mRNA_S-dermatodea_contig11188.765.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11188.765.1
Unique NamemRNA_S-dermatodea_contig11188.765.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: D7FWW1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW1_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.160e-29
Identity = 57/101 (56.44%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVLDLDETC-LGAAQKDR 300
            +RTSL V NGV + +KGT+  GDCDELKI SS T I+ +  HGGN+DIYKT IQSW+E     H L+ +STGD+PRSYI+C SEV++ ++TC  G A++D+
Sbjct:  130 VRTSLAVSNGVTMNLKGTSVGGDCDELKIRSSTTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDSTGDEPRSYIACTSEVVNENDTCDSGYAREDK 230
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BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: A0A6H5JNF4_9PHAE (MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.910e-29
Identity = 57/101 (56.44%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVLDLDETC-LGAAQKDR 300
            +RTSL V NGV + +KGT+  GDCDELKI SS T I+ +  HGGN+DIYKT IQSW+E     H L+ +STGD+PRSYI+C SEV++ ++TC  G A++D+
Sbjct:  195 VRTSLAVSNGVTMNLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDSTGDEPRSYIACSSEVVNENDTCDSGYAREDK 295
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BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: D7G261_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G261_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.710e-17
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:    1 LRTSLTVINGVILEIKGTAASG-DCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNST-GDQPRSYISCVSEVLDLDETCLGAAQKDR 300
            LRTS+ V NGV+ E+ GT A G D D++ + SS T    I   GG++  Y+T++ SW E   APH L  ++  G +PRSYI C+SE+L+  +TC G A+K+R
Sbjct:  307 LRTSVDVTNGVMFEVMGTQAEGGDSDKILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHTLPDDAEWGAEPRSYIGCLSEILEEGQTCDGVAKKER 408
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BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: A0A6H5J745_9PHAE (MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.430e-17
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:    1 LRTSLTVINGVILEIKGTAASG-DCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNST-GDQPRSYISCVSEVLDLDETCLGAAQKDR 300
            LRTS+ V NGV+ E+ GT A G D D++ + SS T    I   GG++  Y+T++ SW E   APH L  ++  G +PRSYI C+SE+L+  +TC G A+K+R
Sbjct:  503 LRTSVDVTNGVMFEVMGTEAEGGDSDKILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHMLPDDAEWGAEPRSYIGCLSEILEEGQTCDGVAKKER 604
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BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 9.120e-13
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVL-DLDETCLGAAQ 291
            L   L V +G+ LE+ G+ A GD DEL++LS+      + AHGG++D   TK+ SW+ +  +P    T+      RSYIS +SE++ D DETC G A+
Sbjct:  105 LTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDG-----RSYISAISEIITDEDETCEGNAK 197
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BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.010e-10
Identity = 36/99 (36.36%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVL-DLDETCLGAAQK 294
            L   L V +G+ L++ GT+A G+ +EL++LS++     + AHGG++D   TK+ +W+ +          + G + RSYIS VSE++ D  E C G A+K
Sbjct:  105 LTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKN-----KVRTDGSKARSYISAVSEIITDSKEKCDGKAKK 198
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BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: A0A6H5KBD3_9PHAE (MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.310e-9
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVL-DLDETCLGAAQKD 297
            L +SL +  G  L ++G +  GDCD L + SS      + AHGG + +  T ++SW+ A G     + +   +  RSY+S +SEV+ D  ETC G A+ D
Sbjct:   81 LESSLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINVRAHGGELMLDGTHVESWDLAAG-----TVDENNEDGRSYLSAISEVITDPTETCDGTAKND 175
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BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 6.260e-9
Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVL-DLDETCLGAAQKD 297
            L ++L +  G  L ++G +  GDCD L + SS      + AHGG + +  T ++SW+ A G     + +   +  RSY+S +SEV+ D  ETC G A+ D
Sbjct:  121 LESTLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINLRAHGGELMLDGTHVESWDLAAG-----TVDENNEDGRSYLSAISEVITDPAETCDGTAKND 215
[Close]
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.530e-5
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:    1 LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYKTKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSE 252
            L  +L V++G  L + GTAASGD D L++LS++     +  +GGN+    T + SW+   G          GD  RS+I+CV++
Sbjct:  234 LDRNLRVVDGSTLLVHGTAASGDADVLRLLSTSDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWD----GDG-RSFINCVTQ 312
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11188.765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FWW1_ECTSI2.160e-2956.44Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF4_9PHAE3.910e-2956.44MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G261_ECTSI6.710e-1745.10Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5J745_9PHAE9.430e-1745.10MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
D7FXE5_ECTSI9.120e-1340.82Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAK2_9PHAE2.010e-1036.36Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
A0A6H5KBD3_9PHAE1.310e-936.00MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FZF8_ECTSI6.260e-935.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI1.530e-535.71Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11188contigS-dermatodea_contig11188:476..2183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionMannuronan C-5-epimerase
Ec32 orthologEc-08_004820.1
Hectar predicted targeting categoryother localisation
Exons4
Model size301
Cds size300
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11188.765.1prot_S-dermatodea_contig11188.765.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11188 477..2183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.7266498-CDS-S-dermatodea_contig11188:476..5241622924190.7266498-CDS-S-dermatodea_contig11188:476..524Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 477..524 -
1694079080.5306723-CDS-S-dermatodea_contig11188:476..5241694079080.5306723-CDS-S-dermatodea_contig11188:476..524Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 477..524 -
1622924190.73662-CDS-S-dermatodea_contig11188:867..9631622924190.73662-CDS-S-dermatodea_contig11188:867..963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 868..963 -
1694079080.539718-CDS-S-dermatodea_contig11188:867..9631694079080.539718-CDS-S-dermatodea_contig11188:867..963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 868..963 -
1622924190.7470293-CDS-S-dermatodea_contig11188:1551..16291622924190.7470293-CDS-S-dermatodea_contig11188:1551..1629Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 1552..1629 -
1694079080.5484188-CDS-S-dermatodea_contig11188:1551..16291694079080.5484188-CDS-S-dermatodea_contig11188:1551..1629Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 1552..1629 -
1622924190.7569513-CDS-S-dermatodea_contig11188:2105..21831622924190.7569513-CDS-S-dermatodea_contig11188:2105..2183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 2106..2183 -
1694079080.557274-CDS-S-dermatodea_contig11188:2105..21831694079080.557274-CDS-S-dermatodea_contig11188:2105..2183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 2106..2183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11188.765.1

>prot_S-dermatodea_contig11188.765.1 ID=prot_S-dermatodea_contig11188.765.1|Name=mRNA_S-dermatodea_contig11188.765.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
LRTSLTVINGVILEIKGTAASGDCDELKILSSATAINPIVAHGGNIDIYK
TKIQSWNEAFGAPHALSTNSTGDQPRSYISCVSEVLDLDETCLGAAQKDR
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mRNA from alignment at S-dermatodea_contig11188:476..2183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11188.765.1 ID=mRNA_S-dermatodea_contig11188.765.1|Name=mRNA_S-dermatodea_contig11188.765.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1708bp|location=Sequence derived from alignment at S-dermatodea_contig11188:476..2183- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCGGACGTCGTTGACCGTTATCAACGGGGTTATCCTCGAGATCAAGGG
CACGGCCGCAAGCGGCGATTGCGATGAGGTATCGCACGTTTTCGCGCGTC
CCCTAAATTTCCCTTTTTGCTGTTTTCTATGCTGTAGCTTTCCCTCCCGA
CGAACGCTTGTATTTAGTTTAGGGCGGTGGTTTTATTCATGCGTAATATA
TAATTTGCCAAAGCTTTGTACATGGTCGCCGACAGACTCGAGGCGAGTTG
ACTTGTTTTTTCTTTCTTTTTGCACAATCAGTCGATCAATATCGATGGGT
GATCCCCACCCGCTGTGCGTTTTTTCTACACTCCGTCTCGGCTCCGTTTT
TTTACCTCGCCTTCTGCTTCTTTCTTCTCAGAGAGTCGTTGATTTACCAC
GTTTTACGTTATTTTTTTCGGGGTTCGAGACGTCGGGACAATCGACCGGC
ATCGACGCCGTGAAGATGCAACTCCTTTCTCGCTATGCATAGGATACATA
TCTCCACCCTTGCCCTAACCCCCTGGCAAACCACCAAATTTCTTTCGCTC
GCAGTTGAAGATCCTTAGCTCGGCCACAGCGATAAACCCGATTGTTGCCC
ACGGGGGCAACATCGACATCTACAAGACTAAGGTGCGAGCGTTGGAAAGC
GGGTGTCTCTTAATCGCGGAGCTGCATGCGGTTGTGTGTGTGTTGTGATG
GGAATCAACGGCGACCCTTGATGCAGCAGTGTGTGTACAGTAGCTGTTGG
GGCGCTGCGCGGTTAGCCTAGCGTAGGACGTACGGCGGATCGAGTGCCCG
ACCGACTGCTGTCACCAGCACAAAAAACACATGCACACAAAACGCAGCCC
GACGAGTTACCCGAACAATGTGAGTTTTGATTTTGCCGTGCCAAGTAATA
CTTGGAAACTCATGGCTAGGATGCACCGTCATGATGATTCTTGTACAGCC
AGGTACAGCCAAGGCGAGTCGCACTGCGCGCACGTCTTCCCTAGGGGGGG
GGTAAACTCTCATCTGTCGAAAGTATCATGTATCGTGTCCGCGCATTACG
TGAATCGCTGGAAATACCTGGTTATATCGAATGTTCACCCAACCTGCTAT
CGTCGCCCTCCGGGACTATGTAGGCATATAGGTGGAGGCTCTACTACACC
CCGTAATATTGTTTCGCCGTTTGCGTTGCGCGTGCGGGCGACTGTCTGGC
GAACGTTCCGTGGATTGCAGATTCAGAGCTGGAACGAGGCATTTGGTGCG
CCTCACGCGTTATCCACCAACAGCACAGGAGACCAGCCCCGCTCCTACAT
CTCCTGCGTTAGCGAGGTGCGCGCTATCCCTTTTAACCCGAAGACCTGAT
GGCCGTTGATGGCATGGCCGCCTACAGGATATATGGCGACGAGCCCCGCC
TCTCTGTCTTTACGCATAAGGGCGCCTACCGCTTTGCTTGCCAGCCTGCT
TGCTTGCCCACGTGCCTCATGCGTGTATGTGTGTGTGTGCGCGATGGTGC
TTTCAACCGGGAATGCAACCAAACGTTCGGTCTTTGCCGCATCGCCGCCT
TTACGCCTGGCATGAGGCATCATACTCTTAGCTGTTGCGGCAACCGCCTT
TCAGATCGAGGCACTTGTACCTCACTTGGAGGGTGGTGATGCTGGGCGTG
CTCTCGCAGGTGCTCGACCTGGACGAGACCTGTCTCGGAGCCGCGCAGAA
AGACAGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11188:476..2183-

>mRNA_S-dermatodea_contig11188.765.1 ID=mRNA_S-dermatodea_contig11188.765.1|Name=mRNA_S-dermatodea_contig11188.765.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig11188:476..2183- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCGGACGTCGTTGACCGTTATCAACGGGGTTATCCTCGAGATCAAGGG
CACGGCCGCAAGCGGCGATTGCGATGAGCTGCGGACGTCGTTGACCGTTA
TCAACGGGGTTATCCTCGAGATCAAGGGCACGGCCGCAAGCGGCGATTGC
GATGAGTTGAAGATCCTTAGCTCGGCCACAGCGATAAACCCGATTGTTGC
CCACGGGGGCAACATCGACATCTACAAGACTAAGTTGAAGATCCTTAGCT
CGGCCACAGCGATAAACCCGATTGTTGCCCACGGGGGCAACATCGACATC
TACAAGACTAAGATTCAGAGCTGGAACGAGGCATTTGGTGCGCCTCACGC
GTTATCCACCAACAGCACAGGAGACCAGCCCCGCTCCTACATCTCCTGCG
TTAGCGAGATTCAGAGCTGGAACGAGGCATTTGGTGCGCCTCACGCGTTA
TCCACCAACAGCACAGGAGACCAGCCCCGCTCCTACATCTCCTGCGTTAG
CGAGGTGCTCGACCTGGACGAGACCTGTCTCGGAGCCGCGCAGAAAGACA
GAGTGCTCGACCTGGACGAGACCTGTCTCGGAGCCGCGCAGAAAGACAGA
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