prot_S-dermatodea_contig11122.733.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11122.733.1
Unique Nameprot_S-dermatodea_contig11122.733.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length288
Homology
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BLAST of mRNA_S-dermatodea_contig11122.733.1 vs. uniprot
Match: D8LHT5_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT5_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.560e-55
Identity = 158/294 (53.74%), Postives = 186/294 (63.27%), Query Frame = 0 
Query:    1 MTCLERLSLSGLTKLTDEALCQVLEACGWKLHHLDISDCTGITDSSLQAVGERCDVLESFSLGMCPLLTSGAIQELFQYRGSSAELA------NVNASSSMKTAVSAAIGNKEKGKASGKGKRKAMIAESAPSLHQDEEDEDLVDGSGQGTGDGIPRPEVGPSADGRRGDAGD-ETGHAMLKSRLRSVSLRGLVQVDDAAMKALAAACSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDGLGHLVDASENLRSLRLWGCTQIGERFLKGHSREELVISRY 287
            M CLERLSLSG+ KLTD  L Q+LEACG +L HLDISDCT +TD++L+A+GERC VLES +LG+CPLLTSGAIQE+FQY GSSAE +      N +A+++          + E G  +GK                                DG              GD G    GH MLKSRL  VSLRGL QVDD A++A+AAACS       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX       DGLGHLVD+ + LRSL LWGC Q+ +RFL+GH++EELVISRY
Sbjct:  491 MACLERLSLSGVIKLTDGILLQILEACGGRLRHLDISDCTDLTDATLKAIGERCGVLESLNLGLCPLLTSGAIQEIFQYSGSSAEASTGRLAQNPSATTAQDDGGINPACSGEGGALNGKXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAEDG--------------GDGGGARKGHTMLKSRLTRVSLRGLAQVDDKAVEAMAAACSGSLRSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFCRSATEDGLGHLVDSCDGLRSLCLWGCMQVTDRFLRGHTKEELVISRY 770
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BLAST of mRNA_S-dermatodea_contig11122.733.1 vs. uniprot
Match: A0A059LKE9_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LKE9_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 2.610e-6
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0 
Query:  245 NDGLGHLVDASENLRSLRLWGCTQIGERFLKGHSREELVI 284
            +D LG LV+A+  LR L+LWGCTQIGERFL GH  E +V+
Sbjct:  440 DDALGELVEAARGLRVLQLWGCTQIGERFLYGHGNENVVV 479
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BLAST of mRNA_S-dermatodea_contig11122.733.1 vs. uniprot
Match: D0MUG6_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MUG6_PHYIT)

HSP 1 Score: 56.2 bits (134), Expect = 2.700e-5
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0 
Query:  246 DGLGHLVDASENLRSLRLWGCTQIGERFLKGHSREELVIS 285
            D LG L D +ENLRSL LWGCTQ+  RFL  HS++EL+++
Sbjct:  441 DALGILADGTENLRSLVLWGCTQVTARFLTCHSQDELIVT 480
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BLAST of mRNA_S-dermatodea_contig11122.733.1 vs. uniprot
Match: A0A0W8D419_PHYNI (Myb-related protein B n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D419_PHYNI)

HSP 1 Score: 56.2 bits (134), Expect = 3.410e-5
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0 
Query:  246 DGLGHLVDASENLRSLRLWGCTQIGERFLKGHSREELVIS 285
            D LG L D +ENLRSL LWGCTQ+  RFL  HS+++L++S
Sbjct:  472 DALGILADGTENLRSLVLWGCTQVTARFLTCHSQDDLIVS 511
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BLAST of mRNA_S-dermatodea_contig11122.733.1 vs. uniprot
Match: A0A8H7Q3I9_MORIS (F-box domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q3I9_MORIS)

HSP 1 Score: 55.5 bits (132), Expect = 5.230e-5
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 0 
Query:    2 TC--LERLSLSGLTKLTDEALCQVLE-ACGWKLHHLDISDCTGITDSSLQAVGERCDVLESFSLGMC 65
            TC  LER++L+G T+LTD  +  +L+ + G  L  +D+SD T +TD+++ A+ E+C  L+  +L MC
Sbjct:  149 TCNRLERITLAGCTRLTDNGILSLLQLSVGQNLISVDLSDMTNVTDTAILAIAEKCPKLQGLNLSMC 215
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11122.733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LHT5_ECTSI1.560e-5553.74Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A059LKE9_9CHLO2.610e-662.50Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]
D0MUG6_PHYIT2.700e-560.00Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A0W8D419_PHYNI3.410e-560.00Myb-related protein B n=1 Tax=Phytophthora nicotia... [more]
A0A8H7Q3I9_MORIS5.230e-540.30F-box domain-containing protein n=1 Tax=Mortierell... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 1..26
e-value: 14.0
score: 13.3
coord: 28..53
e-value: 0.021
score: 24.0
coord: 54..79
e-value: 29.0
score: 10.9
coord: 255..285
e-value: 680.0
score: 0.2
coord: 175..200
e-value: 29.0
score: 11.0
coord: 229..254
e-value: 4.2
score: 16.4
coord: 202..227
e-value: 13.0
score: 13.6
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 229..251
e-value: 0.022
score: 14.8
coord: 30..49
e-value: 0.2
score: 11.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 160..284
e-value: 6.7E-19
score: 69.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..101
e-value: 2.2E-15
score: 58.3
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 3..81
coord: 176..272
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 3..81
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 176..272
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 2..275

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11122contigS-dermatodea_contig11122:2256..5958 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11122.733.1mRNA_S-dermatodea_contig11122.733.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11122 985..6007 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11122.733.1 ID=prot_S-dermatodea_contig11122.733.1|Name=mRNA_S-dermatodea_contig11122.733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=288bp
MTCLERLSLSGLTKLTDEALCQVLEACGWKLHHLDISDCTGITDSSLQAV
GERCDVLESFSLGMCPLLTSGAIQELFQYRGSSAELANVNASSSMKTAVS
AAIGNKEKGKASGKGKRKAMIAESAPSLHQDEEDEDLVDGSGQGTGDGIP
RPEVGPSADGRRGDAGDETGHAMLKSRLRSVSLRGLVQVDDAAMKALAAA
CSDGLRSLDVKGVALVTDNSLVALARFCSSSLESLDLSFCRAVTNDGLGH
LVDASENLRSLRLWGCTQIGERFLKGHSREELVISRY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf