mRNA_S-dermatodea_contig11109.727.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11109.727.1
Unique NamemRNA_S-dermatodea_contig11109.727.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11109.727.1 vs. uniprot
Match: A0A6H5JMD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMD5_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.670e-48
Identity = 94/138 (68.12%), Postives = 105/138 (76.09%), Query Frame = 1 
Query:    1 MFTLNVHAPVFTPTIKL------PIFNDGKLGAVRILDSDEYRIEFL-HSFNRDEVADEDLFNPAVYPVSAEDHEELAAAEAFNREMAELEDLEHQQELRSLLQDRIAALQHGVAN-QRPAKIASINGGVFSGRSRDA 390
            MFTLN +AP F P+  +      PIFN G    V ILDSDEYR EFL ++FNR+ VADEDLFNPAVYPVSA DHEEL AAE FNREMAELE LEHQ+ELRSLLQ RI+ALQ G +  QRPAKIAS+N  +FSG SR A
Sbjct:    1 MFTLNANAPSFVPSNPVHQQMVRPIFNSGVPSCVLILDSDEYRSEFLVNTFNREAVADEDLFNPAVYPVSAADHEELTAAENFNREMAELEALEHQEELRSLLQARISALQQGTSGKQRPAKIASMNSAMFSGLSRGA 138
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11109.727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMD5_9PHAE1.670e-4868.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11109contigS-dermatodea_contig11109:1096..2556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006490.1
Exons4
Model size390
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11109.727.1prot_S-dermatodea_contig11109.727.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11109 1096..2556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924188.0531409-CDS-S-dermatodea_contig11109:1095..11811622924188.0531409-CDS-S-dermatodea_contig11109:1095..1181Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 1096..1181 -
1694079078.6266263-CDS-S-dermatodea_contig11109:1095..11811694079078.6266263-CDS-S-dermatodea_contig11109:1095..1181Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 1096..1181 -
1622924188.065821-CDS-S-dermatodea_contig11109:1721..18291622924188.065821-CDS-S-dermatodea_contig11109:1721..1829Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 1722..1829 -
1694079078.6365268-CDS-S-dermatodea_contig11109:1721..18291694079078.6365268-CDS-S-dermatodea_contig11109:1721..1829Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 1722..1829 -
1622924188.0753982-CDS-S-dermatodea_contig11109:2101..21361622924188.0753982-CDS-S-dermatodea_contig11109:2101..2136Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 2102..2136 -
1694079078.6457336-CDS-S-dermatodea_contig11109:2101..21361694079078.6457336-CDS-S-dermatodea_contig11109:2101..2136Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 2102..2136 -
1622924188.0845504-CDS-S-dermatodea_contig11109:2395..25561622924188.0845504-CDS-S-dermatodea_contig11109:2395..2556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 2396..2556 -
1694079078.655735-CDS-S-dermatodea_contig11109:2395..25561694079078.655735-CDS-S-dermatodea_contig11109:2395..2556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 2396..2556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11109.727.1

>prot_S-dermatodea_contig11109.727.1 ID=prot_S-dermatodea_contig11109.727.1|Name=mRNA_S-dermatodea_contig11109.727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=130bp
MFTLNVHAPVFTPTIKLPIFNDGKLGAVRILDSDEYRIEFLHSFNRDEVA
DEDLFNPAVYPVSAEDHEELAAAEAFNREMAELEDLEHQQELRSLLQDRI
AALQHGVANQRPAKIASINGGVFSGRSRDA
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mRNA from alignment at S-dermatodea_contig11109:1096..2556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11109.727.1 ID=mRNA_S-dermatodea_contig11109.727.1|Name=mRNA_S-dermatodea_contig11109.727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1461bp|location=Sequence derived from alignment at S-dermatodea_contig11109:1096..2556- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTTACCCTGAACGTCCATGCGCCGGTATTTACCCCGACGATCAAACT
GCCCATCTTCAACGACGGGAAACTGGGTGCGGTGCGCATCCTCGACTCCG
ACGAATACCGCATCGAGTTCCTGCACAGCTTCAACCGCGATGAAGTGGCC
GACGAAGACCTGTGAGTATACGCGCGTGCATGCGTGCGCGCGCGCGGTCG
CGGCGGCGCTATGTAGGGGAGCATGCTGCAACAGCTCTCATTACTATTAT
ACTTGTTTTGGGGTTTTGCGCATATTTCAGAAAGTGTGTAGAAAAAGCAG
AGAGCATCGATTTTGTCTTGTTTTCTTTGTTTTTTTCTCGAGTGTTCCCC
CGCTGTCCTGTCCTGTCCTGAGCTCCCCCCTTCGTGCGCCCATGTGCTGC
CGTCCTGCACCTTATGCCAGATTCAACCCAGCAGTGTACCCAGTATCAGC
AGAAGGTGAGGCGTAGCCTCTCTCTTTCGCTCGCTCGCGCGCTCTCACGC
TGCCGATCCGACGGGCTGCAGTTTTCGTCCAACATGGCTCTCTGCGAAAA
TGGCCGAGATGCATCCCTCAAAAATGGCTACTGCTGTTGTTGCAGTCTAA
TTCCAGTATATATTTTGTCTATATTTTGTCTATATTTTGTAGAAGCTCGC
GCCTTCTGCCCGCGAGCGATATCCCCAACCGGCTGTTACCCTGTGCATGC
AACATCCATTGCCACGCCTGCCCTCAGATCACGAGGAGCTGGCCGCGGCA
GAAGCCTTCAACCGCGAGATGGCAGAGCTGGAGGATCTAGAGCACCAGCA
AGAGCTGCGCTCGCTACTTCAAGACCGGATCGCAGGTTAGCACAGAGTAG
AAGCAGACCTAAACGTGAAGATCCCAAAATGTCCCGTTTTCTCGAAGGCG
CGAAGTGCGACGCGTGGCATTTCCCCCCCCCTCCCTGCTCTTGGACATCT
CCCCGAGACCCCCCCTCTCCAGCATATCATCGGACAAATCAGTGCCCGGG
GCATGTGCTTGTCGAGGGTGCAGTCCGCTCGTCAGGATATCCTCGCGCCC
GCGGCGAGAGAGGGAGCTTGGACACCGAAGTTCTATGCCTGGTTCGGTGG
TGCATGCGCGGCAATCTACCGTAACCCTGCTTGCTGGAGCTGAAAAAAAA
CGAGAGACCACCATTTTACGTTTCAGACACACAAGACAAAACAACTTGAC
CGAAGTTGACCGAAGTGCCCCCTCCCCCCCCTCCCCTCCCCCCCCCAACC
TAAGCGACGCTGGTCTGATAGGGTTATGATAGCTGTATCTATTTCTGTTA
GTTGAGCTTATTTCCACCCTTATCTCCGCCCGCTGCCTTCTTGTGGAATG
CCTCCTGTCATATCATTATGTCCAGCTCTCCAGCACGGGGTAGCGAACCA
GAGACCAGCCAAGATCGCATCCATCAACGGCGGCGTCTTCTCCGGACGCT
CGAGGGATGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11109:1096..2556-

>mRNA_S-dermatodea_contig11109.727.1 ID=mRNA_S-dermatodea_contig11109.727.1|Name=mRNA_S-dermatodea_contig11109.727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at S-dermatodea_contig11109:1096..2556- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTTACCCTGAACGTCCATGCGCCGGTATTTACCCCGACGATCAAACT
GCCCATCTTCAACGACGGGAAACTGGGTGCGGTGCGCATCCTCGACTCCG
ACGAATACCGCATCGAGTTCCTGCACAGCTTCAACCGCGATGAAGTGGCC
GACGAAGACCTATGTTTACCCTGAACGTCCATGCGCCGGTATTTACCCCG
ACGATCAAACTGCCCATCTTCAACGACGGGAAACTGGGTGCGGTGCGCAT
CCTCGACTCCGACGAATACCGCATCGAGTTCCTGCACAGCTTCAACCGCG
ATGAAGTGGCCGACGAAGACCTATTCAACCCAGCAGTGTACCCAGTATCA
GCAGAAGATTCAACCCAGCAGTGTACCCAGTATCAGCAGAAGATCACGAG
GAGCTGGCCGCGGCAGAAGCCTTCAACCGCGAGATGGCAGAGCTGGAGGA
TCTAGAGCACCAGCAAGAGCTGCGCTCGCTACTTCAAGACCGGATCGCAG
ATCACGAGGAGCTGGCCGCGGCAGAAGCCTTCAACCGCGAGATGGCAGAG
CTGGAGGATCTAGAGCACCAGCAAGAGCTGCGCTCGCTACTTCAAGACCG
GATCGCAGCTCTCCAGCACGGGGTAGCGAACCAGAGACCAGCCAAGATCG
CATCCATCAACGGCGGCGTCTTCTCCGGACGCTCGAGGGATGCGCTCTCC
AGCACGGGGTAGCGAACCAGAGACCAGCCAAGATCGCATCCATCAACGGC
GGCGTCTTCTCCGGACGCTCGAGGGATGCG
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