mRNA_S-dermatodea_contig11181.760.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11181.760.1
Unique NamemRNA_S-dermatodea_contig11181.760.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Match: D7FPW5_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPW5_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 5.390e-53
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  142 MSMEVDESGVEGAAGPGLPADFKANYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 417
            MSM+ +++GVEGAAGPGLPADFK  YELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDD+DVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE
Sbjct:  547 MSMQAEDAGVEGAAGPGLPADFKGTYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 638
[Close]
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Match: A0A7S3XWY9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWY9_HETAK)

HSP 1 Score: 148 bits (373), Expect = 3.260e-41
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:  172 EGAAGPGLPADFKANYELFAVVTHKGREADGGHYMGWVRQEG------DDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 414
            EGAAGPGLP DF+ NYELF VVTHKGREADGGHYMGWV+QEG      D W VFDDADVS    E++M LKGGGDWHMAYLTFYR+K
Sbjct:   66 EGAAGPGLPGDFRGNYELFGVVTHKGREADGGHYMGWVKQEGGRGDPSDKWFVFDDADVSETTEEEVMKLKGGGDWHMAYLTFYRYK 152
[Close]
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Match: A0A7S2DH50_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH50_9STRA)

HSP 1 Score: 146 bits (369), Expect = 4.560e-39
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:  184 GPGLPADFKANYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 414
            G GL  DF+ NYELFA+VTHKGR ADGGHY+GWVRQEGDDWLVFDDADVSPCKTED++ LKGGGD+HMAYLTFYR K
Sbjct:  202 GYGLDPDFQGNYELFALVTHKGRLADGGHYIGWVRQEGDDWLVFDDADVSPCKTEDVLPLKGGGDYHMAYLTFYRSK 278
[Close]
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Match: A0A7S2DHH2_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHH2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 4.830e-37
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:  184 GPGLPADFKANYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 414
            G GL  DF+ NYELFA+VTHKGR ADGGHY+GWVRQEGDDWLVFDDADVSPCKTED++ LKGGGD+HMAYLTFYR K
Sbjct:  448 GYGLDPDFQGNYELFALVTHKGRLADGGHYIGWVRQEGDDWLVFDDADVSPCKTEDVLPLKGGGDYHMAYLTFYRSK 524
[Close]
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Match: W7TNR7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNR7_9STRA)

HSP 1 Score: 146 bits (369), Expect = 5.070e-37
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:  142 MSMEVDESGVEGAAGPGLPADFKANYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 414
            M+   D +      GPGLP DFK  YELF VVTHKGR ADGGHYMGWVRQ+GDDWLVFDD DVS CKT +++ L GGGDWHMAYL FYRFK
Sbjct:  422 MADSADAAVPPAPCGPGLPMDFKGLYELFGVVTHKGRTADGGHYMGWVRQKGDDWLVFDDEDVSECKTAEVLQLSGGGDWHMAYLCFYRFK 512
[Close]
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Match: A0A067D9U3_SAPPC (USP domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D9U3_SAPPC)

HSP 1 Score: 140 bits (354), Expect = 1.330e-36
Identity = 61/79 (77.22%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:  178 AAGPGLPADFKANYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 414
            +AG GLP DF+ NYELFAVVTHKGR AD GHY+GW R + DDWL FDD +VSPCKTEDI  LKGGGDWHMAYLTFYR K
Sbjct:  223 SAGIGLPLDFQGNYELFAVVTHKGRSADSGHYIGWARVKDDDWLCFDDDNVSPCKTEDIQKLKGGGDWHMAYLTFYRAK 301
[Close]
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Match: A0A3R6XNK4_9STRA (USP domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XNK4_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.990e-36
Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:  163 SGVEGAAGPGLPADFKANYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 414
            +G    AG GLP DF+ NYELFAVVTHKGR AD GHY+GW R   DDWL FDD +V+PCK+EDI  LKGGGDWHMAYLTFYR K
Sbjct:  168 TGGRATAGIGLPLDFQGNYELFAVVTHKGRSADSGHYIGWARVHDDDWLCFDDDNVTPCKSEDIQKLKGGGDWHMAYLTFYRAK 251
[Close]
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Match: H3GBF8_PHYRM (Ubiquitin carboxyl-terminal hydrolase n=23 Tax=Phytophthora TaxID=4783 RepID=H3GBF8_PHYRM)

HSP 1 Score: 144 bits (362), Expect = 3.670e-36
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:  175 GAAGPG--LPADFKANYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 414
            GA  PG  LP DF+ NYELFA++THKGR AD GHYM WVR EGDDW  +DD DVSPCKTEDIM LKGGGDWHMAYLTFYR K
Sbjct:  422 GAKSPGIDLPIDFQGNYELFAILTHKGRSADSGHYMAWVRHEGDDWYCYDDDDVSPCKTEDIMKLKGGGDWHMAYLTFYRAK 503
[Close]
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Match: A0A3M6VV79_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VV79_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.400e-35
Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:  175 GAAGPG--LPADFKANYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 417
            GA  PG  LP DF+ NYEL+A++THKGR AD GHYM WVR EGDDW  +DD DVSPCKTEDIM LKGGGDWHMAYL FYR K+
Sbjct:  415 GAKSPGIDLPVDFQGNYELYAILTHKGRSADSGHYMAWVRHEGDDWYCYDDDDVSPCKTEDIMKLKGGGDWHMAYLAFYRAKK 497
[Close]
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Match: A0A662Y598_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y598_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.120e-35
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:  175 GAAGPG--LPADFKANYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 414
            GA  PG  LP DF+ NYEL+A++THKGR AD GHYM WVR +GDDW  +DD DVSPCKTEDIM LKGGGDWHMAYL FYR K
Sbjct:  324 GAKSPGIELPIDFQGNYELYAILTHKGRSADSGHYMAWVRHKGDDWFCYDDDDVSPCKTEDIMKLKGGGDWHMAYLAFYRAK 405
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11181.760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPW5_ECTSI5.390e-5391.30Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A7S3XWY9_HETAK3.260e-4175.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DH50_9STRA4.560e-3983.12Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2DHH2_9STRA4.830e-3783.12Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dict... [more]
W7TNR7_9STRA5.070e-3770.33Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Mono... [more]
A0A067D9U3_SAPPC1.330e-3677.22USP domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A3R6XNK4_9STRA2.990e-3671.43USP domain-containing protein n=1 Tax=Aphanomyces ... [more]
H3GBF8_PHYRM3.670e-3676.83Ubiquitin carboxyl-terminal hydrolase n=23 Tax=Phy... [more]
A0A3M6VV79_9STRA2.400e-3573.49Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pero... [more]
A0A662Y598_9STRA3.120e-3573.17Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11181contigS-dermatodea_contig11181:112..3192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue6.5e-48
Seed eggNOG ortholog2880.D7FPW5
KEGG koko:K11843
EggNOG free text desc.negative regulation of ER-associated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG1872@1,KOG1872@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size800
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11181.760.1prot_S-dermatodea_contig11181.760.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11181 121..2812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.4907339-UTR-S-dermatodea_contig11181:111..1201622924190.4907339-UTR-S-dermatodea_contig11181:111..120Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11181 112..120 +
1694079080.3884282-UTR-S-dermatodea_contig11181:111..1201694079080.3884282-UTR-S-dermatodea_contig11181:111..120Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11181 112..120 +
1622924190.5389333-UTR-S-dermatodea_contig11181:2812..31921622924190.5389333-UTR-S-dermatodea_contig11181:2812..3192Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11181 2813..3192 +
1694079080.4313655-UTR-S-dermatodea_contig11181:2812..31921694079080.4313655-UTR-S-dermatodea_contig11181:2812..3192Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11181 2813..3192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.5021648-CDS-S-dermatodea_contig11181:120..2771622924190.5021648-CDS-S-dermatodea_contig11181:120..277Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11181 121..277 +
1694079080.403137-CDS-S-dermatodea_contig11181:120..2771694079080.403137-CDS-S-dermatodea_contig11181:120..277Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11181 121..277 +
1622924190.5151026-CDS-S-dermatodea_contig11181:1312..14111622924190.5151026-CDS-S-dermatodea_contig11181:1312..1411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11181 1313..1411 +
1694079080.4159527-CDS-S-dermatodea_contig11181:1312..14111694079080.4159527-CDS-S-dermatodea_contig11181:1312..1411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11181 1313..1411 +
1622924190.526569-CDS-S-dermatodea_contig11181:2657..28121622924190.526569-CDS-S-dermatodea_contig11181:2657..2812Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11181 2658..2812 +
1694079080.4237142-CDS-S-dermatodea_contig11181:2657..28121694079080.4237142-CDS-S-dermatodea_contig11181:2657..2812Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11181 2658..2812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11181.760.1

>prot_S-dermatodea_contig11181.760.1 ID=prot_S-dermatodea_contig11181.760.1|Name=mRNA_S-dermatodea_contig11181.760.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=137bp
MEVDSTAVAAAASAAAAAADTSAKVAAGAGGGDEDSDELKAALAMSMEVD
ESGVEGAAGPGLPADFKANYELFAVVTHKGREADGGHYMGWVRQEGDDWL
VFDDADVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE*
back to top

mRNA from alignment at S-dermatodea_contig11181:112..3192+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11181.760.1 ID=mRNA_S-dermatodea_contig11181.760.1|Name=mRNA_S-dermatodea_contig11181.760.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3081bp|location=Sequence derived from alignment at S-dermatodea_contig11181:112..3192+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTAAGGAGATGGAAGTCGATAGCACCGCGGTGGCGGCGGCGGCATCAGC
AGCAGCAGCAGCAGCGGACACGTCCGCTAAGGTAGCGGCCGGGGCGGGCG
GCGGGGATGAGGACAGCGACGAGCTCAAGGCCGCGCTGGCCATGTCGATG
GAAGTAGACGAATCGGGTGAGTACTTGTCGATTTTGCTTCTTCTAATTTT
TGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGCGTCCCCCTGTGTTTCGCG
GGTTGGTTGGTCCGCCNNNNNNNNNNGGGTGGGGGTGTGGGGGTGGATTG
GGGTGGGGGGAGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGTGGGGGGCGTACTCATGCTTTGCATGGCTTGGCTGTTAGACCGTTGAC
CACACGTCTGTCCTCGAGGGCGGAGCATTGTTCCCACAGGATCGATCGAT
CGCCGATGGGCAGTCTTTCCTTCCTACTCTGCCAAAGGTGGCGGAAACGT
TTTTGTCCTATCCTGTCTACTTACTGCTGTACATCGCCTTCTCAGGCCAC
TTCTTATCCCCCAGTATGATATAGCGGGGGAGAGGCGCTGGGCGGTTATA
TTTGCACACTGTGTAGGCATGGCTTCTTCACTTTTGTTTTGTTAAATCAT
AGGCGGGAGCTCGGTTTGTTTTCGCAAAATATTGTTATTTTTGCTACGCA
GCTTTTTTCATACACACATGTGCTATGTGCTTGTACTGATGGATTATGGC
TGTATAAATACGTACATTTGTTCGTCGTTGATGCGTTGTGTTTGTGCTTA
TGTGTTATATGGTACTCGAAAGTGTTTCGGTGTTGTGTACCTGGTACATG
TGTATTAATCATATCATACTCTTCGAAAATAACTTTTTATAATATTGGTA
GTGTGTTTTACTCAATCGAAAGCCTTTTTTGGTGTGTGGTAGTGTATATG
CACATGTTGTACTCACTCGAAAAGCCTTTCGTAATACTGGTGGAATAGTG
TGTTTCATTTGTTTTTCTCAAATCGAAAGCATTTTGGCGAATTGATAGCA
TTTGTGTATGGTACATTTTACAGGTTACTCACTCACTCGAGAAGAGCCTC
TTATTTAGCATTAGCTCTATTTATAGCTCTACCAAGTACGTAGTGTTTTA
TTATTATTAATAATAAAATCGAAAGCCTTTTGGTGGGTTTGTTCCCGGCA
GGTGTAGAGGGAGCCGCCGGGCCGGGTCTGCCGGCCGATTTCAAGGCAAA
CTACGAGCTGTTCGCCGTAGTGACGCACAAGGGACGCGAGGCCGACGGAG
GTGAGCTCATCGACAAAGTTCGGGCTGCCGCGAGAGAGGGAGCCGGCCGA
GAACACTATACTATACTATTAATAGCACTATAATAGCACTACAAGTATAT
TTCCCTTACAGCCTAGTGAATGTGCAACACTTGCTGTTATTGCCGCGTAT
ATGTCCACTCAACCCATGGCACATCGGTTGGCGTCGCAAACGCAGGGATG
ATGGCTACGAGTAGCAGCTGGTATGTAAATGATCCTTATGAAACGCAGCC
TGGCCTGGCCTGGCCAGCGAAAACCCGGCATATCGCCCCGTCCCGGCATT
GTTGGGACACGCGGTCTATGTCCCTTCTAAATACCGCGTGCGTTTAACAC
AAGTACCCCTAAAAAAGTAGAGATTTCAAAAACGTTGAGCGAGCGTTGGG
GTCCCACCTTTTCAAGAGGGAAGATGGTCGAAGCTGTTAAAACACACCTA
CGGAGGCTCACTATAATCGTTGCGTATGATGTCATGGCGCAAGTGTCTTT
ATCCTGAGCAATAACCAGGTTACCATTAATAGACTATGACACGTCAGGTC
TCTGGACTATAACTATGACAGTGACGCACGTCCATGGCCATCGGAGGGAG
ATAAGTAGGCGTTCGTCCGTCACCTGCACTGCCCCATGCTTCAGGCCAGC
CTGTGTCTTGGATCAGGGCCAGTGATATAAATAGTATCCCCCGTTGGCGT
TGCTCACACAACAGAGAGATTACACTCAAATTATTAAATAGTACTGTACA
GAACAAAGAGTGTAATAGAACAACAATTATATTCCAAAGGCGGAGATTTG
TAGTGTACTGTTGTGTTTTCATGAAGTGTATTACGTGGTATTTTGGGGTA
TGATAGGGGTACAGTATGTACATCAGGCACGCAGCCTACCCGTGTATATT
TTTAAACTGGTATATACAATCACTGCTTGTACCTACACGCGTTGAAACCA
GTACGACCAGGTACAACCAGAGAGTATACTCACTGTACACTCGTAAAAGT
ACACTCGTAAAAGTACACTCGTAAAAGTACACGGGTTGGTTACACACGCG
TACAGTATAAATAAACACTTGTAGTAAACTGCAATTCAGATCTCCTCCGG
GGCCTTTTTGTACAAGATTCCACATTCAATATTCAACATTCCACGTTCAA
CATTCCACATTCCACATTCCACATTCATATCTCCCGCCTTCAACCTCTCT
CTCGCATCGTCCGTCTCGGGCTCTTTGGAAACACATCATGCATTAGGGCA
CTACATGGGCTGGGTCCGGCAAGAAGGGGACGACTGGCTAGTCTTCGATG
ACGCGGACGTGTCTCCCTGCAAGACAGAGGACATCATGAACCTTAAAGGC
GGAGGAGACTGGCACATGGCCTACCTCACCTTCTATCGGTTCAAGGAATA
GGGGAAGACAAAAAAAACTGCGCGTGCGTGCGTGCACGCGGTCGTGCTCG
TGGTGGCGCAAATGTTTTTTTTGAAAAAATGATAAAAAAAACGCTAGTTG
TTGTACTGGTGTTGTTGTATACCTCTTATCTTATCATACCGCTCTCATGA
CGCGTTCGTTTTTGGAAGGAAGGAAGAAAAGGAAGGAAAGGTCGTGGTCG
CGAACGTTGAAAAGTAGAGAAAAGAGCATACGCTCTCTTTTTATTTTTAT
TTTTATTTTTGTTTTTGTTTTTTGTTTTCGTTATATTTTTCTTCTTCCTG
CTTTTTGGAGTTTTGGGGGGGAGGAGAAAAATATGGTGTGGTGTGGTGTG
GTGTGGTGTGGCCGCCGCCGCCGCCACCGCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11181:112..3192+

>mRNA_S-dermatodea_contig11181.760.1 ID=mRNA_S-dermatodea_contig11181.760.1|Name=mRNA_S-dermatodea_contig11181.760.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at S-dermatodea_contig11181:112..3192+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGTCGATAGCACCGCGGTGGCGGCGGCGGCATCAGCAGCAGCAGC
AGCAGCGGACACGTCCGCTAAGGTAGCGGCCGGGGCGGGCGGCGGGGATG
AGGACAGCGACGAGCTCAAGGCCGCGCTGGCCATGTCGATGGAAGTAGAC
GAATCGGATGGAAGTCGATAGCACCGCGGTGGCGGCGGCGGCATCAGCAG
CAGCAGCAGCAGCGGACACGTCCGCTAAGGTAGCGGCCGGGGCGGGCGGC
GGGGATGAGGACAGCGACGAGCTCAAGGCCGCGCTGGCCATGTCGATGGA
AGTAGACGAATCGGGTGTAGAGGGAGCCGCCGGGCCGGGTCTGCCGGCCG
ATTTCAAGGCAAACTACGAGCTGTTCGCCGTAGTGACGCACAAGGGACGC
GAGGCCGACGGAGGTGTAGAGGGAGCCGCCGGGCCGGGTCTGCCGGCCGA
TTTCAAGGCAAACTACGAGCTGTTCGCCGTAGTGACGCACAAGGGACGCG
AGGCCGACGGAGGGCACTACATGGGCTGGGTCCGGCAAGAAGGGGACGAC
TGGCTAGTCTTCGATGACGCGGACGTGTCTCCCTGCAAGACAGAGGACAT
CATGAACCTTAAAGGCGGAGGAGACTGGCACATGGCCTACCTCACCTTCT
ATCGGTTCAAGGAATAGGGCACTACATGGGCTGGGTCCGGCAAGAAGGGG
ACGACTGGCTAGTCTTCGATGACGCGGACGTGTCTCCCTGCAAGACAGAG
GACATCATGAACCTTAAAGGCGGAGGAGACTGGCACATGGCCTACCTCAC
CTTCTATCGGTTCAAGGAATAG
back to top