prot_S-dermatodea_contig11188.765.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11188.765.1
Unique Nameprot_S-dermatodea_contig11188.765.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length100
Homology
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: D7FWW1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW1_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.160e-29
Identity = 57/101 (56.44%), Postives = 76/101 (75.25%), Query Frame = 0
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVLDLDETC-LGAAQKDR 100
            +RTSL V NGV + +KGT+  GDCDELKI SS T I+ +  HGGN+DIYKT IQSW+E     H L+ +STGD+PRSYI+C SEV++ ++TC  G A++D+
Sbjct:  130 VRTSLAVSNGVTMNLKGTSVGGDCDELKIRSSTTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDSTGDEPRSYIACTSEVVNENDTCDSGYAREDK 230          
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: A0A6H5JNF4_9PHAE (MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.910e-29
Identity = 57/101 (56.44%), Postives = 76/101 (75.25%), Query Frame = 0
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVLDLDETC-LGAAQKDR 100
            +RTSL V NGV + +KGT+  GDCDELKI SS T I+ +  HGGN+DIYKT IQSW+E     H L+ +STGD+PRSYI+C SEV++ ++TC  G A++D+
Sbjct:  195 VRTSLAVSNGVTMNLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDSTGDEPRSYIACSSEVVNENDTCDSGYAREDK 295          
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: D7G261_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G261_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.710e-17
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 0
Query:    1 LRTSLTVINGVILEIKGTAASG-DCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNST-GDQPRSYISCVSEVLDLDETCLGAAQKDR 100
            LRTS+ V NGV+ E+ GT A G D D++ + SS T    I   GG++  Y+T++ SW E   APH L  ++  G +PRSYI C+SE+L+  +TC G A+K+R
Sbjct:  307 LRTSVDVTNGVMFEVMGTQAEGGDSDKILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHTLPDDAEWGAEPRSYIGCLSEILEEGQTCDGVAKKER 408          
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: A0A6H5J745_9PHAE (MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.430e-17
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 0
Query:    1 LRTSLTVINGVILEIKGTAASG-DCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNST-GDQPRSYISCVSEVLDLDETCLGAAQKDR 100
            LRTS+ V NGV+ E+ GT A G D D++ + SS T    I   GG++  Y+T++ SW E   APH L  ++  G +PRSYI C+SE+L+  +TC G A+K+R
Sbjct:  503 LRTSVDVTNGVMFEVMGTEAEGGDSDKILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHMLPDDAEWGAEPRSYIGCLSEILEEGQTCDGVAKKER 604          
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 9.120e-13
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 0
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVL-DLDETCLGAAQ 97
            L   L V +G+ LE+ G+ A GD DEL++LS+      + AHGG++D   TK+ SW+ +  +P    T+      RSYIS +SE++ D DETC G A+
Sbjct:  105 LTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDG-----RSYISAISEIITDEDETCEGNAK 197          
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.010e-10
Identity = 36/99 (36.36%), Postives = 59/99 (59.60%), Query Frame = 0
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVL-DLDETCLGAAQK 98
            L   L V +G+ L++ GT+A G+ +EL++LS++     + AHGG++D   TK+ +W+ +          + G + RSYIS VSE++ D  E C G A+K
Sbjct:  105 LTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKN-----KVRTDGSKARSYISAVSEIITDSKEKCDGKAKK 198          
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: A0A6H5KBD3_9PHAE (MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.310e-9
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVL-DLDETCLGAAQKD 99
            L +SL +  G  L ++G +  GDCD L + SS      + AHGG + +  T ++SW+ A G     + +   +  RSY+S +SEV+ D  ETC G A+ D
Sbjct:   81 LESSLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINVRAHGGELMLDGTHVESWDLAAG-----TVDENNEDGRSYLSAISEVITDPTETCDGTAKND 175          
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 6.260e-9
Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVL-DLDETCLGAAQKD 99
            L ++L +  G  L ++G +  GDCD L + SS      + AHGG + +  T ++SW+ A G     + +   +  RSY+S +SEV+ D  ETC G A+ D
Sbjct:  121 LESTLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINLRAHGGELMLDGTHVESWDLAAG-----TVDENNEDGRSYLSAISEVITDPAETCDGTAKND 215          
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.530e-5
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 0
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSE 84
            L  +L V++G  L + GTAASGD D L++LS++     +  +GGN+    T + SW+   G          GD  RS+I+CV++
Sbjct:  234 LDRNLRVVDGSTLLVHGTAASGDADVLRLLSTSDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWD----GDG-RSFINCVTQ 312          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FWW1_ECTSI2.160e-2956.44Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF4_9PHAE3.910e-2956.44MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G261_ECTSI6.710e-1745.10Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5J745_9PHAE9.430e-1745.10MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
D7FXE5_ECTSI9.120e-1340.82Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAK2_9PHAE2.010e-1036.36Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
A0A6H5KBD3_9PHAE1.310e-936.00MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FZF8_ECTSI6.260e-935.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI1.530e-535.71Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..90
e-value: 4.2E-13
score: 50.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11188contigS-dermatodea_contig11188:477..2183 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11188.765.1mRNA_S-dermatodea_contig11188.765.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11188 476..2183 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11188.765.1 ID=prot_S-dermatodea_contig11188.765.1|Name=mRNA_S-dermatodea_contig11188.765.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYK
TKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVLDLDETCLGAAQKDR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold