|
|
Homology
BLAST of mRNA_S-dermatodea_contig111.721.1 vs. uniprot
Match: D7G6B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B1_ECTSI) HSP 1 Score: 201 bits (512), Expect = 7.510e-58 Identity = 149/363 (41.05%), Postives = 200/363 (55.10%), Query Frame = 1
Query: 16 GGNRFGYGA--PEMLAHRAGFQGGGFTPRPPVPSPIASSXXXXXXXXXXXXXXQVRRREGSAAEEVKEEPDDTALRPTDAERSSVEIIRKHGVPTDDAVLCLRQNGHNLPAALQQAIETVSNRTNCKMEDRARLESEMEKEKVAAQRREEDMTLSVLGDIEPRFQESLLLDENEGCRALRRGIQELRLGQDAWTTERSSFRENAVKLLFIEQNSLRWYREVEPQVRGYFRKLIGRLNEVVHQRETGAGKSDAAGAIVQTPPEPTRGARSTGDENQAANI-------QETEDLTACLKDEVETLEHILYMIPSTAGGVPDAFL-ACTDHAATLESDGVEEVCHQSADASRSRRSSDRVVVTVDD 1074
G N F Y A P+ L H AG F + ASS + R REG +A+EVKEEP+D LRP E V+++R+HGV T DAV CLRQ+G+ + AL+ A+E + R + D AR+ESE EK++ A Q++EED L VLG++ P F +S+LL+ +GC R+ ++ L G + FRE A+ LLF+E+++ R Y E + Q+R YF KLI R+ R+T + GA Q E + + S E +A +ETE LTA +++EVE L ILY P T GGVPDAFL H+ATLE DGVEE D SRS RS D VV+ VDD
Sbjct: 37 GANPFVYAAAAPQALPHAAGLNAR-FLAGSAMAHSGASSAGGASSGAPQRASPRARVREGPSAQEVKEEPEDP-LRPRPEEVGMVDMLRRHGVNTPDAVHCLRQSGNRVDVALRYAMEMKNTRHENRQTDMARVESEKEKDRAAEQQQEEDKILMVLGEVIPHFPKSILLNAEDGCTTFRQFVERLSAGDP----KLCDFRETAITLLFLERDAFRHYPENDRQIREYFGKLIERIQNHFTGRQT----EEVEGASSQGGTETAKRSSSCEREPRANRCGDSSERDEETESLTARVREEVEALRSILYGFPKTPGGVPDAFLDKQAAHSATLERDGVEE----DHDHSRSARSEDPVVIDVDD 385
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-10_001200.1 |
| Exons | 4 |
| Model size | 1089 |
| Cds size | 1089 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig111.721.1 >prot_S-dermatodea_contig111.721.1 ID=prot_S-dermatodea_contig111.721.1|Name=mRNA_S-dermatodea_contig111.721.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=363bp
MNGFFGGNRFGYGAPEMLAHRAGFQGGGFTPRPPVPSPIASSSAGASSAP
PLRAPPQVRRREGSAAEEVKEEPDDTALRPTDAERSSVEIIRKHGVPTDD
AVLCLRQNGHNLPAALQQAIETVSNRTNCKMEDRARLESEMEKEKVAAQR
REEDMTLSVLGDIEPRFQESLLLDENEGCRALRRGIQELRLGQDAWTTER
SSFRENAVKLLFIEQNSLRWYREVEPQVRGYFRKLIGRLNEVVHQRETGA
GKSDAAGAIVQTPPEPTRGARSTGDENQAANIQETEDLTACLKDEVETLE
HILYMIPSTAGGVPDAFLACTDHAATLESDGVEEVCHQSADASRSRRSSD
RVVVTVDDDVGD* back to topmRNA from alignment at S-dermatodea_contig111:32932..36466+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig111.721.1 ID=mRNA_S-dermatodea_contig111.721.1|Name=mRNA_S-dermatodea_contig111.721.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3535bp|location=Sequence derived from alignment at S-dermatodea_contig111:32932..36466+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATGGGTTCTTTGGGGGCAATCGTTTCGGGTATGGCGCCCCCGAAAT
GCTTGCTCATCGCGCGGGCTTCCAAGGCGGAGGGTTCACGCCGAGACCCC
CGGTGCCTAGTCCGATCGCTTCATCTTCGGCGGGAGCGTCCAGCGCCCCT
CCTCTACGGGGTAAGAACTAGAAGGTCCTCTCCGGCACAGTTGTCTCATG
CAGCCACTACTACTGTTTGTTGGTAACGCCGGACGCGGCAAGTATCATTC
ACAGCCCGTGTTGTCTTATTAGCCAGCGCCGGGGTGTCCGGAGCAAATGC
TCTGCAACCCATTTTAGAGCAAGTGCCGACCGTCGCGTCCCAATGTTGAC
CTGGTTGTCCTGGTGTCACGGTGTTCAAAATTGTTTGGCCCGATTTGAAT
TCCCCATCGTCGTATTTGTATGTACAACTTCACTATGATATGAACATGCA
GTACAGCAGTGTTCAAGTACACACTATAATACTATTAATACTGCTGTACA
CTTAATTTATCTACGCTGCCAGTTCAAATATCGGTCACCTCTATTATGTG
CAGTACCTGGTACTGTACTTGTGTTCTCTACTGCTTTAGGCATGTCATAC
GCTTATCTATTGTAGCTCTAGAGCTATTTGATACCATACGCAAACACCCA
CCACCCCTTCATCCGCCGCTCTCAGCCTTGACGCGTGCAACGGTTGCTGT
CCCACAACACATCCCACACCAATAAAAAACCAAGACATACGCGAACACGT
GCATCCGTGCATTGTTATTGTTTCATGCGGACTTTCTGGCTCCGTCATCA
AAGCAAGCGTTCTGCCGGCCGTGGTTTACAACAATACAACCGCGGCAATC
TGTACCGACCGTACTACTATGATACAGTTGTATCTATACGAAGTACTGGT
ATTGATCAGGGTATTAATTAGTTCGCAACAGCCAAATGAGACGTACTGTA
CAGTGTAGTAAGAGGTTGGAACATGTAGACTCTACAAATGTGGGCAGTAT
TTGCACCTGTAGCGGTTTTCCAGGCGGCACTCTCTTTTTAAATGAGGCTG
TTGGCGTTGCCTTTCTGCTGGTCCATGGTAGTCTCTATCTTTCGATTGGG
TGCCATGCTTGGGCGATTGGAGCCAGGATGAGCACTGCGGAATCACCCAC
GCGTGTTCAACCAAGCTGAACCGCACGTACATTTCCGTCGTTCCTGTCAC
GTTAAGCGAAGCTGGGGACTACCGCTACCCTAATGTAGACACACGGTCCT
TGCGTCTTTCCGACTGGATCTTGCATCAAATCCATCGGGTGTACACTGCA
CGCGCTGGGGTTTGCTTGATATTTTGTGCGTACCGCCTATAGTAGCTCTC
TAGTTTGTGTTGTACTTCATGGATAGCTACTTAGCATTCCGACGCAGCCA
CAGCTCTCGCCGCCTAGTTGCTACTGATTTGACCCACGATTAAGTTTGCA
TCTCTTGTTACCTGTCCGACGCAATATGTTTATATACAGTACAGACCGTT
CGCCATGACTATTGATACGCGGTTTGTTGACGGTGGTATCTCCCTCCCAC
CTTCATGCGCGATTATTCTGCTCCCCGACGTAGTAACAGAAGCCCCTCCT
CAAGTCCGGCGCCGTGAGGGCTCAGCTGCCGAAGAGGTTAAGGAAGAGCC
GGACGATACCGCTCTCCGCCCAACGGATGCAGAGCGCTCATCTGTAGAAA
TCATCCGCAAACACGGAGTACCCACGGACGACGCCGTCTTATGTCTGAGG
CAAAACGGACACAACTTGCCGGCGGCCCTTCAACAGGCGATAGAGACGGT
GTCAAATCGTACCAACTGCAAGATGGAGGATCGTGCCCGCCTCGAGTCTG
AAATGGAGAAGGAGAAAGTCGCAGCACAGCGACGAGAAGAGGACATGACC
CTCTCGGTCCTCGGCGATATCGAACCGCGATTCCAAGAGGTGCGTTGCGC
GTCGATGAAACTGTTATGCTGGAAGACATACGATTGCTTCGTCGGGCACA
AAGACACGTAGGATAGCTTGCTCGGCGGCAACCTTGTGAGTCTGCGCCCT
TCCAGTGAAAATATTACTTGAACGGACGTCGCCTCTTGGCCCTATAGTAC
TACCCCTAGCTGTGCTCGACTGTGTGGTGTTATTCGTGCCTATTACAGGT
GGGTGTTTTGATCTCGATATTTTACTAACATGTTCGGACTTTTAGTTTGC
CGTGCTCTTATTCTACGAACCCACGGACACCGGTACTACCCTTGATTCTC
GACAGTCGCTTCTCCTGGACGAGAATGAAGGATGCCGCGCGTTACGACGA
GGCATCCAAGAGCTTCGCTTGGGGCAGGACGCATGGACGACTGAGCGTTC
TTCTTTTCGGGAGAACGCGGTCAAGTTGCTTTTTATTGAGCAGAATTCCT
TGCGATGGTACCGCGAGGTTGAACCTCAGGTGCGTCGCCGATCCAACTCA
TAGGTTGTTTTGTCTTTAGGACGGGTCTAGCGGTGGCGAGAGAGTTACCA
AGTGGAGAAGCGGGAGATGTAACAAGCCTGTACCGATCCAGGCGCACGAT
GAAATGCCGTGTTCAATCGAACAAACATTTCCGTGTGCTTGAGGCGGCTA
CACACCGTGGCGACGGTAGGCGCGCTCCTTTTGTTTTCGTTCCGCGACAT
AATATCACATCATATCATGAATGCGCTTTGGTGACCTCGAGCTTGAGAAA
CGATTTCCATATTCATATCACGACCAGCGGCTCTTCTGTGCTCGTTCTGC
GTGGGTGAGATGCCTCTGCGGCGACATCGCGCGTACATTAAATCTCCAAC
CCCTAAAAAAATGGATATTTCAGAAACATAGAGCGAGCGTTCGGGTCCCA
CCTTTTCAAGAGGGAAGGTGTCTTATCATGTATGATGTTGTATGGTTATG
GTGTCATACAGGACGTGAGTTATTGTCCTGAACTATATCCTGATGATGTA
TCTTTGCTGCGTTTTCATGAGCCAGTAGTATTAAATATTCCTTTCCTACC
ACATACCGGTACTTTTATTGTATCTAGTATCTTGATTGCGCCTTTCTGGT
GTGTTTACATATCACATATCATAGTAAATCTTCAACCCCCCCCCACCCAC
ACCCACGCCTCTGACTTTTGAACCTAGGTCCGCGGATACTTCCGTAAACT
CATCGGACGGTTAAACGAAGTCGTCCACCAACGCGAAACCGGGGCCGGGA
AGAGCGACGCGGCAGGAGCTATTGTCCAGACGCCTCCAGAGCCCACGAGA
GGAGCTCGATCGACTGGTGACGAGAATCAAGCCGCCAACATCCAAGAAAC
AGAGGATTTGACAGCTTGCCTGAAGGACGAGGTCGAAACGTTAGAGCACA
TCTTGTACATGATCCCGAGCACGGCTGGCGGGGTGCCTGACGCGTTTCTC
GCGTGCACAGATCATGCAGCCACGTTGGAAAGCGACGGCGTGGAAGAAGT
GTGCCACCAGAGTGCCGACGCGAGCCGTTCGAGGAGAAGCAGCGATCGTG
TGGTCGTCACCGTTGACGATGACGTGGGCGACTGA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig111:32932..36466+ >mRNA_S-dermatodea_contig111.721.1 ID=mRNA_S-dermatodea_contig111.721.1|Name=mRNA_S-dermatodea_contig111.721.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2178bp|location=Sequence derived from alignment at S-dermatodea_contig111:32932..36466+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATGGGTTCTTTGGGGGCAATCGTTTCGGGTATGGCGCCCCCGAAAT
GCTTGCTCATCGCGCGGGCTTCCAAGGCGGAGGGTTCACGCCGAGACCCC
CGGTGCCTAGTCCGATCGCTTCATCTTCGGCGGGAGCGTCCAGCGCCCCT
CCTCTACGGGATGAATGGGTTCTTTGGGGGCAATCGTTTCGGGTATGGCG
CCCCCGAAATGCTTGCTCATCGCGCGGGCTTCCAAGGCGGAGGGTTCACG
CCGAGACCCCCGGTGCCTAGTCCGATCGCTTCATCTTCGGCGGGAGCGTC
CAGCGCCCCTCCTCTACGGGCCCCTCCTCAAGTCCGGCGCCGTGAGGGCT
CAGCTGCCGAAGAGGTTAAGGAAGAGCCGGACGATACCGCTCTCCGCCCA
ACGGATGCAGAGCGCTCATCTGTAGAAATCATCCGCAAACACGGAGTACC
CACGGACGACGCCGTCTTATGTCTGAGGCAAAACGGACACAACTTGCCGG
CGGCCCTTCAACAGGCGATAGAGACGGTGTCAAATCGTACCAACTGCAAG
ATGGAGGATCGTGCCCGCCTCGAGTCTGAAATGGAGAAGGAGAAAGTCGC
AGCACAGCGACGAGAAGAGGACATGACCCTCTCGGTCCTCGGCGATATCG
AACCGCGATTCCAAGAGCCCCTCCTCAAGTCCGGCGCCGTGAGGGCTCAG
CTGCCGAAGAGGTTAAGGAAGAGCCGGACGATACCGCTCTCCGCCCAACG
GATGCAGAGCGCTCATCTGTAGAAATCATCCGCAAACACGGAGTACCCAC
GGACGACGCCGTCTTATGTCTGAGGCAAAACGGACACAACTTGCCGGCGG
CCCTTCAACAGGCGATAGAGACGGTGTCAAATCGTACCAACTGCAAGATG
GAGGATCGTGCCCGCCTCGAGTCTGAAATGGAGAAGGAGAAAGTCGCAGC
ACAGCGACGAGAAGAGGACATGACCCTCTCGGTCCTCGGCGATATCGAAC
CGCGATTCCAAGAGTCGCTTCTCCTGGACGAGAATGAAGGATGCCGCGCG
TTACGACGAGGCATCCAAGAGCTTCGCTTGGGGCAGGACGCATGGACGAC
TGAGCGTTCTTCTTTTCGGGAGAACGCGGTCAAGTTGCTTTTTATTGAGC
AGAATTCCTTGCGATGGTACCGCGAGGTTGAACCTCAGTCGCTTCTCCTG
GACGAGAATGAAGGATGCCGCGCGTTACGACGAGGCATCCAAGAGCTTCG
CTTGGGGCAGGACGCATGGACGACTGAGCGTTCTTCTTTTCGGGAGAACG
CGGTCAAGTTGCTTTTTATTGAGCAGAATTCCTTGCGATGGTACCGCGAG
GTTGAACCTCAGGTCCGCGGATACTTCCGTAAACTCATCGGACGGTTAAA
CGAAGTCGTCCACCAACGCGAAACCGGGGCCGGGAAGAGCGACGCGGCAG
GAGCTATTGTCCAGACGCCTCCAGAGCCCACGAGAGGAGCTCGATCGACT
GGTGACGAGAATCAAGCCGCCAACATCCAAGAAACAGAGGATTTGACAGC
TTGCCTGAAGGACGAGGTCGAAACGTTAGAGCACATCTTGTACATGATCC
CGAGCACGGCTGGCGGGGTGCCTGACGCGTTTCTCGCGTGCACAGATCAT
GCAGCCACGTTGGAAAGCGACGGCGTGGAAGAAGTGTGCCACCAGAGTGC
CGACGCGAGCCGTTCGAGGAGAAGCAGCGATCGTGTGGTCGTCACCGTTG
ACGATGACGTGGGCGACTGAGTCCGCGGATACTTCCGTAAACTCATCGGA
CGGTTAAACGAAGTCGTCCACCAACGCGAAACCGGGGCCGGGAAGAGCGA
CGCGGCAGGAGCTATTGTCCAGACGCCTCCAGAGCCCACGAGAGGAGCTC
GATCGACTGGTGACGAGAATCAAGCCGCCAACATCCAAGAAACAGAGGAT
TTGACAGCTTGCCTGAAGGACGAGGTCGAAACGTTAGAGCACATCTTGTA
CATGATCCCGAGCACGGCTGGCGGGGTGCCTGACGCGTTTCTCGCGTGCA
CAGATCATGCAGCCACGTTGGAAAGCGACGGCGTGGAAGAAGTGTGCCAC
CAGAGTGCCGACGCGAGCCGTTCGAGGAGAAGCAGCGATCGTGTGGTCGT
CACCGTTGACGATGACGTGGGCGACTGA back to top
|