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Homology
BLAST of mRNA_S-dermatodea_contig11122.733.1 vs. uniprot
Match: D8LHT5_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT5_ECTSI) HSP 1 Score: 229 bits (585), Expect = 2.440e-61 Identity = 171/309 (55.34%), Postives = 200/309 (64.72%), Query Frame = 2
Query: 5 DCIWLGPEELEPLKGMTCLERLSLSGLTKLTDEALCQVLEACGWKLHHLDISDCTGITDSSLQAVGERCDVLESFSLGMCPLLTSGAIQELFQYRGSSAELA------NVNASSSMKTAVSAAIGNKEKGKASGKGKRKAMIAESAPSLHQDEEDEDLVDGSGQGTGDGIPRPEVGPSADGRRGDAGD-ETGHAMLKSRLRSVSLRGLVQVDDAAMKALAAACSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDGLGHLVDASENLRSLRLWGCTQIGERFLKGHSREELVISRY 910
DCI LGP+ELEPLKGM CLERLSLSG+ KLTD L Q+LEACG +L HLDISDCT +TD++L+A+GERC VLES +LG+CPLLTSGAIQE+FQY GSSAE + N +A+++ + E G +GK DG GD G GH MLKSRL VSLRGL QVDD A++A+AAACS XXXXXXXXXXXXXXXXXXXXXXXXXXXXX DGLGHLVD+ + LRSL LWGC Q+ +RFL+GH++EELVISRY
Sbjct: 476 DCIQLGPDELEPLKGMACLERLSLSGVIKLTDGILLQILEACGGRLRHLDISDCTDLTDATLKAIGERCGVLESLNLGLCPLLTSGAIQEIFQYSGSSAEASTGRLAQNPSATTAQDDGGINPACSGEGGALNGKXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAEDG--------------GDGGGARKGHTMLKSRLTRVSLRGLAQVDDKAVEAMAAACSGSLRSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFCRSATEDGLGHLVDSCDGLRSLCLWGCMQVTDRFLRGHTKEELVISRY 770
BLAST of mRNA_S-dermatodea_contig11122.733.1 vs. uniprot
Match: A0A059LKE9_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LKE9_9CHLO) HSP 1 Score: 60.1 bits (144), Expect = 1.050e-5 Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query: 782 NDGLGHLVDASENLRSLRLWGCTQIGERFLKGHSREELVI 901
+D LG LV+A+ LR L+LWGCTQIGERFL GH E +V+
Sbjct: 440 DDALGELVEAARGLRVLQLWGCTQIGERFLYGHGNENVVV 479
BLAST of mRNA_S-dermatodea_contig11122.733.1 vs. uniprot
Match: D0MUG6_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MUG6_PHYIT) HSP 1 Score: 57.0 bits (136), Expect = 9.720e-5 Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 2
Query: 785 DGLGHLVDASENLRSLRLWGCTQIGERFLKGHSREELVIS 904
D LG L D +ENLRSL LWGCTQ+ RFL HS++EL+++
Sbjct: 441 DALGILADGTENLRSLVLWGCTQVTARFLTCHSQDELIVT 480
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 199.9 |
| Seed ortholog evalue | 1.6e-48 |
| Seed eggNOG ortholog | 2880.D8LHT5 |
| KEGG rclass | RC00062,RC00189,RC00676,RC01052 |
| KEGG ko | ko:K00276,ko:K10272,ko:K15082 |
| KEGG Reaction | R02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740 |
| KEGG Pathway | ko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110 |
| EggNOG free text desc. | F-box LRR-repeat protein |
| EggNOG OGs | KOG1947@1,KOG1947@2759 |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Ec32 ortholog | Ec-18_000380.1 |
| EC | 1.4.3.21 |
| COG Functional cat. | B |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03400,ko04121 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 2184 |
| Cds size | 864 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11122.733.1 >prot_S-dermatodea_contig11122.733.1 ID=prot_S-dermatodea_contig11122.733.1|Name=mRNA_S-dermatodea_contig11122.733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=288bp
MTCLERLSLSGLTKLTDEALCQVLEACGWKLHHLDISDCTGITDSSLQAV
GERCDVLESFSLGMCPLLTSGAIQELFQYRGSSAELANVNASSSMKTAVS
AAIGNKEKGKASGKGKRKAMIAESAPSLHQDEEDEDLVDGSGQGTGDGIP
RPEVGPSADGRRGDAGDETGHAMLKSRLRSVSLRGLVQVDDAAMKALAAA
CSDGLRSLDVKGVALVTDNSLVALARFCSSSLESLDLSFCRAVTNDGLGH
LVDASENLRSLRLWGCTQIGERFLKGHSREELVISRY* back to topmRNA from alignment at S-dermatodea_contig11122:985..6007- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11122.733.1 ID=mRNA_S-dermatodea_contig11122.733.1|Name=mRNA_S-dermatodea_contig11122.733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5023bp|location=Sequence derived from alignment at S-dermatodea_contig11122:985..6007- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGACTGCATATGGCTAGGGCCGGAAGAGCTGGAGCCCTTAAAGGGAA
TGACGTGCTTGGAGAGGTTGTCTCTAAGTGGGCTAACCAAGCTGACTGAT
GAAGCTCTGTGCCAGGTAAGTATCGCAAGCAAAACACCACACTTTACTAA
AATTTGCAGCAGTACATCGCTGACTGGACGAGCACGGGGGGGCTCCGTTA
GGCCCTCGTGTGATTTAAGTCCTTCTCTTTCCAGGGAGCGCTGTCCTGGT
GTCGCTTCCCATGTCGTTGCGGTGAAGGTTATAATAACACAACAGCGCGG
AGCCGCGCGACACGTGACTCGACGCACACGCAGGATCTGCTCATACCGCA
CCTGTTCATACCGCACATGTATATATGTACGATGCGGCAATACTACGCTC
TCTGTGTGCTGTCTTTTTCTCACTGTAGCGTGTTGATTTTCGTCCCGTTC
GTCGGGGTTCCGCTTCAGGTGCTGGAGGCGTGTGGCTGGAAGCTGCACCA
CCTCGACATTTCGGACTGCACCGGAATCACCGACAGCAGCCTGCAGGCTG
TCGGCGAGCGGTGTGATGTGCTGGAATCGTTTAGCCTGGGCATGTGCCCT
CTGCTTACCAGCGGGGCCATCCAAGAGGTGCTACAGTAGGCTTCGTGATG
CCGGCCTGTGTTTTTGAGTTCGTGCACTTTTGTGCTGCGATTGCAAATCC
GGTTCAAGTGGTGGTTTCATTGTGCCATCGCCGATTTGTGCACTCAATTC
CTCCTTGCGGTTGCTCTGTTGAAAGGCGTAGTGCTCATGTCTCGGTGCCA
TATTAGTACATAGTATTTCAAACATACAGAGCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCGCCTCTCCCCCCGTCCCCCCCCCCCCCCCCGCCCGCG
GCCCGCCCACGCGCAGCACACCACNNNNNNNNNNGGGTTGTGTTTTGTGT
GGTGGTTTTGTGTGTTCCGGCTGTTGTTTTTGCTAATTAGTTTTCCGAAA
AAAGGGGGCCCCCCCCCCCCCCCCCCCGCGTGTGTCTCGTTCCGTCAGCT
GTTCCAATACCGCGGGAGCTCGGCGGAACTAGCCAACGTGAACGCTTCCT
CCTCTATGAAAACCGCCGTTTCAGCCGCGATCGGGAACAAAGAGAAAGGG
AAGGCGAGCGGCAAGGGTAAGAGGAAAGCGATGATTGCCGAGAGCGCCCC
ATCTCTGCACCAAGATGAGGAAGACGAAGATCTTGTCGATGGCAGTGGGC
AGGGGACCGGTGACGGAATACCGCGTCCCGAGGTTGGGCCGTCCGCCGAC
GGTAGGCGAGGTGACGCCGGCGATGAAACCGGACACGCGATGCTGAAGTC
CAGGCTGAGGAGTGTATCGCTTCGGGGGCTGGTACAGGTGGACGATGCGG
CGATGAAGGTGATAATCTGTCATGACGCGATTATCTCGAGGGAACACTTG
ATTGTGTGTTTTTTGTTTGGGGTTGGTTAGATCTTGCTCATCTGGGTAAC
CCACAACTCTCTCTCTGTCTGCTACGGTTACTTCGTATCGCAGCTACCGC
GTACCTTGCCCCGCTGTTCCGCATGCCGGAGTAAGGGCAGTTCCACCGGT
TCTGCTTGCAACACGAAAAGTACACGACGCAACCCACGTTCCGTGGAACG
TTCACGAGCCTGTCTTGAGGTGGCTTGGGACCAGCGCTCAGCCCGCGCGC
GTGGCGGGGATAGGGGCCAGCGAAATTTGTTCTCACCCTATGCTGTATTC
ATGGCACTGTTAGAATTTCCCGCGCGTGGTCAGTCGGTTACGAGCTGTTC
TTGTTCATGTCTTGGTGGGTTGCCGAAAATCGAGGCAGTCGACAGCGCCA
CTGCAATCGAGATGCAAGCCTGGCCCGTACATAGATTTCGAAGAGAGGAA
GTCGGCCATGGGCTGTCGTTTGGCTTTTTTTTCCTGGGCTGGGCCAAAGC
GACTCCTTGTTTCGTTCATCTGCTGGCGGTTGCTAGTGACAAAATGTAAA
CCTGGACAGACTGAGCTGCTGTTGAACACGTGCTCTAAGAAGTCAAGCGT
GGATGGCGCGATGCAAGCAGCATGGCAGAAACGGTCAACCTTTTATCGGC
GGCGGGTTCACGGCCGCCGGATGCTCGCAAGTGCGCCCCATTCCCTCCTT
GTGCAGGATGCTCCTCACCTCTTCGTATTTTAATGCCATCTTCCAGGCTT
TGGCGGCTGCCTGCTCGGACGGCCTCAGGTCGCTGGACGTCAAGGGGGTG
GCTTTGGTGACTGACAACAGCCTGGTGAGCGCTTTCGCGCGAGGAGAGAA
CGGACGCATTTCGACGCGATCGTGTTTTGACGCATATGGTACCCTACGTT
TTCCTTATTATAACAGTGCTAGACCTGAACATGATGTGACCGGCGTAGCT
TGTACGGCTGCCGCCGCCGTGGATGGATGTAGAATTTATCACATACTGTA
GCATCCACGAATCAACTGAACAGGTTTCATATGGTACCCTACGTTTTCCA
TTTTAGAACAGTGCTAGACCCGAACATGCTGTGACCGCCGTTACTTGTAC
TGCTGTCGCCGCCGTGGATGGATGTAGTGGTTATCACATACTGTAGGATC
CACGAACTAACGGAAGTCAGAGTGGCGGCAGCGGGGGAGGGGGGTGGTTT
ATATAGATATGGGTTGCCTACCCTGTTCCCCGGCCACCCCCGCCGGCCTC
CCTTTCGGGTGCGTTGCCATAGGCGTGCTCGTTTCTGTTCATACGTTACT
CTCTACGCACAATGTGTGAGTGCGATACTGAAGTAAGTCGGCGAGCTGCT
CACAGGTCGCCTGCTGGCCATGTTGCATTGTGGCCCATGCTTAGGTCAGC
GTGGAGGCATCGCGTCAGTCGTCCAGCCCCCCGCCTACCGCAGTGCCGTG
CTGATGAAAACCACGTCGAAATTGTGCGTTTCCCTATGCGTGTTAAAACG
AACGAGGGCAAAGGAGCAAACCCCAGAGTCAGAAGCACCGAGTTGGACTT
CCACCCACTCTGTAGACGGCCACTTGTGTAAATGTGAAAGATTTAGATAC
CTCGTGATTCGGCATCGTTGGGTTCAGTTAAAGTCGTGAAGTTGGGTGGA
TTAGGACGTCATGTTTATTTTTTCTTAAAACGAAAATCCGACATGTGCAA
ACAACACGCCGCACACATGTTATAGCTCTAGGGAGGGAGTGTAGGTTCTG
GAGTCGAAGGTGAGTGCGAAAGCCCGGAAGCTGTGGCTGAATTTCTTCGT
GCCCACTGCCGCGTGTGCTCCCTACCGTAGCGCAGTCAATTCGCGGAGGT
CATGGCGCCTGCATGTACTCAGCTCGATCCGCAATACAAATGTGGGCGGG
GATGACTCTGCCATACTACCCGTCATACGTATGCCTATGGGTAGAGCTCT
GCGCTTATTTTCTTGATCCAGGCGTGATCTCTGAAAGAGGAACAACTTGA
TAGTTTCTACAGCGCGTGTGGCTCAGGACTGACAAATGTAGGAGTATCGA
GTATAAATGCTTGACACCCCCCCCTCCCCCATCGCTGCTTCGTCCCGAAA
GGTGGCGCTGGCTCGGTTCTGCTCGTCGTCACTGGAGTCATTGGACCTGT
CTTTCTGTCGAGCAGTTACGAATGATGGCCTAGGACATTTGGTGGACGCC
TCCGAAAATTTGCGGTCGCTGAGGTTGTGGGGCTGCACCCAGATCGGGGA
AAGATTTTTGAAGGGCCACAGCAGGGAGGAGCTTGTCATCTCGCGATACT
GACCGAGCTTGGAGCGCTCTCGCTTCCCGAACGAACATCATTTTTAGTGC
ATTTCTTGTTTTGTTTTTCTTGTCGACAAGACAGTTATGGACTGTAGTTT
AGAGAGGGTATAGGAGTGTAAGTTGTAGTATATTGTAGGATACAGCATGC
CAGCGAATTAGTGGCGCTTCTGTCCGGACACGGCAATGCCTGCGATTGTG
GGCAAGCCAGGGCGTCGCGGTGACGTGCTTTCGTGGAGCATTACCGCAGC
GAAACGTTCAAATCAGGACCTGTGTTCGTGTGCTTCTCTGGGATAGCTCG
GTGAAAGCTCGTATGCAACGTGTTCGGTTGCGAATCGACCGACAAGTCTA
CTTTCAGTTCCCCAGTGTTGATGATAGCATACATTGTGAGAGTGGAGCTT
GTCATCTTTGAGGTCTCTACCACAGTAGCATGGCCCACTTGCACTCTGCA
ACAAAGCAATTTTTAATTGTTGAAGCTGCAGTTGGCGCCCTCTGCATTTA
GTAGGGCTAGTGGCATCGAGCGCATGAAGCTGCTATCTTTTTGGTCAAGA
TGCGCTTGTCCCACGCAGCAAGTGTAGTACATCCTAGGCGAATAGTGTAC
CTGTAATACTCGCGTTGGCGTTCATGTTGAGAGCGTGTTGAGTGAGAACA
TCTGTTTGGGTCTCGGGTCGAGCGCGTGGTGATGGCCGGTGATAGCGCCT
GCTATTAAAATATTCCGTGATAGTAGAACTTACACAGGACCAATGGATTC
GGTCGTGATCCTGTTTTGTGCTACTTGTGCACCTCTTCTCGCCGAGCTGC
ACAATACAACTCCGCACCTCCTCTACTACGGAGTGAAAACGTCAACGCTG
TGGCCACTCCTACCGCTGTTCGGAGTGTACGTGCTCCTGCAGATCGATGT
GGGGGTCCAGTCGAGGTTGCGTGTAGGAGTCATCCGGGCGATTGCGAAGT
CTGCCAACCCCAGCAGACCACACCAGGCCGCAGTTGCCCAAGACTTGTAT
GAGGACGATTGACGGCGGAATCCCAGTCCAGGGTGCGCCCGGGAGTAGAT
TCGACTTGGGCACGGTTTTGTTTTTATGGGTTGCGCGTGGCGTTCCCGCC
ATGGTATCGGCTATACCCTTAAGAGCAGCGGCTCGGGCTAGCATACTTTG
CATATCCCTTCAGCGGCAAGAAGACGCGGCACACTACTTGAGAGTGGTTG
GGGTCGCTCGTATGGACAAGTTACCTGACGCCAAAACGGAGGCAGACATA
GAAGAAGGGAAGACATATATGAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11122:985..6007- >mRNA_S-dermatodea_contig11122.733.1 ID=mRNA_S-dermatodea_contig11122.733.1|Name=mRNA_S-dermatodea_contig11122.733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1728bp|location=Sequence derived from alignment at S-dermatodea_contig11122:985..6007- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGTGCTTGGAGAGGTTGTCTCTAAGTGGGCTAACCAAGCTGACTGA
TGAAGCTCTGTGCCAGATGACGTGCTTGGAGAGGTTGTCTCTAAGTGGGC
TAACCAAGCTGACTGATGAAGCTCTGTGCCAGGTGCTGGAGGCGTGTGGC
TGGAAGCTGCACCACCTCGACATTTCGGACTGCACCGGAATCACCGACAG
CAGCCTGCAGGCTGTCGGCGAGCGGTGTGATGTGCTGGAATCGTTTAGCC
TGGGCATGTGCCCTCTGCTTACCAGCGGGGCCATCCAAGAGGTGCTGGAG
GCGTGTGGCTGGAAGCTGCACCACCTCGACATTTCGGACTGCACCGGAAT
CACCGACAGCAGCCTGCAGGCTGTCGGCGAGCGGTGTGATGTGCTGGAAT
CGTTTAGCCTGGGCATGTGCCCTCTGCTTACCAGCGGGGCCATCCAAGAG
CTGTTCCAATACCGCGGGAGCTCGGCGGAACTAGCCAACGTGAACGCTTC
CTCCTCTATGAAAACCGCCGTTTCAGCCGCGATCGGGAACAAAGAGAAAG
GGAAGGCGAGCGGCAAGGGTAAGAGGAAAGCGATGATTGCCGAGAGCGCC
CCATCTCTGCACCAAGATGAGGAAGACGAAGATCTTGTCGATGGCAGTGG
GCAGGGGACCGGTGACGGAATACCGCGTCCCGAGGTTGGGCCGTCCGCCG
ACGGTAGGCGAGGTGACGCCGGCGATGAAACCGGACACGCGATGCTGAAG
TCCAGGCTGAGGAGTGTATCGCTTCGGGGGCTGGTACAGGTGGACGATGC
GGCGATGAAGCTGTTCCAATACCGCGGGAGCTCGGCGGAACTAGCCAACG
TGAACGCTTCCTCCTCTATGAAAACCGCCGTTTCAGCCGCGATCGGGAAC
AAAGAGAAAGGGAAGGCGAGCGGCAAGGGTAAGAGGAAAGCGATGATTGC
CGAGAGCGCCCCATCTCTGCACCAAGATGAGGAAGACGAAGATCTTGTCG
ATGGCAGTGGGCAGGGGACCGGTGACGGAATACCGCGTCCCGAGGTTGGG
CCGTCCGCCGACGGTAGGCGAGGTGACGCCGGCGATGAAACCGGACACGC
GATGCTGAAGTCCAGGCTGAGGAGTGTATCGCTTCGGGGGCTGGTACAGG
TGGACGATGCGGCGATGAAGGCTTTGGCGGCTGCCTGCTCGGACGGCCTC
AGGTCGCTGGACGTCAAGGGGGTGGCTTTGGTGACTGACAACAGCCTGGC
TTTGGCGGCTGCCTGCTCGGACGGCCTCAGGTCGCTGGACGTCAAGGGGG
TGGCTTTGGTGACTGACAACAGCCTGGTGGCGCTGGCTCGGTTCTGCTCG
TCGTCACTGGAGTCATTGGACCTGTCTTTCTGTCGAGCAGTTACGAATGA
TGGCCTAGGACATTTGGTGGACGCCTCCGAAAATTTGCGGTCGCTGAGGT
TGTGGGGCTGCACCCAGATCGGGGAAAGATTTTTGAAGGGCCACAGCAGG
GAGGAGCTTGTCATCTCGCGATACTGAGTGGCGCTGGCTCGGTTCTGCTC
GTCGTCACTGGAGTCATTGGACCTGTCTTTCTGTCGAGCAGTTACGAATG
ATGGCCTAGGACATTTGGTGGACGCCTCCGAAAATTTGCGGTCGCTGAGG
TTGTGGGGCTGCACCCAGATCGGGGAAAGATTTTTGAAGGGCCACAGCAG
GGAGGAGCTTGTCATCTCGCGATACTGA back to top
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