mRNA_S-dermatodea_contig11119.731.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11119.731.1
Unique NamemRNA_S-dermatodea_contig11119.731.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11119.731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11119contigS-dermatodea_contig11119:402..903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size502
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11119.731.1prot_S-dermatodea_contig11119.731.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11119 462..770 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924188.221302-UTR-S-dermatodea_contig11119:401..4611622924188.221302-UTR-S-dermatodea_contig11119:401..461Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11119 402..461 +
1694079078.7631829-UTR-S-dermatodea_contig11119:401..4611694079078.7631829-UTR-S-dermatodea_contig11119:401..461Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11119 402..461 +
1622924188.245484-UTR-S-dermatodea_contig11119:770..9031622924188.245484-UTR-S-dermatodea_contig11119:770..903Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11119 771..903 +
1694079078.7827792-UTR-S-dermatodea_contig11119:770..9031694079078.7827792-UTR-S-dermatodea_contig11119:770..903Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11119 771..903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924188.2335172-CDS-S-dermatodea_contig11119:461..7701622924188.2335172-CDS-S-dermatodea_contig11119:461..770Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11119 462..770 +
1694079078.7727768-CDS-S-dermatodea_contig11119:461..7701694079078.7727768-CDS-S-dermatodea_contig11119:461..770Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11119 462..770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11119.731.1

>prot_S-dermatodea_contig11119.731.1 ID=prot_S-dermatodea_contig11119.731.1|Name=mRNA_S-dermatodea_contig11119.731.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
MLLPRRKHEARRGMASVGHKKTFPHVGNNDLSPSPHLPTIIFPRTGNTKA
LDMRVESSRVKSKSRALLHGARPQEQPQFAVTTTPPLSAPTLAPAPWLKA
LA*
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mRNA from alignment at S-dermatodea_contig11119:402..903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11119.731.1 ID=mRNA_S-dermatodea_contig11119.731.1|Name=mRNA_S-dermatodea_contig11119.731.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=502bp|location=Sequence derived from alignment at S-dermatodea_contig11119:402..903+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTACCCTCATCACGGTATGCTGCTGCCAAGACGTAAAAATGCTGCTGCCA
AGACGTAAAAATGCTGCTGCCAAGACGTAAACATGAGGCGAGACGGGGCA
TGGCATCGGTGGGACACAAAAAGACATTCCCGCACGTCGGTAATAATGAT
TTATCTCCGTCTCCTCATCTTCCTACTATCATATTCCCGAGAACCGGAAA
CACGAAAGCTCTTGACATGAGAGTCGAGTCGAGTCGAGTCAAATCAAAAT
CACGCGCGCTCTTACACGGCGCGAGGCCACAGGAACAACCTCAATTTGCC
GTCACAACAACACCGCCACTATCAGCACCAACACTAGCACCAGCACCATG
GCTCAAAGCGCTTGCCTGATTTGACACGACACACGCGCGCGGCCGCTCTC
TTACAATCGTTGAACTTTAAACCACACACACACAAACACACACACACACA
CCATGTCGGATTTCCTCGAGATCTCTTGTGCCCGTCCGGCCTGAAAACTA
AT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11119:402..903+

>mRNA_S-dermatodea_contig11119.731.1 ID=mRNA_S-dermatodea_contig11119.731.1|Name=mRNA_S-dermatodea_contig11119.731.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig11119:402..903+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGCTGCCAAGACGTAAACATGAGGCGAGACGGGGCATGGCATCGGT
GGGACACAAAAAGACATTCCCGCACGTCGGTAATAATGATTTATCTCCGT
CTCCTCATCTTCCTACTATCATATTCCCGAGAACCGGAAACACGAAAGCT
CTTGACATGAGAGTCGAGTCGAGTCGAGTCAAATCAAAATCACGCGCGCT
CTTACACGGCGCGAGGCCACAGGAACAACCTCAATTTGCCGTCACAACAA
CACCGCCACTATCAGCACCAACACTAGCACCAGCACCATGGCTCAAAGCG
CTTGCCTGAATGCTGCTGCCAAGACGTAAACATGAGGCGAGACGGGGCAT
GGCATCGGTGGGACACAAAAAGACATTCCCGCACGTCGGTAATAATGATT
TATCTCCGTCTCCTCATCTTCCTACTATCATATTCCCGAGAACCGGAAAC
ACGAAAGCTCTTGACATGAGAGTCGAGTCGAGTCGAGTCAAATCAAAATC
ACGCGCGCTCTTACACGGCGCGAGGCCACAGGAACAACCTCAATTTGCCG
TCACAACAACACCGCCACTATCAGCACCAACACTAGCACCAGCACCATGG
CTCAAAGCGCTTGCCTGA
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