prot_S-dermatodea_contig11124.734.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11124.734.1
Unique Nameprot_S-dermatodea_contig11124.734.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length341
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 256..314
e-value: 4.0E-5
score: 23.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 164..198
e-value: 5.0E-6
score: 24.4
coord: 306..333
e-value: 0.0025
score: 15.9
coord: 106..128
e-value: 9.8E-4
score: 17.1
coord: 271..303
e-value: 1.3E-4
score: 19.9
coord: 130..162
e-value: 2.6E-5
score: 22.1
coord: 200..228
e-value: 1.3E-4
score: 19.9
coord: 236..268
e-value: 8.0E-4
score: 17.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 303..337
score: 9.767
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 268..302
score: 9.745
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 162..196
score: 10.961
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 127..161
score: 10.38
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 92..126
score: 9.208
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 197..231
score: 10.084
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 233..267
score: 9.394
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 85..211
e-value: 3.0E-32
score: 113.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 219..340
e-value: 8.9E-27
score: 96.2
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 110..224
e-value: 5.7E-11
score: 42.2
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 89..226
coord: 212..336

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11124contigS-dermatodea_contig11124:646..1668 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11124.734.1mRNA_S-dermatodea_contig11124.734.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11124 85..3071 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11124.734.1 ID=prot_S-dermatodea_contig11124.734.1|Name=mRNA_S-dermatodea_contig11124.734.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=341bp
MAARYVARKGLAQASRGVSRIRPENAGHDGARLSRAALLRSGGCVRPLSG
AAAGAALRVVGGGVYVRPVGMRATASVCSRTLSTEEPGPDASIDSYIFAM
KKCWAEGEWEKALGILDDMKAAGVPPNVSAYNAAITACGYGKRPDQAVTL
MREMESANVKPNLVSYNSAILSCGKASRWQQALDLLAEMPAVGITPDVMS
YNAVILTCAAAGQWEKSVDLLREMAETGGVTPEVASYNLAIMACEAAGKW
QKAVALLEEMEGAGILADVGSYNAVIRACGNESQGEKALAVFRNLAVVGL
IPNDASYKAVVKALVAGSQPDEALKLMKEMKNRASTPRRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long