mRNA_S-dermatodea_contig11109.728.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11109.728.1
Unique NamemRNA_S-dermatodea_contig11109.728.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11109.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11109contigS-dermatodea_contig11109:4412..5528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11109.728.1prot_S-dermatodea_contig11109.728.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11109 4518..5471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.9819517-UTR-S-dermatodea_contig11109:4411..45171622924187.9819517-UTR-S-dermatodea_contig11109:4411..4517Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11109 4412..4517 -
1694079078.5898643-UTR-S-dermatodea_contig11109:4411..45171694079078.5898643-UTR-S-dermatodea_contig11109:4411..4517Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11109 4412..4517 -
1622924188.0154853-UTR-S-dermatodea_contig11109:5471..55281622924188.0154853-UTR-S-dermatodea_contig11109:5471..5528Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11109 5472..5528 -
1694079078.617999-UTR-S-dermatodea_contig11109:5471..55281694079078.617999-UTR-S-dermatodea_contig11109:5471..5528Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11109 5472..5528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.9979928-CDS-S-dermatodea_contig11109:4517..46171622924187.9979928-CDS-S-dermatodea_contig11109:4517..4617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 4518..4617 -
1694079078.6007547-CDS-S-dermatodea_contig11109:4517..46171694079078.6007547-CDS-S-dermatodea_contig11109:4517..4617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 4518..4617 -
1622924188.007023-CDS-S-dermatodea_contig11109:5367..54711622924188.007023-CDS-S-dermatodea_contig11109:5367..5471Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 5368..5471 -
1694079078.6093144-CDS-S-dermatodea_contig11109:5367..54711694079078.6093144-CDS-S-dermatodea_contig11109:5367..5471Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11109 5368..5471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11109.728.1

>prot_S-dermatodea_contig11109.728.1 ID=prot_S-dermatodea_contig11109.728.1|Name=mRNA_S-dermatodea_contig11109.728.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
MISAPRLVVLKTNPERRQQRCKRMVIPNRMPNQLRSNAERCLCFRGDEGD
KRHNRSGYKNSGRLRME*
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mRNA from alignment at S-dermatodea_contig11109:4412..5528-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11109.728.1 ID=mRNA_S-dermatodea_contig11109.728.1|Name=mRNA_S-dermatodea_contig11109.728.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1117bp|location=Sequence derived from alignment at S-dermatodea_contig11109:4412..5528- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATATTACTCCGCTTCCAGTGGGATAGCCAATCATGATTATGATACGAGTC
GCACATCATGATCAGTGCGCCAAGGCTGGTGGTGTTGAAGACGAATCCGG
AACGCCGGCAACAGAGATGCAAGCGCATGGTCATTCCCAACCGAATGCCC
AACCAACTGAGGTAAGCGTCTAGCACGGCACTGCCCTAAACATGCAAGCT
CCAAGCTACCCCTATGGGTCTTGAAGCCTCCAATTCTTCGAAACGAGTCG
GCACAAACTGAAGAATAACAATTCGATTATTCGGGCGGGGGCACTATGCC
GTACTCGGCCGTTGCATCGATTGTTTAGACCTGAGCGGAGATACGCTAAT
CGGCAGCTTCAACGCATGTGGCACCACCTTCCTCCCACTCCCCCCAATCC
GAAACCTCCATCGCTATTCATGATGCATAGGTTGTTCTCCCAATCCCACC
ATGTTTGAGGGCCGTCTGCACCCTGCGCCGCTCTTCAGATGGATGTGTAC
GTGACACATACGCCCGTAAAGAGTATTGTGTCCACCGCGCGGGCTATTTC
CGGGGTCGTGCGCTGGCTTGACCCCCGTTCAGACGAAGTGGTTTCTCGCC
AGCAATTGACGATTGAGGTGGCCGCTGTCCGACATGTTGCCATGTTGCCC
TCTAAACAGACAGTTTTTCCTGCTTAACCCCATTAGACGCCTGCACAACT
AAATCTATTTTTTTCACACCTCCTCAAACGCCTCTCTTGCGGTGTTATTT
TTTGCGCGCGTTGCTCCGACGGGGCAACACTACTGTAACCTCCCGGCAAT
ATGCGCTCGTTGAGTTGACGCGCGAACATTTTCCATGCCCTGCTGTTGCT
CCCCACCTCACATATCCGCTTGCCCAACCGCGTTTGTCGTGCCTATATAC
CGCTGAAACAGGTCCAATGCCGAGCGTTGCCTCTGTTTTCGCGGAGACGA
GGGCGACAAAAGACATAACCGTTCTGGGTATAAGAACAGTGGAAGGCTGA
GAATGGAGTGACTTTATTATTAGGGGAGGAAATGCTCAACCGCGTGGGGG
GAACAGCATGGGATCACCGGACACTTTCGCGTGCGAACACCGGCGTTTTT
GACTTTTGGGCGTCAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11109:4412..5528-

>mRNA_S-dermatodea_contig11109.728.1 ID=mRNA_S-dermatodea_contig11109.728.1|Name=mRNA_S-dermatodea_contig11109.728.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig11109:4412..5528- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCAGTGCGCCAAGGCTGGTGGTGTTGAAGACGAATCCGGAACGCCG
GCAACAGAGATGCAAGCGCATGGTCATTCCCAACCGAATGCCCAACCAAC
TGAGATGATCAGTGCGCCAAGGCTGGTGGTGTTGAAGACGAATCCGGAAC
GCCGGCAACAGAGATGCAAGCGCATGGTCATTCCCAACCGAATGCCCAAC
CAACTGAGGTCCAATGCCGAGCGTTGCCTCTGTTTTCGCGGAGACGAGGG
CGACAAAAGACATAACCGTTCTGGGTATAAGAACAGTGGAAGGCTGAGAA
TGGAGTGAGTCCAATGCCGAGCGTTGCCTCTGTTTTCGCGGAGACGAGGG
CGACAAAAGACATAACCGTTCTGGGTATAAGAACAGTGGAAGGCTGAGAA
TGGAGTGA
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