mRNA_S-dermatodea_contig11101.724.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11101.724.1
Unique NamemRNA_S-dermatodea_contig11101.724.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Match: D7G0L7_ECTSI (DUF155 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0L7_ECTSI)

HSP 1 Score: 530 bits (1366), Expect = 5.850e-184
Identity = 283/383 (73.89%), Postives = 295/383 (77.02%), Query Frame = 2 
Query:    2 RLYAGFPHRFEKHCVVIGPLDPNCFDGGYPKPRDPSEGLGQVLRDLSNRKG-----------------------------PDMGDGAPGSGKLEEAERRPFVAPP-PFTVDGPEYRPRAWDMWEPGGASRPEQRG------GAGFARV-RDTSNSYVVLFDYGSVVFLHFGQEQQEVHLQRQRDFLYEENKIPLNGVKAETHGVVLWSTLPEPARLEPDCTTLRELDVNHITIIGTVLAQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLMNFKPF 1039
            RLYAGFP  FEKHCVVIGPLDPNCF+GGYP PRDPSEG   V RDLS  K                              PD  D        EE  RRPFV PP PF +DGP Y+ RAWDMWEPGG       G      G G  RV ++  NSYVVLFDYGSVVF+HF +EQQE HL RQR+FLYEE+KIP   VK ++HGVVLWSTLPEPARLEPD TTLRELDVNHITIIGTVL QTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILER EAAWK  DYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDL+N KPF
Sbjct:  177 RLYAGFPRSFEKHCVVIGPLDPNCFEGGYPSPRDPSEGFNGVFRDLSRLKSKKSLNAXXXXXXXXXXXXXXXXXXXXXXHPDRDDDE------EELGRRPFVPPPRPFAMDGPAYQARAWDMWEPGGGEGGTGAGLRVLGVGMGGRRVGKEAGNSYVVLFDYGSVVFIHFTKEQQEAHLSRQREFLYEESKIPPGDVKTDSHGVVLWSTLPEPARLEPDRTTLRELDVNHITIIGTVLGQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERQEAAWKDPDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLLNVKPF 553
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BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Match: A0A7S2G731_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G731_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.130e-63
Identity = 117/229 (51.09%), Postives = 155/229 (67.69%), Query Frame = 2 
Query:  350 NSYVVLFDYGSVVFLHFGQEQQEVHLQRQRDFLYEENKIPLNGVKAETHGVVLWSTLPEPARLEPDCTTLRELDVNHITIIGTVLAQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLMNFKP 1036
            N ++V+FDYGSVVF +F   + +  L+  R F  E   I       E + ++    L E   L+ D T L+ELD +  T+I TV+AQTVALDHY  LVD M+  F   N  VE+TG+FTA +K +LF++VA+NN V  DVISKL +LERS+ AWK   Y +VWEGLREEFE+D R   ++ KL+++Q NT FF+E++HNQKS MLEW IIVLI+AEIV+   DL +FKP
Sbjct:  130 NRHMVVFDYGSVVFFNFDDLELQQRLKELRRFCVE--PIAQEVQMTEDYTLIERPHLRESCVLQNDLTILKELDFHSATVISTVMAQTVALDHYSALVDQMLEIFTEFNHTVERTGQFTAIEKNDLFKMVAQNNAVLIDVISKLSLLERSDTAWKMPQYVHVWEGLREEFEVDQRFENLKFKLNLIQDNTKFFLEIMHNQKSNMLEWVIIVLISAEIVLCSMDLCDFKP 356
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BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Match: A0A7S3Y0X5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0X5_HETAK)

HSP 1 Score: 207 bits (528), Expect = 2.310e-59
Identity = 104/228 (45.61%), Postives = 157/228 (68.86%), Query Frame = 2 
Query:  353 SYVVLFDYGSVVFLHFGQEQQEVHLQRQRDFLYEENKIPLNGVKAETHGVVLWSTLPEPARLEPDCTTLRELDVNHITIIGTVLAQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLMNFKP 1036
            S+  +F YGSVVF +   EQ    L+    F      IP +    + H +++  +L +  + + + + +RE++  ++ +IG VL QTVAL+HY  +VD M+  F  +NS VE+TGKFTA + ++LF+LVARNN++  DVISK+G+LERSE AWKH +++ ++EGLREEF++++R   +E KL ++Q NT FF+E+LHN KST LEW II+LI AEI+V +CD+  +KP
Sbjct:  173 SHTAIFKYGSVVFFNCSDEQIRKQLKDIEKFC--SGSIPTSFQHKDDHTIIIEPSLTKACQSQRNHSIVREINYKNLAVIGRVLGQTVALNHYEAMVDHMLEDFNRLNSVVEQTGKFTAMETQKLFKLVARNNSIFVDVISKVGLLERSETAWKHSEFDELFEGLREEFDLETRFANLEVKLGLIQNNTKFFLEILHNAKSTSLEWIIIILILAEIIVALCDMFGYKP 398
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BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Match: A0A7S3NK34_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK34_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.050e-53
Identity = 96/165 (58.18%), Postives = 126/165 (76.36%), Query Frame = 2 
Query:  545 DCTTLRELDVNHITIIGTVLAQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLMNFKPF 1039
            D   L  LDV++I++I TV+AQTVALDHY   VD+M++ F  +NS VEKTG F + +K  LF+LVA NNT+ TDVI+K+G+LERSE AW++ +Y  +WEGLR+EFE++ R  KIE KL+++Q NT FF+E+L NQKS  LEW IIVLI+ EIVVG CDL   +PF
Sbjct:  310 DAVVLPRLDVHNISVIATVMAQTVALDHYSVKVDAMLATFSRLNSNVEKTGIFDSLEKNNLFKLVALNNTLFTDVIAKIGLLERSETAWRNLEYTQIWEGLRDEFEVEDRFEKIEFKLNLVQLNTKFFLEILANQKSNTLEWIIIVLISLEIVVGTCDLCGIQPF 474
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BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Match: D8SFQ0_SELML (DUF155 domain-containing protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SFQ0_SELML)

HSP 1 Score: 182 bits (462), Expect = 3.580e-52
Identity = 101/224 (45.09%), Postives = 151/224 (67.41%), Query Frame = 2 
Query:  356 YVVLFDYGSVVFLHFGQEQQEVHLQRQRDFLYEENKIPLNGVKAETHGVVLWSTLPEPARLEPDCTTLRELDVNHITIIGTVLAQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLMN 1027
            Y+V++ YGSVV  +FG E++   L   R +  EE   P    K E +GV++  TL E +    D   LR+ D+++I II +VLAQ++ALD++  LVD M++ F  +N G+E+TG FT  +KK LFQLVA  N    DVI ++G+LERS+AAWK+ +Y  V+E +REEFE++ R + +  KL+++Q N   F+E+L N+KS +LEW II+L+A EI VGV D+++
Sbjct:    2 YMVVYQYGSVVLFNFGDEEETEFLNVVRKYCKEEFGKP----KKEDYGVLIRPTLSEWSHGSHDIIMLRKFDIDNIRIIASVLAQSIALDYFAKLVDEMINVFSELNRGMERTGTFTMTRKK-LFQLVASANFTLADVIVRMGLLERSDAAWKNINYARVFEFMREEFELNERFKSLHFKLNIIQHNVRLFLEVLQNRKSDILEWIIILLLAGEIGVGVYDILH 220
[Close]
BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Match: D8T9E4_SELML (DUF155 domain-containing protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T9E4_SELML)

HSP 1 Score: 182 bits (462), Expect = 3.580e-52
Identity = 101/224 (45.09%), Postives = 151/224 (67.41%), Query Frame = 2 
Query:  356 YVVLFDYGSVVFLHFGQEQQEVHLQRQRDFLYEENKIPLNGVKAETHGVVLWSTLPEPARLEPDCTTLRELDVNHITIIGTVLAQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLMN 1027
            Y+V++ YGSVV  +FG E++   L   R +  EE   P    K E +GV++  TL E +    D   LR+ D+++I II +VLAQ++ALD++  LVD M++ F  +N G+E+TG FT  +KK LFQLVA  N    DVI ++G+LERS+AAWK+ +Y  V+E +REEFE++ R + +  KL+++Q N   F+E+L N+KS +LEW II+L+A EI VGV D+++
Sbjct:    2 YMVVYQYGSVVLFNFGDEEETEFLNVVRKYCKEEFGKP----KKEDYGVLIRPTLSEWSHGSHDIIMLRKFDIDNIRIIASVLAQSIALDYFAKLVDEMINVFSELNRGMERTGTFTMTRKK-LFQLVASANFTLADVIVRMGLLERSDAAWKNINYARVFEFMREEFELNERFKSLHFKLNIIQHNVRLFLEVLQNRKSDILEWIIILLLAGEIGVGVYDILH 220
[Close]
BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Match: A0A2K1J4Y1_PHYPA (DUF155 domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1J4Y1_PHYPA)

HSP 1 Score: 190 bits (482), Expect = 6.620e-52
Identity = 102/234 (43.59%), Postives = 149/234 (63.68%), Query Frame = 2 
Query:  323 GFARVRDTSNSYVVLFDYGSVVFLHFGQEQQEVHLQRQRDFLYEENKIPLNGVKAETHGVVLWSTLPEPARLEPDCTTLRELDVNHITIIGTVLAQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLM 1024
            GFA +  +   Y+V F YGS+VF +FG +++E  L   R F  +E        + + +GV++  TL + +    D   LR LD ++I +I ++L Q++ALDHY   VD M++ F  +N G+EKTG FT  +K  LFQLVA  NT   DVI +LG+LERS+AAWK  +Y  +WE LR++FE+D R   ++ KL+++Q N  FF+E+L N+KS  LEW II+LI  EI VGV  ++
Sbjct:  282 GFAEISRSQERYMVAFQYGSIVFFNFGDDEEEEALAAVRKFCTDE----FRETRKDDYGVLVRPTLRQWSEGGQDRIMLRMLDTDNIRVISSILGQSIALDHYAKKVDEMVNTFSELNRGMEKTGTFTMTRK-SLFQLVAAANTTLADVILRLGLLERSDAAWKDANYAQIWEYLRDDFELDERFESLDFKLNIIQHNVRFFLEILQNRKSDTLEWIIILLITGEICVGVYQIL 510
[Close]
BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Match: A4RYT8_OSTLU (DUF155 domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RYT8_OSTLU)

HSP 1 Score: 181 bits (458), Expect = 9.770e-51
Identity = 98/227 (43.17%), Postives = 146/227 (64.32%), Query Frame = 2 
Query:  356 YVVLFDYGSVVFLHFGQEQQEVHLQRQRDFLYEENKIPLNGVKAETHGVVLWSTLPEPARLEPDCTTLRELDVNHITIIGTVLAQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLMNFKP 1036
            Y+V+F +GSVVF + G +++E  L+  R F       PL     + + VV+  TL + A LE D   L+ +D+N+I++I +VLAQTVAL+HY   VD M+  F  +N   E TG    + KK LF LVA NN   T++I+KLG+L RS+ AW++  YN VWEGLR++FE++ R + ++ KL+++Q    F++E+L N+KS  LEW IIVLI+ EI V + D+ +  P
Sbjct:   63 YLVVFKFGSVVFYNMGHKEREECLKLARSF----TSTPLAVPMTDDYRVVVRPTLTDWASLESDHIVLKRMDINNISVISSVLAQTVALEHYEQKVDGMVEIFSKLNKSTELTGDLNIS-KKRLFSLVAENNNTLTELITKLGLLGRSDTAWQYAQYNIVWEGLRQDFELEDRFQDLDYKLNLIQTQVKFYLEILQNRKSDALEWIIIVLISLEICVSLYDMADKIP 284
[Close]
BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Match: A0A2R6WTI2_MARPO (DUF155 domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WTI2_MARPO)

HSP 1 Score: 184 bits (467), Expect = 2.050e-49
Identity = 97/224 (43.30%), Postives = 146/224 (65.18%), Query Frame = 2 
Query:  356 YVVLFDYGSVVFLHFGQEQQEVHLQRQRDFLYEENKIPLNGVKAETHGVVLWSTLPEPARLEPDCTTLRELDVNHITIIGTVLAQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLMN 1027
            Y+V F YGSVVF +FG  ++   L   R +  +E        + + +GV++  TLPE +    D   LR+LD+++I +I ++L Q++ALDHY   VD M++ F  +N G+E+TG FT  +K  LFQLVA  NT   DVI +LG+LERS+AAWK  +Y  +WE +R++FE+D R   ++ KL+++Q N  FF+E+L N+KS  LEW II+LI  EI V + D+++
Sbjct:  334 YMVAFQYGSVVFFNFGDHEEVESLDIVRKYCSDE----FRETRKDDYGVLVRPTLPEWSEGGHDRVMLRKLDIDNIRVISSILGQSIALDHYAKKVDEMVTTFSELNRGMEQTGTFTMTRK-SLFQLVAAANTTLADVILRLGLLERSDAAWKDANYAQIWEYMRDDFELDERFESLDFKLNIIQHNVRFFLEILQNRKSDTLEWIIILLITGEICVSLYDILH 552
[Close]
BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Match: A0A7S2W1Z6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1Z6_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.950e-49
Identity = 90/197 (45.69%), Postives = 129/197 (65.48%), Query Frame = 2 
Query:  380 SVVFLHFGQEQQEVHLQRQRDFLYEENKIPLNGVKAETHGVVLWSTLPEPARLEPDCTTLRELDVNHITIIGTVLAQTVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVRTDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQQNTNFFIEMLHNQKSTMLEW 970
            SVVF +F   + + HL   +  L+    IP      E + +V    L +   L  D T LR +D++  T++ TV+AQTVALDHY ++VD M+  F   N  VEKTG+FTA +K  LF+LVA+NN +  DV++KL +LERS+ AW+  +Y  VWEGLR+EFE++SR   ++ KL ++Q+NT FF+E++HNQKS  LEW
Sbjct:    1 SVVFFNFSDAEIQGHLMDVK--LFTSEPIPREFQMTEDYTLVERPYLQQSCVLHTDLTILRAVDLHSATVVSTVMAQTVALDHYSNVVDQMLEVFQKFNHSVEKTGQFTAIEKTSLFRLVAQNNAILIDVLAKLALLERSDIAWRMPEYVSVWEGLRDEFEVESRFNNLKYKLGLIQENTKFFLEIMHNQKSNSLEW 195
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11101.724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0L7_ECTSI5.850e-18473.89DUF155 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S2G731_9STRA1.130e-6351.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3Y0X5_HETAK2.310e-5945.61Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3NK34_9STRA2.050e-5358.18Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
D8SFQ0_SELML3.580e-5245.09DUF155 domain-containing protein (Fragment) n=2 Ta... [more]
D8T9E4_SELML3.580e-5245.09DUF155 domain-containing protein (Fragment) n=1 Ta... [more]
A0A2K1J4Y1_PHYPA6.620e-5243.59DUF155 domain-containing protein n=2 Tax=Physcomit... [more]
A4RYT8_OSTLU9.770e-5143.17DUF155 domain-containing protein n=1 Tax=Ostreococ... [more]
A0A2R6WTI2_MARPO2.050e-4943.30DUF155 domain-containing protein n=3 Tax=Marchanti... [more]
A0A7S2W1Z6_9STRA2.950e-4945.69Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11101contigS-dermatodea_contig11101:875..6987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score464.5
Seed ortholog evalue3.6e-128
Seed eggNOG ortholog2880.D7G0L7
Preferred nameRMD1
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0008150,GO:0008152,GO:0010467,GO:0012505,GO:0016020,GO:0031090,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0098588,GO:0098805,GO:0098852,GO:0140053
EggNOG free text desc.PFAM Uncharacterised ACR, YagE family COG1723
EggNOG OGsCOG1723@1,KOG2861@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF155
Ec32 orthologEc-06_007250.1
Exons8
Model size1150
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11101.724.1prot_S-dermatodea_contig11101.724.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11101 977..6827 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.7017226-UTR-S-dermatodea_contig11101:874..9761622924187.7017226-UTR-S-dermatodea_contig11101:874..976Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11101 875..976 -
1694079078.3606796-UTR-S-dermatodea_contig11101:874..9761694079078.3606796-UTR-S-dermatodea_contig11101:874..976Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11101 875..976 -
1622924187.7996416-UTR-S-dermatodea_contig11101:6827..69871622924187.7996416-UTR-S-dermatodea_contig11101:6827..6987Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11101 6828..6987 -
1694079078.466762-UTR-S-dermatodea_contig11101:6827..69871694079078.466762-UTR-S-dermatodea_contig11101:6827..6987Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11101 6828..6987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.7118037-CDS-S-dermatodea_contig11101:976..10701622924187.7118037-CDS-S-dermatodea_contig11101:976..1070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 977..1070 -
1694079078.3788261-CDS-S-dermatodea_contig11101:976..10701694079078.3788261-CDS-S-dermatodea_contig11101:976..1070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 977..1070 -
1622924187.7227008-CDS-S-dermatodea_contig11101:2380..24921622924187.7227008-CDS-S-dermatodea_contig11101:2380..2492Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 2381..2492 -
1694079078.3904843-CDS-S-dermatodea_contig11101:2380..24921694079078.3904843-CDS-S-dermatodea_contig11101:2380..2492Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 2381..2492 -
1622924187.732548-CDS-S-dermatodea_contig11101:3077..32251622924187.732548-CDS-S-dermatodea_contig11101:3077..3225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 3078..3225 -
1694079078.4069653-CDS-S-dermatodea_contig11101:3077..32251694079078.4069653-CDS-S-dermatodea_contig11101:3077..3225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 3078..3225 -
1622924187.7431955-CDS-S-dermatodea_contig11101:3387..34711622924187.7431955-CDS-S-dermatodea_contig11101:3387..3471Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 3388..3471 -
1694079078.4173503-CDS-S-dermatodea_contig11101:3387..34711694079078.4173503-CDS-S-dermatodea_contig11101:3387..3471Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 3388..3471 -
1622924187.758319-CDS-S-dermatodea_contig11101:4082..41581622924187.758319-CDS-S-dermatodea_contig11101:4082..4158Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 4083..4158 -
1694079078.4276419-CDS-S-dermatodea_contig11101:4082..41581694079078.4276419-CDS-S-dermatodea_contig11101:4082..4158Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 4083..4158 -
1622924187.767381-CDS-S-dermatodea_contig11101:5302..54181622924187.767381-CDS-S-dermatodea_contig11101:5302..5418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 5303..5418 -
1694079078.4379003-CDS-S-dermatodea_contig11101:5302..54181694079078.4379003-CDS-S-dermatodea_contig11101:5302..5418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 5303..5418 -
1622924187.7757304-CDS-S-dermatodea_contig11101:6069..63091622924187.7757304-CDS-S-dermatodea_contig11101:6069..6309Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 6070..6309 -
1694079078.4480593-CDS-S-dermatodea_contig11101:6069..63091694079078.4480593-CDS-S-dermatodea_contig11101:6069..6309Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 6070..6309 -
1622924187.7853038-CDS-S-dermatodea_contig11101:6809..68271622924187.7853038-CDS-S-dermatodea_contig11101:6809..6827Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 6810..6827 -
1694079078.4577398-CDS-S-dermatodea_contig11101:6809..68271694079078.4577398-CDS-S-dermatodea_contig11101:6809..6827Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11101 6810..6827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11101.724.1

>prot_S-dermatodea_contig11101.724.1 ID=prot_S-dermatodea_contig11101.724.1|Name=mRNA_S-dermatodea_contig11101.724.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=296bp
MGDGAPGSGKLEEAERRPFVAPPPFTVDGPEYRPRAWDMWEPGGASRPEQ
RGGAGFARVRDTSNSYVVLFDYGSVVFLHFGQEQQEVHLQRQRDFLYEEN
KIPLNGVKAETHGVVLWSTLPEPARLEPDCTTLRELDVNHITIIGTVLAQ
TVALDHYGDLVDSMMSKFVAINSGVEKTGKFTAAQKKELFQLVARNNTVR
TDVISKLGILERSEAAWKHQDYNYVWEGLREEFEMDSRLRKIESKLSMLQ
QNTNFFIEMLHNQKSTMLEWTIIVLIAAEIVVGVCDLMNFKPFAK*
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mRNA from alignment at S-dermatodea_contig11101:875..6987-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11101.724.1 ID=mRNA_S-dermatodea_contig11101.724.1|Name=mRNA_S-dermatodea_contig11101.724.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6113bp|location=Sequence derived from alignment at S-dermatodea_contig11101:875..6987- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGTTATACGCGGGGTTTCCCCACCGCTTCGAGAAGCATTGCGTGGTAA
TCGGACCACTTGATCCGAATTGCTTCGACGGAGGCTACCCCAAGCCACGT
GACCCCTCGGAGGGCTTGGGCCAGGTTCTCCGAGACCTGTCGAATCGAAA
GGGTCCTGACATGGGTGATGGAGCGCCGGTGAGGAGCCACTTCCAATCCA
ATAGGTTTGGAATGTGCGGTCCTATAGACACGGCTCTATATACTATGTTA
GAGCTTTTACACTTCATGCAAAACTTGGCGATCTTTGAAACAACGACGGT
TTTGCGTAAGGAGGGAGGAATTGGCGTGTACGCGGCTCGAGCGGCCGACG
CAGCAGCGTCCGTCCTGGAGGCCTTTCGCGTCTGTGTATTGTACGCGTTG
CTAGCAGAAGTTAAGGGCAGTCAAGAGTTGGCCAACGCCAAGCCGCAAGG
CACGAGCATGTGATCGAGCTCTAAGTAACACGTACCTGGAATAATTGTTG
TTTTTCGGCCGATCGTTGTGCCCCCCGCCCGCTGGATTCCGGCTATATCA
CGAGTTTCAGGGTAGATCGAAAGCAAGATAAACTCACCTAAAGCACATGT
GCCGCAGGCGCCCATGGAAGGCTTGCCACGACCCCGGCCCCTCACCTCGA
CACGCTTGGTTTTTTATTTCGCCGCAAGGGGTCAGGAAAACTCGAGGAAG
CCGAGCGCCGCCCGTTCGTCGCACCTCCCCCCTTCACGGTGGACGGCCCG
GAGTACCGACCGAGAGCGTGGGATATGTGGGAGCCGGGGGGCGCCTCTCG
GCCTGAGCAGCGGGGCGGCGCCGGATTCGCGAGGGTGAGGGACACGAGCA
ATAGCTATGTGGTGTTGTTCGACTACGGGAGCGTGGTCTTCTTGCACTTT
GGTCAGGAGCAGCAAGAGGTGAGCGTGGAGGAGGGGGGGGGGGGGGGCTC
ATGTTGTGCACATGTCGGATCCAAACAGACATAGTCCCGCGCATCCCAAC
AATGCCGGGACGGAGCGGTATGTCGGGGTTTCGCTGACCAGGCTGCGTTT
CACAACGATGATACCAGCTGCAAGTCGTCATCCTTGCGTTTGCGACGCCA
AACCGGATTGCAATGGGTTGCCTGGACATGCCGGGTAGTGTGCTTGAAGA
GGCGGGGTTGGGTCTATTTCCGTTGGTGGAGGCTGTACTGTAACGCGCAT
GCAACGCCCGACAGCACATCGGCGTGTATCGATCGTATAACTCGACAAGG
GCCGCAATCGCCCTGCAGATATCTTTGTAAAGTGATCGCTCTAGACTCGA
CGGAGCAGGCGCGAGGAAGGCACTGGCGGGGAGGGCGAACACTGCTGCCA
ATTTTACGAGTTGCGCCATGCCCAACCGTACCGATGGACTGTCAAATGAA
TATGCATATTATGTCGGACGCACGTGCAGATCCTGTAGCGGAGGGCCCGA
ATGCCCCCGATTACAGTTTCTGTAGGCGCTCTTATTCCCTGCCATGCCAT
CGAGTCCCGCTCCCCTCCCTTACCCTTCCTCCACCCGTTCGCCCGGCTTT
GCCCTGCGGCCGTGCCAAGGTGCATTTGCAACGACAGCGAGACTTCTTGT
ACGAAGAGAACAAGATACCGCTCAACGGCGTCAAGGCCGAGACGCACGGC
GTGGTGTTGTGGTCAACCTTACCGGAGCCAGCGAGGTGCGGGTGTGCGGC
AGGCAGGGGGGGGGGGGGGGGCGGGGAAGGGGACCGCTTCTCCTGCCGTG
GTATCAGATCTCGCACGATTTTGATATCGATACTCTCGCTGGATATCACA
TCTATGAAGATCATTTTGTTGCCTCCGTGTCAAATCGCTGTTTGGGCCGT
CTGGGTCGATTCGCACGAAATGAGTGGTATGTCACCGGTCAATAATTTTT
GTTTAAAACAAAATTTGTACAGTAGTAGCAATGGGGAATGGTTGTGGGCC
CAAGTATATCACCCCCCTGGTTTCTCTGTTTCATAATTGCCGTTATCCAA
AATTCAGTCCACATAAATCCGACTCCAACCCAAACCATCCCAAGCCCTTC
TCTTTCCGTTATTCTTTAGTCTACGGGCGAACCCACCGGTTGATTTATTG
ATTGATTGATTGATTGATTATAACGCTTGCAACCGACCGGCCCAACAATG
GTTGCCGATCCCGCTTGTGGTCAATTGAGAAATCGAGAGATGGGGGAGAA
CAAAAAAACCCGACGGAATTACCTATCTATGAGTACATAAAGAGAAGGAT
TGAACTTTTCCCCCAGAATCCTGTTAGGAAACCGTTGTGCCAGCTATCTC
CTGGAGTCCTCATCGATTATCTTCTACTCCTTCCCCGTGTTGCGCGTTTA
AACCCTTCGGGGAATGGCGTCGTTTTCGGGGACATGTGCCCGCACCGTAG
TTCACATCAAACAAACAGTAACCTATGATCGACGTCCGGGCTGTCCTAGA
CGACCACCACAAACCGAACAAGCCGTGGCGGAGGAAAAGCGATGCAAGTA
TGTACCCTGTCGCTGTTAGCTTGCATGCGCTTTGCATCTCCGCTTGCACG
CGTCACTCGCGATACGTACACGCGTGGAGACGACACTCCGGCATCGCGCT
TCAGATCAGTATTGCCGTAACCGTGAAGGAAGGGAGCTTTCAGTAGCGCG
GACAACCCGCTTCCACGGTCTCGGTAAGAAGCTTAGCCCCTGAAAAAACA
AAGCATCAACCCCCCCCCCCCAACCCCCCCCCCCCCCCTCCCCCCTACAC
ACGCGCGCGTACGCATGACCTCTACGTGTTGTGGGTGCGTGTGTCTATTC
CGACACGGACGATTGGGTTCGAACGTCAGGCTCGAACCGGACTGCACTAC
TCTGCGAGAGCTCGACGTTAACCACATCACCATCATCGGAACCGTACTCG
CCCAGGTATGTGCGTGTGCGCGTGCGACGATAAGCCAGCACCCGCTTTTC
TCACAAGGCATGTTGGTGTGTACGCCTCACTTCGAAGGGCTTGCCGTTTT
GGAAGGACGCCCAAGGGGGGGGAGGGGGAGGGGGGGGGGCGCACCAAGCC
GTGACTTGTAAAAGGGACCCAGGGGCGGCTTTGTCGTGCTTGTACACAGA
TCCTATTTATTTTTATTTTTATTGTGGAACTTGAGAGGTGCCCGCGTTTT
CCTATCGAAAACAAACACCGTGTCCGTTGTCGCTCCGTGGGGTCGCTTTG
AATCGCGTCCTTGGTCGTTTCACGGGTGGCTTGAGCCCCCACCCCTGCCC
TGAAATCCACACTGTTATTTGGGCGATGACAGGACACGCTTCGCAGGGAC
GGTGTATTCGAGAACCGGGCTAGATTTGAGATGGTTTGTTGCCCTGCGAT
TCGCGCGGCTTCACTGTTGATTTTTGTCGCGTTTTGACCGCTCCTCGACT
CCCGCCCGCTGAGTAGCAAAGAACACTGTCGGCGCCAAGCGCCGACCACG
AACGTTCGCTCCTGCCATTTTGTCCGTGCCGTTGTTTTTGCTGGCGTTGC
ACGGACTCGTGTGCAGACGGTGGCGCTTGATCACTACGGCGACCTCGTGG
ACTCGATGATGTCCAAGTTCGTCGCCATTAACAGCGGCGTGGAAAAGACT
GTGAGTGGAAAACGCCTGCTTTGTTAAGAGAGCTAGCTGCCCATCCCATT
ATAGCCCTCCGTCGGAACACGCTTCCCTCGACATTGAGCGGTGAATCCTA
GCCCTTGAGCGCTAATGCCTGCTCACTCAAAAACCTTTCGCCGGCGCCGC
GTGTCCCGCCAGGGGAAGTTTACGGCGGCGCAAAAAAAGGAGCTCTTTCA
GCTGGTGGCCAGGAACAACACGGTGCGAACGGACGTGATCTCCAAGCTCG
GCATCCTCGAGAGGTCGGAGGCGGCCTGGAAGCACCAGGACTATAATTAC
GTGTGGGAGGGTGAGGACACCATAATTTTATAATTTTGTCCACTCGTTGT
CATCGCCATTGGTGGTGGTGGTGGTGGTATGCGTTAGGCTTGCCGCGCTT
GAAGCGCCGTTTAGACTGTGGCTCTTGAAGGGTGTCCGTGGGAGTGACGT
AAAATCTAGGTAATAGGAGTTGGGTTCAGCAGTTTTCAGGAATCTTGCCG
GTTCGCAACAAAGCAAGCCCCTTGGGGGGTTGGTGTGCGGAGTTAGGTCC
TTGCCATGTGGTACGTGCGTGAGGCGAGGCCACCTGTCGAATGCGGGTTG
CCTCAGGCTTCTATGCTCGCTACGGTCTTTTATTAACCCACGCTGTGGTG
CCGCTCCACCCAAGGCCTTCCTCTCCGGAGTACGCGAGCGTAGAGTTAGG
TATCGCCTGAATAGTGCGTTCTTGAGGAGGTCCTCTGCGCAGATGAAGGG
CAATGAAGCGACAGCTCTGGTCGTTCGGTGGGCGAGGACTGGTCAAGGAG
ATGCGATATTATTTGTTTCGTAAACGCGCCACCCTCCGCCCCTCCCTCCT
CGCTTGGGTAATCCTGCCCCATGTCTATTTGTGCCCACGAAACAGGCCTT
CGAGAAGAGTTCGAGATGGATAGCCGTCTCAGAAAGATAGAGTCCAAGCT
CAGCATGCTGCAACAAAATACGAACTTCTTCATCGAGATGCTTCATAACC
AAAAGAGGTGAGAGCTAATACGCGGTCGGAGCCAGTCCATCGGAAAACAC
AAAGTTGCACGTGACGCCCCTAAAAAATAAAAGATTTCAGAAACATAGAG
CGAGCGTTGGGGTCCCACCTTTTCAAGAGGGAGGATGGTCCAAGCTACAC
CTATGGAGGCTAGGCTCACTTGTTACATATGATGCTATGGTGTCTTATCA
TGTATGGTGTTTTATGGGTATGGTATCATACAGGACATGAGTCTTTGTCC
TACGCGACGCCCCGCCCCCCTTTCGTGCGCTTGGACCGCCATCTTGCGCA
TGTAGAGACCGTCCCCAAAAGGCGATATTGTACTGTGTTGCGGTATTTTG
TGGTACAATAAGGACTATAGTGTGTGGGTTTATGCAGTATTGTGAAGGCG
TGTTCCAAGCTATAACCGCCAGGAAGGCAAATTGGGCGTCTGTGCGTGGA
AGATTGATTCACTCTGTGTTTATCACACCTTAACCTCGCCACAAACGCTG
TAACTACAGCACACGAGCGACTGCTGTCACTCGCTGTACTGATTCAGTAA
CGCTGTTATACTGCACCCCAAGTTTTCTCTTACCATTTGACAATGAGCAC
TCCTCACAATAGAAAGGGGCATTGCCCACTCAAGAAACTAATACGCAGTT
CACACCAGTGTGCCCGTCGAGGACTATGTTGTACTACCCTCTTTTACTCG
TGTTATCTTGTCCCGGGACACCCCATAAGCACCCACTCCAGCAGGACCTT
TGTATCACACTCGTCGCTTCATTCTGTTGGGCCCATTGTTCGGCGCCTTG
GTTGATATTCGAAATAGTGATGACTACTTATAAGTGGGTAGTCACGGCTA
CGCCCGTGTGAGGTGTGCGTCGGCAGCTTCGGAGAAATATCCAATGTCTT
TTTGTCGGCTATCGGCCCCATTAGTATAGCATTTGGAATCCTCAAATCGG
CCTCAAATCGCAATTTTAAATCGCTATAATATTTACAATGGTTCCTTGTT
GCATTAAGTAATAAAGATACTCGATTCCTCTCTCGTCACATGACACTACT
GTACTATAGTTCCTTTTCCTCCGGCCGTTTCACGTTGTCTCAGGCGCTTG
CTTTTCCGTTTTCGAGGTGTTGTTGGCCCGTTCCTTCTCGAAAGCTCTCC
ACACAGGACGACGGGGATGCTGCCTGGCATCGACGTAAGACTTTGACGAC
TCGACAATCCATCCATTTAAACTCCCTCGTGAGACGTAGCTTCAACACCC
CCACCCACCCACCCACCCACCCACCCACCCGTCGCTTCGCGCATGGTGTG
TTTTGCGCCGATGACAGTACCATGCTGGAGTGGACGATCATCGTTCTCAT
CGCCGCAGAGATTGTAGTGGGGGTGTGCGATCTTATGAACTTCAAGCCCT
TCGCCAAATAATTGTTTGTGCGTCGAGGTGGGCTGACGAAGCCTCGATGT
ACTATTAATACATACAGTTGTACTAGTATATAGTTTGTGCGACTTCTCGA
TAGCGGAGGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11101:875..6987-

>mRNA_S-dermatodea_contig11101.724.1 ID=mRNA_S-dermatodea_contig11101.724.1|Name=mRNA_S-dermatodea_contig11101.724.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1776bp|location=Sequence derived from alignment at S-dermatodea_contig11101:875..6987- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGTGATGGAGCGCCGATGGGTGATGGAGCGCCGGGGTCAGGAAAACT
CGAGGAAGCCGAGCGCCGCCCGTTCGTCGCACCTCCCCCCTTCACGGTGG
ACGGCCCGGAGTACCGACCGAGAGCGTGGGATATGTGGGAGCCGGGGGGC
GCCTCTCGGCCTGAGCAGCGGGGCGGCGCCGGATTCGCGAGGGTGAGGGA
CACGAGCAATAGCTATGTGGTGTTGTTCGACTACGGGAGCGTGGTCTTCT
TGCACTTTGGTCAGGAGCAGCAAGAGGGGTCAGGAAAACTCGAGGAAGCC
GAGCGCCGCCCGTTCGTCGCACCTCCCCCCTTCACGGTGGACGGCCCGGA
GTACCGACCGAGAGCGTGGGATATGTGGGAGCCGGGGGGCGCCTCTCGGC
CTGAGCAGCGGGGCGGCGCCGGATTCGCGAGGGTGAGGGACACGAGCAAT
AGCTATGTGGTGTTGTTCGACTACGGGAGCGTGGTCTTCTTGCACTTTGG
TCAGGAGCAGCAAGAGGTGCATTTGCAACGACAGCGAGACTTCTTGTACG
AAGAGAACAAGATACCGCTCAACGGCGTCAAGGCCGAGACGCACGGCGTG
GTGTTGTGGTCAACCTTACCGGAGCCAGCGAGGTGCATTTGCAACGACAG
CGAGACTTCTTGTACGAAGAGAACAAGATACCGCTCAACGGCGTCAAGGC
CGAGACGCACGGCGTGGTGTTGTGGTCAACCTTACCGGAGCCAGCGAGGC
TCGAACCGGACTGCACTACTCTGCGAGAGCTCGACGTTAACCACATCACC
ATCATCGGAACCGTACTCGCCCAGGCTCGAACCGGACTGCACTACTCTGC
GAGAGCTCGACGTTAACCACATCACCATCATCGGAACCGTACTCGCCCAG
ACGGTGGCGCTTGATCACTACGGCGACCTCGTGGACTCGATGATGTCCAA
GTTCGTCGCCATTAACAGCGGCGTGGAAAAGACTACGGTGGCGCTTGATC
ACTACGGCGACCTCGTGGACTCGATGATGTCCAAGTTCGTCGCCATTAAC
AGCGGCGTGGAAAAGACTGGGAAGTTTACGGCGGCGCAAAAAAAGGAGCT
CTTTCAGCTGGTGGCCAGGAACAACACGGTGCGAACGGACGTGATCTCCA
AGCTCGGCATCCTCGAGAGGTCGGAGGCGGCCTGGAAGCACCAGGACTAT
AATTACGTGTGGGAGGGGGAAGTTTACGGCGGCGCAAAAAAAGGAGCTCT
TTCAGCTGGTGGCCAGGAACAACACGGTGCGAACGGACGTGATCTCCAAG
CTCGGCATCCTCGAGAGGTCGGAGGCGGCCTGGAAGCACCAGGACTATAA
TTACGTGTGGGAGGGCCTTCGAGAAGAGTTCGAGATGGATAGCCGTCTCA
GAAAGATAGAGTCCAAGCTCAGCATGCTGCAACAAAATACGAACTTCTTC
ATCGAGATGCTTCATAACCAAAAGAGGCCTTCGAGAAGAGTTCGAGATGG
ATAGCCGTCTCAGAAAGATAGAGTCCAAGCTCAGCATGCTGCAACAAAAT
ACGAACTTCTTCATCGAGATGCTTCATAACCAAAAGAGTACCATGCTGGA
GTGGACGATCATCGTTCTCATCGCCGCAGAGATTGTAGTGGGGGTGTGCG
ATCTTATGAACTTCAAGCCCTTCGCCAAATAATACCATGCTGGAGTGGAC
GATCATCGTTCTCATCGCCGCAGAGATTGTAGTGGGGGTGTGCGATCTTA
TGAACTTCAAGCCCTTCGCCAAATAA
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