mRNA_S-dermatodea_contig11124.734.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 6.600e-20 Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = -3
Query: 1312 ILGDTRWPEKARSYVDRI*K*-KIFLRHLWQSRKERLAFGDRSCGNNAMSSRGRVVYGLTAKACKT 1506
+LG RW EKA + RI + K FL HLWQSRKERLAFGDRSCGNNA SSRGRVV GLTAKACKT
Sbjct: 105 VLGHRRWVEKAGRGIVRIDRLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLTAKACKT 170
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.180e-17 Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = -3
Query: 1312 ILGDTRWPEKARSYVDRI*K*-KIFLRHLWQSRKERLAFGDRSCGNNAMSSRGRVVYGLTAKACKT 1506
+LG RW EKA + RI + K FL HLWQSRKERLA GDRSCGNNA SSRGRVV GLTAK CKT
Sbjct: 198 VLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 263
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 2.190e-17 Identity = 55/95 (57.89%), Postives = 60/95 (63.16%), Query Frame = -3
Query: 1228 ILGDTRWPEKARSYVDRI*K*-KIFLRHLWQSRKERLAFGDRSCGNNAMSSRGRVVYGLTAKACKT*-VPPLPPPPLAYVIREAGATVTLLGRFP 1506
+LG RW EKA + RI + K FL HLWQSRKERLA GDRSCGNNA SSRGRVV GLTAKACKT V P PP + A V + P
Sbjct: 382 VLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTQRVRPPHPPHRTFFPTTLSAVVFTMDSHP 476
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 5.180e-17 Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = -3
Query: 1312 ILGDTRWPEKARSYVDRI*K*-KIFLRHLWQSRKERLAFGDRSCGNNAMSSRGRVVYGLTAKACKT 1506
+LG RW EKA + RI + K FL HLWQSRKERLA GDRSCGNNA SSRGRVV GLTAKACKT
Sbjct: 433 VLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 498
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 9.440e-17 Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = -3
Query: 1312 ILGDTRWPEKARSYVDRI*K*-KIFLRHLWQSRKERLAFGDRSCGNNAMSSRGRVVYGLTAKACKT 1506
+LG RW EKA + RI + K FL HLWQSRKERLA GDRSCGNNA SSRGRVV GLTAKACKT
Sbjct: 455 VLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 520
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Match: A0A6H5JE77_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE77_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 9.490e-17 Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = -3
Query: 1312 ILGDTRWPEKARSYVDRI*K*-KIFLRHLWQSRKERLAFGDRSCGNNAMSSRGRVVYGLTAKACKT 1506
+LG RW EKA + RI + K FL HLWQSRKERLA GDRSCGNNA SSRGRVV GLTAKACKT
Sbjct: 632 VLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 697
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Match: A0A6H5JJF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF9_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 9.710e-17 Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = -3
Query: 1312 ILGDTRWPEKARSYVDRI*K*-KIFLRHLWQSRKERLAFGDRSCGNNAMSSRGRVVYGLTAKACKT 1506
+LG RW EKA + RI + K FL HLWQSRKERLA GDRSCGNNA SSRGRVV GLTAKACKT
Sbjct: 521 VLGHKRWVEKAGRDLVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGRVVNGLTAKACKT 586
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Match: A0A6H5L4L1_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L1_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 1.040e-16 Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = -3
Query: 1312 ILGDTRWPEKARSYVDRI*K*-KIFLRHLWQSRKERLAFGDRSCGNNAMSSRGRVVYGLTAKACKT 1506
+LG RW EKA + RI + K FL HLWQSRKERLA GDRSCGNNA SSRGRVV GLTAKACKT
Sbjct: 718 VLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 783
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Match: A0A6H5KUW5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW5_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 2.700e-16 Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = -3
Query: 1312 ILGDTRWPEKARSYVDRI*K*-KIFLRHLWQSRKERLAFGDRSCGNNAMSSRGRVVYGLTAKACKT 1506
+LG RW EKA + RI + K FL HLWQSRKERLA GDRSCGNNA SSRGRVV GL+AKACKT
Sbjct: 599 VLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLSAKACKT 664
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Match: A0A6H5K4W7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W7_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 2.850e-16 Identity = 52/88 (59.09%), Postives = 58/88 (65.91%), Query Frame = -3
Query: 1246 ILGDTRWPEKARSYVDRI*K*-KIFLRHLWQSRKERLAFGDRSCGNNAMSSRGRVVYGLTAKACKT*VPPLPPPPLAYVIREAGATVT 1506
+LG RW EKA + RI + K FL HLWQS KERLA GDRSCGNNA SSRGRVV GLTAKACK PPP + R ++VT
Sbjct: 900 VLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSSKERLAIGDRSCGNNAPSSRGRVVDGLTAKACKRKNIRTPPPHDKLISRACVSSVT 987 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11124.734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11124.734.1 >prot_S-dermatodea_contig11124.734.1 ID=prot_S-dermatodea_contig11124.734.1|Name=mRNA_S-dermatodea_contig11124.734.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=341bp MAARYVARKGLAQASRGVSRIRPENAGHDGARLSRAALLRSGGCVRPLSGback to top mRNA from alignment at S-dermatodea_contig11124:85..3071- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11124.734.1 ID=mRNA_S-dermatodea_contig11124.734.1|Name=mRNA_S-dermatodea_contig11124.734.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2987bp|location=Sequence derived from alignment at S-dermatodea_contig11124:85..3071- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11124:85..3071- >mRNA_S-dermatodea_contig11124.734.1 ID=mRNA_S-dermatodea_contig11124.734.1|Name=mRNA_S-dermatodea_contig11124.734.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2046bp|location=Sequence derived from alignment at S-dermatodea_contig11124:85..3071- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |