mRNA_S-dermatodea_contig11111.729.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11111.729.1
Unique NamemRNA_S-dermatodea_contig11111.729.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Match: D6PJ36_9ZZZZ (Uncharacterized protein n=1 Tax=uncultured organism MedDCM-OCT-S04-C2 TaxID=743613 RepID=D6PJ36_9ZZZZ)

HSP 1 Score: 57.4 bits (137), Expect = 2.860e-8
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   19 EKDGLGNPDAIAAFVSDCHPI-AERRTEYIKELMKYAPVHSYGTCLNNR 162
            EK G     AIAAFVS+C    AE+R  Y+++LMK  PVHSYG CL NR
Sbjct:   25 EKTGYDTGVAIAAFVSNCKAAGAEQRANYLRDLMKLIPVHSYGGCLKNR 73
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BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Match: A0A5E4PYF7_9NEOP (Fucosyltransferase n=1 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4PYF7_9NEOP)

HSP 1 Score: 51.6 bits (122), Expect = 3.600e-6
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:   22 KDGLGNPDAIAAFVSDCHPIAERRTEYIKELMKYAPVHSYGTCLNNR 162
            K+G  N  A+    +DC    ER  EY+KELMKY  V SYGTCL N+
Sbjct:  143 KNGFKNISAVMYLQTDCETATER-DEYVKELMKYIQVDSYGTCLKNK 188
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BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Match: UPI0009E25787 (alpha-(1,3)-fucosyltransferase 11-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E25787)

HSP 1 Score: 51.2 bits (121), Expect = 4.920e-6
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   16 QEKDGLGNPDAIAAFV---SDCHPIAERRTEYIKELMKYAPVHSYGTCLNNR 162
            +EK+ L   +++A  +   SDCH  ++R   Y+KELMKY  + SYG CLNNR
Sbjct:  104 EEKNRLQKEESLAPIIYVQSDCHTPSDRE-RYVKELMKYIEIDSYGRCLNNR 154
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BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Match: A0A8B7DNN6_HYDVU (Fucosyltransferase n=5 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DNN6_HYDVU)

HSP 1 Score: 50.8 bits (120), Expect = 6.770e-6
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   37 NPDAIAAFVSDCHPIAERRTEYIKELMKYAPVHSYGTCLNNR 162
            N  A+  F SDC P ++R T Y+KELMKY  V SYG CLNN+
Sbjct:  206 NLAAVVYFQSDCDPPSDRDT-YVKELMKYIAVDSYGPCLNNK 246
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BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Match: UPI0009E63891 (alpha-(1,3)-fucosyltransferase 11-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E63891)

HSP 1 Score: 50.1 bits (118), Expect = 1.170e-5
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 VPFFGQEKDGLGNPDAIAAFVSDCHPIAERRTEYIKELMKYAPVHSYGTCLNNR 162
            VPF  ++KDGL     IAAF S+C P+   RTEY+++L+KY  V SYG CL N+
Sbjct:  136 VPF--KDKDGL----VIAAF-SNCEPL---RTEYMRQLIKYVQVDSYGACLKNK 179
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BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Match: A0A7D9K0C2_PARCT (Fucosyltransferase (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K0C2_PARCT)

HSP 1 Score: 49.7 bits (117), Expect = 1.400e-5
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   49 IAAFVSDCHPIAERRTEYIKELMKYAPVHSYGTCLNNR 162
            IAAF S+C P+   RTEY+++LM+Y PV SYG CL+NR
Sbjct:  102 IAAF-SNCEPV---RTEYLRQLMRYIPVDSYGACLHNR 135
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BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Match: A0A1Y1WBX8_9FUNG (Fucosyltransferase n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WBX8_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 1.710e-5
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 VPFFGQEKDGLGNPDAIAAFVSDCHPIAERRTEYIKELMKYAPVHSYGTCLNNR 162
            +P   + KDG G     A F+S+C      R E++KELMKYA + SYG CLNN+
Sbjct:  132 LPLKEKGKDGRG---IAAVFISNCSA-RNSRLEFLKELMKYAKIDSYGMCLNNK 181
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BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Match: A0A3M6UJG6_POCDA (Fucosyltransferase n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UJG6_POCDA)

HSP 1 Score: 49.7 bits (117), Expect = 1.710e-5
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 VPFFGQEKDGLGNPDAIAAFVSDCHPIAERRTEYIKELMKYAPVHSYGTCLNNR 162
            VPF  ++KDGL     I A  S+C P+   RTEY+++LMK+  V SYG CL N+
Sbjct:  132 VPF--KDKDGL-----ILAVFSNCEPV---RTEYMRQLMKFVQVDSYGACLRNK 175
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BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Match: UPI000C047419 (alpha-(1,3)-fucosyltransferase 11-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C047419)

HSP 1 Score: 49.7 bits (117), Expect = 1.720e-5
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 VPFFGQEKDGLGNPDAIAAFVSDCHPIAERRTEYIKELMKYAPVHSYGTCLNNR 162
            VPF  ++KDGL     I A  S+C P+   RTEY+++LMK+  V SYG CL N+
Sbjct:  178 VPF--KDKDGL-----IMAVFSNCEPV---RTEYMRQLMKFVQVDSYGACLRNK 221
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BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Match: A0A2B4R5X7_STYPI (Fucosyltransferase n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R5X7_STYPI)

HSP 1 Score: 49.7 bits (117), Expect = 1.740e-5
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 VPFFGQEKDGLGNPDAIAAFVSDCHPIAERRTEYIKELMKYAPVHSYGTCLNNR 162
            VPF  ++KDGL     I A  S+C P+   RTEY+++LMK+  V SYG CL N+
Sbjct:  361 VPF--KDKDGL-----IMAVFSNCEPV---RTEYMRQLMKFVQVDSYGACLRNK 404
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11111.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D6PJ36_9ZZZZ2.860e-857.14Uncharacterized protein n=1 Tax=uncultured organis... [more]
A0A5E4PYF7_9NEOP3.600e-651.06Fucosyltransferase n=1 Tax=Leptidea sinapis TaxID=... [more]
UPI0009E257874.920e-646.15alpha-(1,3)-fucosyltransferase 11-like n=1 Tax=Orb... [more]
A0A8B7DNN6_HYDVU6.770e-657.14Fucosyltransferase n=5 Tax=Hydra vulgaris TaxID=60... [more]
UPI0009E638911.170e-551.85alpha-(1,3)-fucosyltransferase 11-like n=1 Tax=Orb... [more]
A0A7D9K0C2_PARCT1.400e-560.53Fucosyltransferase (Fragment) n=1 Tax=Paramuricea ... [more]
A0A1Y1WBX8_9FUNG1.710e-546.30Fucosyltransferase n=1 Tax=Anaeromyces robustus Ta... [more]
A0A3M6UJG6_POCDA1.710e-548.15Fucosyltransferase n=2 Tax=Pocillopora damicornis ... [more]
UPI000C0474191.720e-548.15alpha-(1,3)-fucosyltransferase 11-like n=1 Tax=Sty... [more]
A0A2B4R5X7_STYPI1.740e-548.15Fucosyltransferase n=1 Tax=Stylophora pistillata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11111contigS-dermatodea_contig11111:118..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2e-08
Seed eggNOG ortholog2880.D7G396
Preferred nameFUT13
KEGG rclassRC00002
KEGG koko:K00753,ko:K01509,ko:K09669,ko:K14412
KEGG ReactionR00086,R06015,R09318,R11318
KEGG Pathwayko00230,ko00513,ko01100,ko04742,map00230,map00513,map01100,map04742
GOsGO:0000139,GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0005996,GO:0006004,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0008150,GO:0008152,GO:0008417,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010493,GO:0012505,GO:0016020,GO:0016051,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0018392,GO:0019317,GO:0019318,GO:0019320,GO:0019538,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0036065,GO:0036211,GO:0042354,GO:0042355,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046920,GO:0070085,GO:0071704,GO:0097708,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.alpha-(1->3)-fucosyltransferase activity
EggNOG OGsKOG2619@1,KOG2619@2759
EC2.4.1.214,2.4.1.65,3.6.1.3
COG Functional cat.M
CAZyGT10
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionAlpha-(1,3)-fucosyltransferase, family GT10
Ec32 orthologEc-03_005030.1
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924188.1152287-CDS-S-dermatodea_contig11111:117..2821622924188.1152287-CDS-S-dermatodea_contig11111:117..282Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11111 118..282 +
1694079078.6682413-CDS-S-dermatodea_contig11111:117..2821694079078.6682413-CDS-S-dermatodea_contig11111:117..282Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11111 118..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11111.729.1prot_S-dermatodea_contig11111.729.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11111 118..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11111.729.1

>prot_S-dermatodea_contig11111.729.1 ID=prot_S-dermatodea_contig11111.729.1|Name=mRNA_S-dermatodea_contig11111.729.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=55bp
VPFFGQEKDGLGNPDAIAAFVSDCHPIAERRTEYIKELMKYAPVHSYGTC
LNNR*
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mRNA from alignment at S-dermatodea_contig11111:118..282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11111.729.1 ID=mRNA_S-dermatodea_contig11111.729.1|Name=mRNA_S-dermatodea_contig11111.729.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at S-dermatodea_contig11111:118..282+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCCATTTTTTGGACAGGAGAAGGACGGACTCGGTAATCCAGACGCGAT
CGCGGCGTTTGTGTCAGACTGCCACCCAATCGCAGAAAGGCGCACGGAGT
ACATTAAGGAGCTGATGAAGTATGCGCCTGTACACTCTTACGGTACCTGC
TTGAACAATAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11111:118..282+

>mRNA_S-dermatodea_contig11111.729.1 ID=mRNA_S-dermatodea_contig11111.729.1|Name=mRNA_S-dermatodea_contig11111.729.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at S-dermatodea_contig11111:118..282+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCCATTTTTTGGACAGGAGAAGGACGGACTCGGTAATCCAGACGCGAT
CGCGGCGTTTGTGTCAGACTGCCACCCAATCGCAGAAAGGCGCACGGAGT
ACATTAAGGAGCTGATGAAGTATGCGCCTGTACACTCTTACGGTACCTGC
TTGAACAATAGGTGAGTCCCATTTTTTGGACAGGAGAAGGACGGACTCGG
TAATCCAGACGCGATCGCGGCGTTTGTGTCAGACTGCCACCCAATCGCAG
AAAGGCGCACGGAGTACATTAAGGAGCTGATGAAGTATGCGCCTGTACAC
TCTTACGGTACCTGCTTGAACAATAGGTGA
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