mRNA_S-dermatodea_contig11175.758.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11175.758.1
Unique NamemRNA_S-dermatodea_contig11175.758.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11175.758.1 vs. uniprot
Match: A0A6H5JNX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX3_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 5.940e-103
Identity = 312/679 (45.95%), Postives = 367/679 (54.05%), Query Frame = 1
Query:  271 MRRLGSRQSTRHQSIEDDLWGWFGDDRPLSEAGDHPVHHRSFSRVGDRADFAGASAXXXXXXXXXXXLRDAEVTVSTLALTERLAKLSAGRALLDRVRGDNQSLASVVSSAAQSAFAPASDEPGAXXXXXXXXXXSFSSEVPGESVAA--------GAAATEAPRTP-TRAVQFASDVPPA-------PAAEETEASXXXXXXXXXXXXXXXXXXGGGVA---EEEGVREAK----ASSVVAVG-----GGE---FRQAVVDTRAKLEGLQANIRRLVREGGGDEEKLEEARGRVAPLVARRTALASAAVPGAERMAVRLQEISKDRQSNHSNINAAMREVEQRARTAGGRVWALIRGRSRQIDSSSSSTPSSSDLESDQDDVVSARPHGVVDVGSTPLLPSNGDGAGDRPD----------TSAPEWVLSRPEF--MRHRGSFLDGDQLGPVRTGAAQPGLASALTELTDRAALTNGSSGSGNXXXXXXXDPSSENTSFGDLAGFVLGPGDEDRRETDDALAVLGVAMEHHSAALALLAGWMIGQRPAPVGADTPNTRGRGEGGGETYLPTSIAPPDNSAFAGTEPAGGGVMAPWLGGGRGEVG-GXAGSASGGDEDSVREMLELSRELDVLEGRVKRERYRAHRAADEEIHRTPGLYKEACALGNALILRGHDCLSQ 2175
            + R  S +++RH+S+EDDLWGWFGDDRP SE   H +        GD A+ A A               +A VTVSTLALTERLAKLSAGR LLDRVR D +SLASVV+SA  SAF                          GE VAA        GAA T   R P TRAV F +   P        P AE    +    XXXXXXXXXXXXXX   VA   +E G   A     A++  A G     GG+    RQ VV+ RA++EGLQ  IRRL R GGG+    EE R RVAPLV RR  LA AA   AERMA RLQEIS+ +QSNHSN+++AMREVE+RARTAGGRVWALIRG+SRQ          SSD                ++ G+                           +APEWVLSR E   MR RGSFLDGD++GPVR  AA        TE         G + + +              SF  LA      GD +RR+TD+A++ L  AME HSAAL+ LAGWM+   P        +     E G      T I P    A  G E A GG+ +P   G  G+ G   AGS+S  +ED VR MLELSRE DVLEGRVKRER++AHRAADEEIHRTP +Y+EACALGNALIL+GHD LSQ
Sbjct:  411 LSRRPSSRASRHESVEDDLWGWFGDDRPPSETALHAMAR------GDAAESAAAGGVGVNGSAA----ENAGVTVSTLALTERLAKLSAGRVLLDRVRADTRSLASVVTSAVHSAFL-------------------------GEGVAAAAAXXAMSGAAVTAEVRCPATRAVHFEAGCSPPGGRRRLRPGAEAVAEAKQTEXXXXXXXXXXXXXXXXXVASSVDENGSSGASGLGLAAAAEATGDDEKSGGQASGLRQRVVEARAEIEGLQREIRRLAR-GGGEGGHAEETRARVAPLVERRAVLAQAARADAERMAKRLQEISEAQQSNHSNVDSAMREVERRARTAGGRVWALIRGQSRQH---------SSDXXXXXXXXXXXXXXXXLNPGAXXXXXXXXXXXXXXXXXXXXXXXXXXAAAPEWVLSRLELTRMRRRGSFLDGDEVGPVRAAAA-------ATEAXXXXXXXXGEASTAD--------------SFAHLARLASEDGDGERRDTDEAVSGLRDAMEQHSAALSRLAGWMVNVAPXXXXXXXXS-----EAGLMAAAQTEIHP----AAVGVE-AHGGLPSPSYPGLSGDSGFEVAGSSS--EEDGVRAMLELSRESDVLEGRVKRERFKAHRAADEEIHRTPEMYREACALGNALILKGHDYLSQ 1011          
BLAST of mRNA_S-dermatodea_contig11175.758.1 vs. uniprot
Match: D8LAX6_ECTSI (Outermembrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX6_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 1.380e-99
Identity = 359/784 (45.79%), Postives = 410/784 (52.30%), Query Frame = 1
Query:    1 QTDVRVPRQGHAALCHHGKALVLGGVAEGTTFMNDCLVGAD-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWSESSHGNMRRLGSRQSTRHQSIEDDLWGWFGDDRPLSEAGDHPVHHRSFSRVGDRADFAGASAXXXXXXXXXXXLRDAEVTVSTLALTERLAKLSAGRALLDRVRGDNQSLASVVSSAAQSAFAPASDEPGAXXXXXXXXXXSFSSEVPGESVAA----------GAAATEAPRTP-TRAVQFASDVPPAPAAEETEASXXXXXXXXXXXXXXXXXXG--------GGVAEEEGVREAKASSVVAV----------GG--GEFRQAVVDTRAKLEGLQANIRRLVREGGGDEEKLEEARGRVAPLVARRTALASAAVPGAERMAVRLQEISKDRQSNHSNINAAMREVEQRARTAGGRVWALIRGRSRQIDSSSSSTPSSSDLESDQDDVVSARPHGVVDVGSTPLLPSNGDGAGDRPD------------------------TSAPEWVLSRPEF--MRHRGSFLDGDQLGPVRTGAAQPGLASALTELTDRAALTNGSSGSGNXXXXXXXDPSSENTSFGDLAGFVLGPGDEDRRETDDALAVLGVAMEHHSAALALLAGWMIGQRPAPVGADTPNTRGRGEGGGETYLPTSIAPPDNSAFAGTEPAGGGVMAPWLGGGRGEVG-GXAGSASGGDEDSVREMLELSRELDVLEGRVKRERYRAHRAADEEIHRTPGLYKEACALGNALILRGHDCLSQ 2175
            + DVRV RQ                V+EGT FMNDCL                XXXXXXXXXXXXXXXXXXXXXXXXXXXX          + R  S +++RHQS+EDDLWGWFGDDRP SE   H +        GD A+ A A               +A VTVSTLALTERLAKLSAGR LLDRVR D +SLASVV+SA  SAF                          GE VAA          G A T     P TRAV F +   P    +   +    XXXXXXXXXXXXXXX             +E G   A    + A           GG  G  RQ VV+ RA++EGLQ  IRRLVR GGG+    EE R RVAPLV RR  LA AA   AERMA RLQEIS+ +QSNHSN+++AMREVE+RARTAGGRVWALIRG+SRQ     SS                  P  V + G                                          +APEWVLSR E   MR RGSFLDGD++GPVR  AA                   G+     XXXXXXX  +S   SFG LA      GD DRR+TD+A++ L  AME HSAAL+ LAGWM    P       P       GG E  L  +    ++ A  G E A G + +P   G  GE G   AGS+S  +ED VR MLELSRE DVLE RVKRER++AHRAADEEIHRTP +Y+EACALGNALIL+GHD LSQ
Sbjct:  149 EEDVRVARQXXXXXXXXXXXXXXXXVSEGTEFMNDCLADTPGAILNNGTLVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRRPSSRASRHQSMEDDLWGWFGDDRPPSETALHAMAR------GDAAESAAAGGIGVNGSAA----ENAGVTVSTLALTERLAKLSAGRVLLDRVRADTRSLASVVTSAVHSAFL-------------------------GEGVAAAXXXXXXXVSGKAVTAQVSCPATRAVHFTAGCSPPGGRQRLRSGAEAXXXXXXXXXXXXXXXXXXXXXXXVASSVDENGSSGASGLGLAAAAESTGDDEKSGGQAGGLRQRVVEARAEIEGLQREIRRLVR-GGGEGGHAEETRARVAPLVERRAVLAPAARADAERMAKRLQEISEAQQSNHSNVDSAMREVERRARTAGGRVWALIRGQSRQH----SSXXXXXXXXXXXXXXXXLNP--VTEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAPEWVLSRLELTRMRRRGSFLDGDEVGPVRAAAA-------------------GAEXXXXXXXXXXXGEASTADSFGHLARLASVDGDGDRRDTDEAVSELRDAMEQHSAALSRLAGWMFNVAPXXXXXXLP------AGGSEAGLMAAAPMENHPAAVGVE-AHGDLPSPSCPGPSGESGFEVAGSSS--EEDGVRAMLELSRESDVLESRVKRERFKAHRAADEEIHRTPEMYREACALGNALILKGHDYLSQ 862          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11175.758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNX3_9PHAE5.940e-10345.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAX6_ECTSI1.380e-9945.79Outermembrane protein n=1 Tax=Ectocarpus siliculos... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11175contigS-dermatodea_contig11175:2702..7143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.4
Seed ortholog evalue4e-96
Seed eggNOG ortholog2880.D8LAX6
KEGG koko:K10592
KEGG Pathwayko04120,map04120
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016032,GO:0016567,GO:0016740,GO:0019058,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030163,GO:0030260,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046718,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051603,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0055085,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-27_006070.1
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size2175
Cds size2175
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11175.758.1prot_S-dermatodea_contig11175.758.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11175 2702..7143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.320166-CDS-S-dermatodea_contig11175:2701..28141622924190.320166-CDS-S-dermatodea_contig11175:2701..2814Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11175 2702..2814 +
1694079080.2841728-CDS-S-dermatodea_contig11175:2701..28141694079080.2841728-CDS-S-dermatodea_contig11175:2701..2814Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11175 2702..2814 +
1622924190.3327272-CDS-S-dermatodea_contig11175:2878..28891622924190.3327272-CDS-S-dermatodea_contig11175:2878..2889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11175 2879..2889 +
1694079080.2947283-CDS-S-dermatodea_contig11175:2878..28891694079080.2947283-CDS-S-dermatodea_contig11175:2878..2889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11175 2879..2889 +
1622924190.340334-CDS-S-dermatodea_contig11175:4009..50461622924190.340334-CDS-S-dermatodea_contig11175:4009..5046Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11175 4010..5046 +
1694079080.3063602-CDS-S-dermatodea_contig11175:4009..50461694079080.3063602-CDS-S-dermatodea_contig11175:4009..5046Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11175 4010..5046 +
1622924190.3499873-CDS-S-dermatodea_contig11175:6033..67791622924190.3499873-CDS-S-dermatodea_contig11175:6033..6779Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11175 6034..6779 +
1694079080.317087-CDS-S-dermatodea_contig11175:6033..67791694079080.317087-CDS-S-dermatodea_contig11175:6033..6779Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11175 6034..6779 +
1622924190.3606758-CDS-S-dermatodea_contig11175:6875..71431622924190.3606758-CDS-S-dermatodea_contig11175:6875..7143Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11175 6876..7143 +
1694079080.3251681-CDS-S-dermatodea_contig11175:6875..71431694079080.3251681-CDS-S-dermatodea_contig11175:6875..7143Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11175 6876..7143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11175.758.1

>prot_S-dermatodea_contig11175.758.1 ID=prot_S-dermatodea_contig11175.758.1|Name=mRNA_S-dermatodea_contig11175.758.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=725bp
QTDVRVPRQGHAALCHHGKALVLGGVAEGTTFMNDCLVGADPPPAAPAST
PTAAAMAAATDAPALLGGAPLTRAGGGGGGASWSESSHGNMRRLGSRQST
RHQSIEDDLWGWFGDDRPLSEAGDHPVHHRSFSRVGDRADFAGASAGAGA
SGGGGGGLRDAEVTVSTLALTERLAKLSAGRALLDRVRGDNQSLASVVSS
AAQSAFAPASDEPGAGGGGGGGGTTSFSSEVPGESVAAGAAATEAPRTPT
RAVQFASDVPPAPAAEETEASPAEVEAEVEVVVEVEVEVGGGVAEEEGVR
EAKASSVVAVGGGEFRQAVVDTRAKLEGLQANIRRLVREGGGDEEKLEEA
RGRVAPLVARRTALASAAVPGAERMAVRLQEISKDRQSNHSNINAAMREV
EQRARTAGGRVWALIRGRSRQIDSSSSSTPSSSDLESDQDDVVSARPHGV
VDVGSTPLLPSNGDGAGDRPDTSAPEWVLSRPEFMRHRGSFLDGDQLGPV
RTGAAQPGLASALTELTDRAALTNGSSGSGNGGGNRGGDPSSENTSFGDL
AGFVLGPGDEDRRETDDALAVLGVAMEHHSAALALLAGWMIGQRPAPVGA
DTPNTRGRGEGGGETYLPTSIAPPDNSAFAGTEPAGGGVMAPWLGGGRGE
VGGGAGSASGGDEDSVREMLELSRELDVLEGRVKRERYRAHRAADEEIHR
TPGLYKEACALGNALILRGHDCLSQ
back to top

mRNA from alignment at S-dermatodea_contig11175:2702..7143+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11175.758.1 ID=mRNA_S-dermatodea_contig11175.758.1|Name=mRNA_S-dermatodea_contig11175.758.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4442bp|location=Sequence derived from alignment at S-dermatodea_contig11175:2702..7143+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGACCGATGTACGGGTTCCTCGACAGGGCCACGCGGCGTTGTGCCACCA TGGAAAGGCGTTGGTGCTTGGCGGGGTGGCAGAAGGGACGACGTTCATGA ACGATTGCCTGGTGTGAGTGTGACGGAAGGGGGCGAACAGGCGCCGGCGT ACCCTAGTATTATAGTTCGCTGACGAGAGGTGCTGATCGTTTCAGAGGCA CGACGCGTGTTTTGGCGGCGTTGTAGAGTGTGGTGTTCGGGGGATGGTGC CGCTGAATACCGTGGGAAGGGCGGACTCGGTGCAACAGCGCCTCGTTTTA TTGGAAAGGCTATGCCTCGATGTTTTGGCGCCTGGCGTGCTGGTGACGTT AGCTTTCAGATCCGATGCCCGTGATGCTATCGGCTATTGATGTACTTAAG TATGCACGTGGCGGACGGCGATGTCGTGTTTTGAGTGAGTTTTTCAGTAC AAACCGCGTGCACACTTATTGCTTGTTTGTTCTCGGCTTGTTTGGTTTCG ATAATCGCGCATACAGTCGATTGTTTGCCTCTGAGTTCATTCTTATACTT CCGTTCGCGACCAGAGAGTAAATACGTCGAAGGCAAAAAGCGGCAAAGAC ATAATAGCATCAAGGCCTAATGAAGTAAGCACAAGCGACATTACACACTT GGACTTGCACAGCTTTGTGGTATATACCGCGAACCGAGAAAACTCATTCC CCGACGTCGCTGGTGCTACCAGGTGCTGCGCCCACCCTCGCTCATGCTCG CCTTTCTCCAGCATGACCCCCCTCCCCCGCCTTCCCCCCTTTTTAGTTAG AAATGACACGGTTCATATAAAACTCAAAACCTCCTTCTACAATGAAACGA TCCCAGCGTGCGTACCTGACCATAGTGAGAGCTACTTTTCGTAGAGCTAC AATAGGTATCCCCTCCCCCTCCCCCCCACCCCCCACACACAACCCCCCCA CCCCCCCCCCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GCCGCACCCCCCAACACCCCACACACNNNNNNNNNNAAAACGACCCCAGC TGGGTGTCCTGACAATATTGAGACCTACTTTCCGTAAACCACCAACAGGT ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAACGTCCACGA CACCCCTCTCTCCGCCAGCGGGCTTACCGCCGCCCAGTCGGCGGCAGAAG CTTCCCGTGTCCAGGGCCGCAACCTGCCCCCCGCAGGCCGCAGAGCACCG CCCTTGCCGACACCTCTAGAACCATCAACCCCGACTCCCGCAAACCTAGT AGTCGCAGCCCCTCCCGCCGCCCCTGCCTCCACTCCGACTGCCGCCGCCA TGGCAGCAGCAACCGACGCCCCCGCTCTCCTCGGGGGCGCGCCTCTGACA AGGGCGGGCGGTGGCGGCGGCGGTGCGTCGTGGTCGGAGTCGTCTCACGG GAACATGCGCCGGCTGGGAAGCCGCCAGTCCACCCGACACCAGTCTATCG AGGACGACCTGTGGGGGTGGTTCGGGGACGACCGGCCTCTGTCCGAGGCG GGCGACCACCCTGTCCATCACCGCTCGTTCTCGAGGGTCGGCGACCGCGC GGACTTCGCCGGAGCGTCTGCCGGCGCGGGGGCTAGCGGCGGCGGTGGCG GCGGTCTCCGGGACGCAGAGGTCACGGTTAGCACGCTGGCGCTGACCGAG CGCCTCGCCAAGTTATCCGCCGGCCGCGCGCTCTTGGACCGGGTTAGGGG GGACAACCAGTCCCTCGCCTCCGTCGTGTCCTCCGCCGCGCAAAGCGCGT TCGCGCCTGCGAGTGACGAGCCCGGCGCCGGCGGCGGCGGCGGCGGCGGC GGGACTACGTCCTTCTCCTCCGAGGTTCCAGGGGAGAGCGTTGCGGCCGG AGCGGCGGCCACCGAGGCGCCCCGCACCCCCACGCGCGCGGTCCAGTTCG CGTCCGATGTGCCACCGGCGCCAGCGGCGGAGGAGACCGAGGCGTCACCG GCGGAGGTGGAGGCGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGAGGT GGGGGGGGGTGTTGCCGAGGAGGAGGGGGTTCGAGAGGCGAAGGCGTCGT CGGTTGTGGCGGTTGGCGGGGGGGAGTTTCGGCAGGCGGTTGTGGATACC AGGGCCAAGCTTGAGGGTTTGCAGGCGAATATCAGGCGGCTGGTGCGGGA GGGCGGAGGTGATGAGGAGAAGCTCGAGGAGGCGAGGGGTCGAGTTGCGC CGCTGGTCGCTAGGCGGACGGCGCTGGCCTCCGCTGCGGTGCCTGGCGCA GAGAGGATGGCTGTGCGCCTGCAGGAGATCTCGAAGGATCGCCAGGTGAG GATACGGGAAAGTGTTGGGTGGGGTCTGGTCGTTTTTGTTTTTTTACAGT TGGTTGATTTGGTTTTTGCTTTGATTGGTTTGCGACTGTTACAAACGACC GACCCGCCAATGGTTGCCGATCCCCCCGCCCGTGGTCAGATGAAAAATCG AGATGTACTGTACGTAGAACATCAAAGGAAGAGACTACACAAAAAAAAAA CGCCTGGAATCAGAGGGGGGGGCATACGTTCCTCATAACTTGGGTCTGGT AAATAAGCGACAGAGAAAAAACAGTCCCCCCTAGAGGGCCCTTTTGTTGC TCGCTCGCGGCGTGCCGGGTTGTTTGGACATGTGCAGCAATCATGACAAG CGAGGTAGGTTTGGGTCTGGCTTGGTTTGGGCCACGCTGGACCAGAATGG CGGATAACTCAATCGTCCCGCCGTGGGGTGGGTAGCGCCGCTTTTTTCAG CACAGGGCGCAACCGCATCGTGCGTCCCCTCTGGGAGCTGTAGTGTATTT TACCGCTGGGGAGGCCCGGGTCGCAGCAGCGGTGACAGCCAGGCAGACAG GCGTGCGGTGACGGGGGACGGGAGGTTCCCAACGCCCACCAACCTTGAAT TTACCACGATAACTTAGCCGCTAAGAAGATTTCCGCCCCTCCCGTGTATA GAGCTTCATATCTGCGCGTACGCCTACGCAGCGATCTCCTTTTGTAACCA GGTTCACTCCTGCGTGGAAGACATACCAGGGCCTCTCGCGAACACCCCCC CCTCTCCACGCACTCAAACGCAAGGATGATGGGGTATGGTAGCAGTTGGT ATCACCCTTGTAAAACGCAGCGTGGCCGGCGAAAACCCGGCACATCGCTC CGCTCCGGCTTTGTAGGGATGCGAGGTCTATGGTCTAACGACTACGGCAT GCACGATCAATGAATGAGTACACCCCCCTCCACCCCCCCCGCACCTCGCG TTTCGGCTTCCGCTCCCGCTCCGCTCCGCCAGTCCAACCACTCCAACATC AACGCCGCCATGCGGGAGGTAGAGCAGCGCGCGCGTACCGCTGGCGGTCG CGTATGGGCGCTCATCCGCGGCCGCAGTCGTCAGATCGACTCCTCCTCCT CCTCCACCCCTTCCTCCTCCGACCTCGAGTCCGACCAAGACGACGTGGTT TCCGCGCGCCCACACGGCGTCGTCGACGTTGGCAGCACCCCGTTGTTACC CTCAAACGGCGACGGCGCCGGAGACCGCCCAGACACGAGCGCTCCGGAGT GGGTGCTGTCCCGTCCGGAGTTCATGCGGCACAGGGGATCGTTCCTGGAC GGAGACCAGCTGGGACCCGTCAGGACCGGCGCTGCGCAGCCGGGCTTGGC CTCGGCCTTGACGGAGCTAACCGACCGAGCGGCCCTGACCAACGGCAGCA GCGGTAGCGGTAACGGTGGCGGTAACCGAGGGGGGGACCCTTCCTCCGAG AACACGTCGTTCGGAGACCTGGCCGGGTTCGTGCTGGGCCCCGGCGACGA AGATCGACGAGAAACCGACGACGCGCTTGCCGTGCTCGGCGTCGCGATGG AGCACCACTCGGCCGCTCTCGCGCTGCTGGCAGGGTGGATGATCGGCCAG CGCCCCGCGCCGGTCGGAGCTGACACCCCAAACACCCGGGGCCGGGGTGA GGGCGGGGGGGAGACTTACCTACCGACCTCGATTGCCCCGCCGGATAATT CGGCCTTCGCGGGGACAGAACCCGCGGGGTCTGAGACGCGGCCGGCGGTA ATGTTGCCACCGCGAGCTGTGACTGCGATCGGAGACTTCCCTTCTTCGTC TCGCGGTGGCGGTGGCGGCGGCAGCGGGGGGGTGATGGCGCCGTGGCTCG GGGGAGGAAGGGGGGAAGTGGGAGGCGGGGCGGGGAGCGCGAGCGGTGGT GACGAGGATAGCGTCCGCGAGATGCTGGAGCTGTCGAGGGAGTTGGACGT GCTGGAGGGGAGGGTGAAGCGGGAGCGCTACAGGGCGCACCGGGCGGCCG ACGAGGAGATTCACCGGACCCCCGGTTTGTACAAGGAGGCGTGTGCGCTC GGAAACGCTCTGATTCTCCGGGGGCACGACTGCTTGTCGCAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11175:2702..7143+

>mRNA_S-dermatodea_contig11175.758.1 ID=mRNA_S-dermatodea_contig11175.758.1|Name=mRNA_S-dermatodea_contig11175.758.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4350bp|location=Sequence derived from alignment at S-dermatodea_contig11175:2702..7143+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGACCGATGTACGGGTTCCTCGACAGGGCCACGCGGCGTTGTGCCACCA
TGGAAAGGCGTTGGTGCTTGGCGGGGTGGCAGAAGGGACGACGTTCATGA
ACGATTGCCTGGTCAGACCGATGTACGGGTTCCTCGACAGGGCCACGCGG
CGTTGTGCCACCATGGAAAGGCGTTGGTGCTTGGCGGGGTGGCAGAAGGG
ACGACGTTCATGAACGATTGCCTGGTAGGTGCTGATCAGGTGCTGATCCC
CCTCCCGCCGCCCCTGCCTCCACTCCGACTGCCGCCGCCATGGCAGCAGC
AACCGACGCCCCCGCTCTCCTCGGGGGCGCGCCTCTGACAAGGGCGGGCG
GTGGCGGCGGCGGTGCGTCGTGGTCGGAGTCGTCTCACGGGAACATGCGC
CGGCTGGGAAGCCGCCAGTCCACCCGACACCAGTCTATCGAGGACGACCT
GTGGGGGTGGTTCGGGGACGACCGGCCTCTGTCCGAGGCGGGCGACCACC
CTGTCCATCACCGCTCGTTCTCGAGGGTCGGCGACCGCGCGGACTTCGCC
GGAGCGTCTGCCGGCGCGGGGGCTAGCGGCGGCGGTGGCGGCGGTCTCCG
GGACGCAGAGGTCACGGTTAGCACGCTGGCGCTGACCGAGCGCCTCGCCA
AGTTATCCGCCGGCCGCGCGCTCTTGGACCGGGTTAGGGGGGACAACCAG
TCCCTCGCCTCCGTCGTGTCCTCCGCCGCGCAAAGCGCGTTCGCGCCTGC
GAGTGACGAGCCCGGCGCCGGCGGCGGCGGCGGCGGCGGCGGGACTACGT
CCTTCTCCTCCGAGGTTCCAGGGGAGAGCGTTGCGGCCGGAGCGGCGGCC
ACCGAGGCGCCCCGCACCCCCACGCGCGCGGTCCAGTTCGCGTCCGATGT
GCCACCGGCGCCAGCGGCGGAGGAGACCGAGGCGTCACCGGCGGAGGTGG
AGGCGGAGGTGGAGGTGGTGGTGGAGGTGGAGGTGGAGGTGGGGGGGGGT
GTTGCCGAGGAGGAGGGGGTTCGAGAGGCGAAGGCGTCGTCGGTTGTGGC
GGTTGGCGGGGGGGAGTTTCGGCAGGCGGTTGTGGATACCAGGGCCAAGC
TTGAGGGTTTGCAGGCGAATATCAGGCGGCTGGTGCGGGAGGGCGGAGGT
GATGAGGAGAAGCTCGAGGAGGCGAGGGGTCGAGTTGCGCCGCTGGTCGC
TAGGCGGACGGCGCTGGCCTCCGCTGCGGTGCCTGGCGCAGAGAGGATGG
CTGTGCGCCTGCAGGAGATCTCGAAGGATCGCCAGCCCCTCCCGCCGCCC
CTGCCTCCACTCCGACTGCCGCCGCCATGGCAGCAGCAACCGACGCCCCC
GCTCTCCTCGGGGGCGCGCCTCTGACAAGGGCGGGCGGTGGCGGCGGCGG
TGCGTCGTGGTCGGAGTCGTCTCACGGGAACATGCGCCGGCTGGGAAGCC
GCCAGTCCACCCGACACCAGTCTATCGAGGACGACCTGTGGGGGTGGTTC
GGGGACGACCGGCCTCTGTCCGAGGCGGGCGACCACCCTGTCCATCACCG
CTCGTTCTCGAGGGTCGGCGACCGCGCGGACTTCGCCGGAGCGTCTGCCG
GCGCGGGGGCTAGCGGCGGCGGTGGCGGCGGTCTCCGGGACGCAGAGGTC
ACGGTTAGCACGCTGGCGCTGACCGAGCGCCTCGCCAAGTTATCCGCCGG
CCGCGCGCTCTTGGACCGGGTTAGGGGGGACAACCAGTCCCTCGCCTCCG
TCGTGTCCTCCGCCGCGCAAAGCGCGTTCGCGCCTGCGAGTGACGAGCCC
GGCGCCGGCGGCGGCGGCGGCGGCGGCGGGACTACGTCCTTCTCCTCCGA
GGTTCCAGGGGAGAGCGTTGCGGCCGGAGCGGCGGCCACCGAGGCGCCCC
GCACCCCCACGCGCGCGGTCCAGTTCGCGTCCGATGTGCCACCGGCGCCA
GCGGCGGAGGAGACCGAGGCGTCACCGGCGGAGGTGGAGGCGGAGGTGGA
GGTGGTGGTGGAGGTGGAGGTGGAGGTGGGGGGGGGTGTTGCCGAGGAGG
AGGGGGTTCGAGAGGCGAAGGCGTCGTCGGTTGTGGCGGTTGGCGGGGGG
GAGTTTCGGCAGGCGGTTGTGGATACCAGGGCCAAGCTTGAGGGTTTGCA
GGCGAATATCAGGCGGCTGGTGCGGGAGGGCGGAGGTGATGAGGAGAAGC
TCGAGGAGGCGAGGGGTCGAGTTGCGCCGCTGGTCGCTAGGCGGACGGCG
CTGGCCTCCGCTGCGGTGCCTGGCGCAGAGAGGATGGCTGTGCGCCTGCA
GGAGATCTCGAAGGATCGCCAGTCCAACCACTCCAACATCAACGCCGCCA
TGCGGGAGGTAGAGCAGCGCGCGCGTACCGCTGGCGGTCGCGTATGGGCG
CTCATCCGCGGCCGCAGTCGTCAGATCGACTCCTCCTCCTCCTCCACCCC
TTCCTCCTCCGACCTCGAGTCCGACCAAGACGACGTGGTTTCCGCGCGCC
CACACGGCGTCGTCGACGTTGGCAGCACCCCGTTGTTACCCTCAAACGGC
GACGGCGCCGGAGACCGCCCAGACACGAGCGCTCCGGAGTGGGTGCTGTC
CCGTCCGGAGTTCATGCGGCACAGGGGATCGTTCCTGGACGGAGACCAGC
TGGGACCCGTCAGGACCGGCGCTGCGCAGCCGGGCTTGGCCTCGGCCTTG
ACGGAGCTAACCGACCGAGCGGCCCTGACCAACGGCAGCAGCGGTAGCGG
TAACGGTGGCGGTAACCGAGGGGGGGACCCTTCCTCCGAGAACACGTCGT
TCGGAGACCTGGCCGGGTTCGTGCTGGGCCCCGGCGACGAAGATCGACGA
GAAACCGACGACGCGCTTGCCGTGCTCGGCGTCGCGATGGAGCACCACTC
GGCCGCTCTCGCGCTGCTGGCAGGGTGGATGATCGGCCAGCGCCCCGCGC
CGGTCGGAGCTGACACCCCAAACACCCGGGGCCGGGGTGAGGGCGGGGGG
GAGACTTACCTACCGACCTCGATTGCCCCGCCGGATAATTCGGCCTTCGC
GGGGACAGAACCCGCGGGTCCAACCACTCCAACATCAACGCCGCCATGCG
GGAGGTAGAGCAGCGCGCGCGTACCGCTGGCGGTCGCGTATGGGCGCTCA
TCCGCGGCCGCAGTCGTCAGATCGACTCCTCCTCCTCCTCCACCCCTTCC
TCCTCCGACCTCGAGTCCGACCAAGACGACGTGGTTTCCGCGCGCCCACA
CGGCGTCGTCGACGTTGGCAGCACCCCGTTGTTACCCTCAAACGGCGACG
GCGCCGGAGACCGCCCAGACACGAGCGCTCCGGAGTGGGTGCTGTCCCGT
CCGGAGTTCATGCGGCACAGGGGATCGTTCCTGGACGGAGACCAGCTGGG
ACCCGTCAGGACCGGCGCTGCGCAGCCGGGCTTGGCCTCGGCCTTGACGG
AGCTAACCGACCGAGCGGCCCTGACCAACGGCAGCAGCGGTAGCGGTAAC
GGTGGCGGTAACCGAGGGGGGGACCCTTCCTCCGAGAACACGTCGTTCGG
AGACCTGGCCGGGTTCGTGCTGGGCCCCGGCGACGAAGATCGACGAGAAA
CCGACGACGCGCTTGCCGTGCTCGGCGTCGCGATGGAGCACCACTCGGCC
GCTCTCGCGCTGCTGGCAGGGTGGATGATCGGCCAGCGCCCCGCGCCGGT
CGGAGCTGACACCCCAAACACCCGGGGCCGGGGTGAGGGCGGGGGGGAGA
CTTACCTACCGACCTCGATTGCCCCGCCGGATAATTCGGCCTTCGCGGGG
ACAGAACCCGCGGGCGGGGGGGTGATGGCGCCGTGGCTCGGGGGAGGAAG
GGGGGAAGTGGGAGGCGGGGCGGGGAGCGCGAGCGGTGGTGACGAGGATA
GCGTCCGCGAGATGCTGGAGCTGTCGAGGGAGTTGGACGTGCTGGAGGGG
AGGGTGAAGCGGGAGCGCTACAGGGCGCACCGGGCGGCCGACGAGGAGAT
TCACCGGACCCCCGGTTTGTACAAGGAGGCGTGTGCGCTCGGAAACGCTC
TGATTCTCCGGGGGCACGACTGCTTGTCGCAGCGGGGGGGTGATGGCGCC
GTGGCTCGGGGGAGGAAGGGGGGAAGTGGGAGGCGGGGCGGGGAGCGCGA
GCGGTGGTGACGAGGATAGCGTCCGCGAGATGCTGGAGCTGTCGAGGGAG
TTGGACGTGCTGGAGGGGAGGGTGAAGCGGGAGCGCTACAGGGCGCACCG
GGCGGCCGACGAGGAGATTCACCGGACCCCCGGTTTGTACAAGGAGGCGT
GTGCGCTCGGAAACGCTCTGATTCTCCGGGGGCACGACTGCTTGTCGCAG
back to top