S-dermatodea_contig11227.791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig11227:800..1138- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGAGCTCCTACCTCTCGGCAGATGCATTCAGCACTCGACTTCGCCTGG
GGCCTCGCCCCTGGTTTGTATTTCGACGAAATCCGGTGACATTCGTATTA
CTGTCAACTACCACCAGCTAACCTCTGCTACGAAAATTCCTAATATTGCA
ATTCCGCGGGTGGACGAGGTTCTCAACGCCCTTGCCGGCGAATCCGTGTG
GTCTGTCTTAGACCTATTTTCGAGATTTTCGCAACTGACCATGGACCCGG
CTAGTATCGACCTCGCCGTGTTTTTTATGCCCAATGCTCTGTACTGCTGG
CTCTGCATGCCTCAAGGGCCTGCGGGTGCTCCGTCGTAGGATGAGCTCCT
ACCTCTCGGCAGATGCATTCAGCACTCGACTTCGCCTGGGGCCTCGCCCC
TGGTTTGTATTTCGACGAAATCCGGTGACATTCGTATTACTGTCAACTAC
CACCAGCTAACCTCTGCTACGAAAATTCCTAATATTGCAATTCCGCGGGT
GGACGAGGTTCTCAACGCCCTTGCCGGCGAATCCGTGTGGTCTGTCTTAG
ACCTATTTTCGAGATTTTCGCAACTGACCATGGACCCGGCTAGTATCGAC
CTCGCCGTGTTTTTTATGCCCAATGCTCTGTACTGCTGGCTCTGCATGCC
TCAAGGGCCTGCGGGTGCTCCGTCGTAG
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