mRNA_S-dermatodea_contig112.775.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig112.775.1 vs. uniprot
Match: D7G6U0_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U0_ECTSI) HSP 1 Score: 724 bits (1870), Expect = 5.290e-233 Identity = 454/906 (50.11%), Postives = 558/906 (61.59%), Query Frame = 1
Query: 1 VDFASTFLNTPGEFVSIWSEVTTLTWSEVQSATAVFSTMGGILALAIFGAGLGWRFDRKDRGLPFGVKAWCNSTVVLCLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSPRVVSAA---KRGMTHDENLKELTAAVTKKKKHEIDTTTPHHLGDRRLKRNLKLLIMIHHDFVAVFYCYYQWFTRPQRVALLLCSVVTLMAADATVFSTILFQDDGTCGAMLNEADCAAAATDSVNVGGVGVSCGWDEGSRTCHQPEPEDDLETSLIVSTISLILALPFELLIIAVFAAFIVRPTLSSRGGTGARDESACELVRNVTVVDGTVATERLSKPPIQYHVFPLLLRTLRQARLAEEVELTRTAQSEDKGKLSRVCRVLCW-CRPCSGDAAREARLVRRVKKEIRPAIELEKRMAKSTDAQTQEAMLFERAEADSLTHLERAVFFKSRILNYGEEDAISPISAWAKYLAWLFIVTYAVGMAFYVCLFAVKAGKATSIQWMISFWVAFAEDILVLTPLKLAFIYLFLPSLMRHRMRPDMFTRIPRQAPSVQIARRRPDLQVSGLILRGRIPVGSEFEDFIPLFNPERRWLACVTALVFTALAMVMVLPDSLQAMVVDTVLAVVVGGGIVGLGRLFPLSRLGFLGFCGGVVLVLLIYWILHMRAVKKETEIRRARKVRDTLGFAGMDNSAFSGYN-LARDSL---ETPNSNAPSPRADRPLPDTSGTLAAERAAMPSLGRYNSPGVGTYAGTGALAQWVASIRPGSVPP---ESGVESHPN----RVGG-DAVGSIEDTPADGSRWQKHGRGHFCADSCAASDWGEVHVSEVDLSANED-----DSSTTGDGSSSKEGAGSEASWTGGRGYGPGSEWNGLNATHGSRYTRDFNSTVASSTFFGAGSPSHRA 2655
VDFASTFL+T GEF+SIW E TTLTW+EVQSA +F+TMGGILALA+ AG GWR D+KDRG P G AW S TV+ R S KRGMT DE LK L AAV K ++D T PHHLG+RR++++LKLLIM+HHDFV+VFYCYY+WFTRPQRVALLLCSVVTLMA +ATVF++I+F+DDGTCGA N ADCAA++T +VNVGGVG SC WDEGSRTC+ PEPE+D+ETSL++STISLILALP EL ++AVFAAF+VRPT + G G D E R +G ++ HV + ARL EV+L R A+ +GK++R R LC C C A REARL ++VK+ + PAI LEKR+A++ D ++EA+LFE+AEADSLT+LER VFF SRIL YG+ED++S + K LAWLFIV YAVG++FYVCLFAVKAG+ATS+QWMISFWVAF EDI +L PLKLAF+YLFLPSLMRHRMR DMF RIPR A SVQ+ARR P+++VSG+IL+GRIP G+EFE FIPLF RW C+T LVFT LA++M+LPD+LQAM +KKE ++R+AR T G N FSG N LAR TPN N PSP + + A A S SP + T +LA+WV++++PGSV P + ES P R G ++V SI GSRW HGR DSCAAS WGEVHVS+V+ S NED D S+ G G S SW + +EW+GL T + D +T +S+ F G PSHRA
Sbjct: 1314 VDFASTFLDTAGEFISIWDEATTLTWTEVQSAAPIFATMGGILALAVISAGFGWRLDQKDRGRPAGCGAWLASLAC------------------WSKAPPSTTDNQGKTVNERRASTLHVPKRGMTRDECLKSLAAAVQGDNKDDVDATAPHHLGERRVRKSLKLLIMVHHDFVSVFYCYYEWFTRPQRVALLLCSVVTLMATEATVFASIMFKDDGTCGAFENLADCAASSTANVNVGGVGSSCAWDEGSRTCYLPEPEEDMETSLVISTISLILALPLELFLVAVFAAFLVRPTKTKGGRAGTGD---MEAERGGKAPNGKSGGSAIASSKTVDHVEKDATGDFK-ARLTIEVDLARAAEHRREGKVTRFWRSLCCGCGFCGDGAKREARLEKKVKRSLGPAISLEKRIAQTGDVDSKEALLFEQAEADSLTYLERQVFFNSRILTYGDEDSLSGVPLCIKCLAWLFIVVYAVGLSFYVCLFAVKAGRATSVQWMISFWVAFFEDIFLLVPLKLAFVYLFLPSLMRHRMRSDMFKRIPRHATSVQVARRHPNMEVSGMILQGRIPHGNEFEKFIPLFTARSRWYTCMTGLVFTVLAIIMLLPDTLQAM-------------------------------------------------IKKEKKLRKARV---TQGAYSTGNGMFSGVNVLARGRTAGGRTPNFNTPSPGLN---------IVAGDAGFES--DQQSPTMNTV----SLARWVSAVKPGSVQPPQVDQQTESPPRPPRARHGRTNSVASIGMISEAGSRWDNHGR----LDSCAASAWGEVHVSDVESSVNEDGGNGDDESSAGTGPRFHGRDHSGRSWNLEQ-----NEWDGLGNTLSLENSVDLGTTASSTFFDDLGEPSHRA 2121
BLAST of mRNA_S-dermatodea_contig112.775.1 vs. uniprot
Match: A0A6H5JDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC0_9PHAE) HSP 1 Score: 633 bits (1632), Expect = 1.480e-199 Identity = 416/911 (45.66%), Postives = 517/911 (56.75%), Query Frame = 1
Query: 1 VDFASTFLNTPGEFVSIWSEVTTLTWSEVQSATAVFSTMGGILALAIFGAGLGWRFDRKDRGLPFGVKAWCNSTVVLCLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSPRVVSAA---KRGMTHDENLKELTAAVTKKKKHEIDTTTPHHLGDRRLKRNLKLLIMIHHDFVAVFYCYYQWFTRPQRVALLLCSVVTLMAADATVFSTILFQDDGTCGAMLNEADCAAAATDSVNVGGVGVSCGWDEGSRTCHQPEPEDDLETSLIVSTISLILALPFELLIIAVFAAFIVRPTLSS--RGGTGARDESACELVRNVTVVDGTVATERLSKPPIQYHVFPLLLRTLRQARLAEEVELTRTAQSEDKGKLSRVCRVLCW-CRPCSGDAAREARLVRRVKKEIRPAIELEKRMAKSTDAQTQEAMLFERAEADSLTHLERAVFFKSRILNYGEEDAISPISAWAKYLAWLFIVTYAVGMAFYVCLFAVKAGKATSIQWMISFWVAFAEDILVLTPLKLAFIYLFLPSLMRHRMRPDMFTRIPRQAPSVQIARRRPDLQVSGLILRGRIPVGSEFEDFIPLFNPERRWLACVTALVFTALAMVMVLPDSLQAMVVDTVLAVVVGGGIVGLGRLFPLSRLGFLGFCGGVVLVLLIYWILHMRAVKKETEIRRARKVRDTLGFAGMDNSAFSGYN-LARDSL---ETPNSNAPSPRADRPLPDTSGTLAAERAAMPSLGRYNSPGVGTYAGTGALAQWVASIRPGSV-----------PPESGVESHPNRVGGDAVGSIEDTPADGSRWQKHGRGHFCADSCAASDWGEVHVSEVDLSANE-----DDSSTTGDGSSSKEGAGSEASWTGGRGYGPGSEWNGLNATHGSRYTRDFNSTVASSTFFGAGSPSHRA 2655
VDFASTFL+T GEF+SIW E TTLTW+EVQSA +F+TMGGILALA+ AG GWR D+KDRG P G AW S ++ R S KRGMT DE LK L AAV K +D T PHHLG+RR++++LKLLIMIHHDFV+VFYC+Y+WFTRPQRVALLLCSVVTLMA +ATVF++I+F+DDGTCGA N ADCAA++T +VNV GVG SC WDEGSRTC+ PEPE+D+ETSL++STISLILALP EL ++AVFAAF+VRPT ++ R GTG + EL + V TL ARL EV+L R A+ +GK++R R LC C C A REARL ++VK+ + AI LEK++A++ D ++EA+LFE+AEADSL +LER VFF SRILNYGEED+ S + K LAWLFIV YAVG++FYVCLFAVKAG+ATS+QWMISFWVAFAE +ARR P+++VSGLIL+GRIP G+EFE FIPLF RW C+T LVFT LA++M+LPD+LQAM +KKE ++R+AR T G N FSG N LAR TPN N PSP + + A A S R SP + T +LA+WV++++PGSV PP +H ++G I + GSRW HGR DSCAAS WGEVHVS+V+ S NE DD S+ G G S SW + +EW+GL T + + D +T + + F G PSHRA
Sbjct: 1292 VDFASTFLDTAGEFISIWDEATTLTWTEVQSAAPIFATMGGILALAVISAGFGWRLDQKDRGRPAGCGAWLASLAC------------------WSKAPPPTTDNQGKALNERRASTLRVPKRGMTRDECLKSLAAAVRGDNKDNVDATAPHHLGERRVRKSLKLLIMIHHDFVSVFYCFYEWFTRPQRVALLLCSVVTLMATEATVFASIMFKDDGTCGAFENLADCAASSTANVNVAGVGSSCAWDEGSRTCYLPEPEEDMETSLVISTISLILALPLELFLVAVFAAFLVRPTKTNGDRAGTGDMEAERWELREELVAV------------------------TLLGARLTIEVDLARAAEHRREGKMTRFWRSLCCGCGFCGDGAKREARLQKKVKRSLGAAITLEKKIAQTGDVDSKEALLFEQAEADSLNYLERQVFFNSRILNYGEEDSQSGVPLCIKCLAWLFIVMYAVGLSFYVCLFAVKAGRATSVQWMISFWVAFAE-----------------------------------------VARRHPNMEVSGLILQGRIPNGNEFEKFIPLFTARSRWYTCMTGLVFTVLAIIMLLPDTLQAM-------------------------------------------------MKKEKKLRKARV---TQGGYSSGNGTFSGVNVLARGRTAGGRTPNFNTPSPGLN---------IVAGNAGFQSDQR--SPTMNTA----SLARWVSAVKPGSVQRPQVDQQTKSPPRPPRANHGRTNSLASIGMISEA---GSRWDHHGR----LDSCAASAWGEVHVSDVESSVNEGGGNGDDESSVGTGPRLHGRDHSGGSWNLQQ-----NEWDGLGNTLSLQNSVDLGTTASFTFFDDLGDPSHRA 2040 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig112.775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig112.775.1 >prot_S-dermatodea_contig112.775.1 ID=prot_S-dermatodea_contig112.775.1|Name=mRNA_S-dermatodea_contig112.775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=885bp VDFASTFLNTPGEFVSIWSEVTTLTWSEVQSATAVFSTMGGILALAIFGAback to top mRNA from alignment at S-dermatodea_contig112:5874..12558- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig112.775.1 ID=mRNA_S-dermatodea_contig112.775.1|Name=mRNA_S-dermatodea_contig112.775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6685bp|location=Sequence derived from alignment at S-dermatodea_contig112:5874..12558- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig112:5874..12558- >mRNA_S-dermatodea_contig112.775.1 ID=mRNA_S-dermatodea_contig112.775.1|Name=mRNA_S-dermatodea_contig112.775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=5310bp|location=Sequence derived from alignment at S-dermatodea_contig112:5874..12558- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |