mRNA_S-dermatodea_contig11099.715.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11099.715.1
Unique NamemRNA_S-dermatodea_contig11099.715.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Match: D7G1R3_ECTSI (Putative nuclear LIM interactor-interacting protein, C terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R3_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 4.190e-33
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:   34 VVKDLGILGRPLSKVIMVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASAGDVRDGIIR 240
            +VKDLGI+GRPLSKVIMV+NSLDAIRYHLENGVHISSFYGDR DTELLSTL++LK LA A DVRDGIIR
Sbjct:    1 MVKDLGIIGRPLSKVIMVDNSLDAIRYHLENGVHISSFYGDREDTELLSTLDALKTLAPAADVRDGIIR 69
[Close]
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Match: A0A6H5JQQ2_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.900e-29
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:   28 TAVVKDLGILGRPLSKVIMVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASAGDVRDGIIR 240
            T++VKDLGI+GRPLSKVIMV+NSLDAIRYHLENGVHISSFYGDR DT+LLSTL++LK LA A DVRD IIR
Sbjct:  351 TSMVKDLGIIGRPLSKVIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVRDAIIR 421
[Close]
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Match: A0A1Y2CGJ0_9FUNG (FCP1 homology domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2CGJ0_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 6.340e-13
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:   37 VKDLGILGRPLSKVIMVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASAGDVR-------------DGIIRLYVENQARKEGHTLPPETPVSTAPS 315
            +KDL +LGR LSK I+++NS+ A  Y LENG+ I+S+Y D+ D ELL  LE L+ L  A DVR             +     Y+   +  +     P TP+ T P+
Sbjct:  177 LKDLSVLGRDLSKTIIIDNSIYAFGYQLENGIPITSWYSDKNDKELLCVLEFLQTLIEANDVRPYLKEKYKLIDRANASYNRYLNENSNDDSSVSVPTTPMKTIPT 282
[Close]
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Match: A0A1Y2C401_9FUNG (FCP1 homology domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2C401_9FUNG)

HSP 1 Score: 70.9 bits (172), Expect = 8.250e-12
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   37 VKDLGILGRPLSKVIMVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASAGDVRDGIIRLY 246
            +KDL +LGR LSK I+++NS+ A  Y LENG+ I+S+Y DR D ELL  LE L+ L  A DVR  +   Y
Sbjct:  172 LKDLSVLGRDLSKTIIIDNSIYAFGYQLENGIPITSWYSDRNDRELLCVLEFLQTLIGAYDVRPYLKEKY 241
[Close]
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Match: A0A7R9PU94_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9PU94_9ACAR)

HSP 1 Score: 70.5 bits (171), Expect = 1.950e-11
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   37 VKDLGILGRPLSKVIMVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASAGDVRDGIIRLYVENQARKEGHTLPP 288
            +KDL ILGR LSK I+++NS  A  Y LENG+ I S++ D+ D+ELL  L  L+ L S+    +G +R ++ N+  +  H LPP
Sbjct:  390 IKDLNILGRDLSKTIIIDNSPQAFGYQLENGIPIESWFVDKSDSELLKLLPFLENLVSS----NGDVRPHICNKYHQSCHQLPP 469
[Close]
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Match: A0A7R9LTF4_9ACAR (Hypothetical protein n=2 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9LTF4_9ACAR)

HSP 1 Score: 69.7 bits (169), Expect = 3.640e-11
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   37 VKDLGILGRPLSKVIMVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASA-GDVRDGIIRLYVENQARKEGHTLPP 288
            +KDL ILGR LSK I+++NS  A  Y LENG+ I S++ D+ D+ELL  L  L+ L S+ GDVR  I   Y      +  H LPP
Sbjct:  400 IKDLNILGRDLSKTIIIDNSPQAFGYQLENGIPIESWFVDKSDSELLKLLPFLENLVSSKGDVRPHICNKY-----HQSCHQLPP 479
[Close]
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Match: A0A1Y1XNT3_9FUNG (FCP1 homology domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XNT3_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 4.890e-11
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   37 VKDLGILGRPLSKVIMVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASAGDVRDGIIRLY 246
            +KDL +LGR LSK I+++NS+ A  Y LENG+ I+S+Y D+ D ELL  LE L+ L  A DVR  +   Y
Sbjct:  330 LKDLSVLGRDLSKTIIIDNSIYAFGYQLENGIPITSWYSDKNDKELLCILEFLQTLIGAYDVRPFLKEKY 399
[Close]
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Match: A0A1Y1VFC4_9FUNG (FCP1 homology domain-containing protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VFC4_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-10
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   37 VKDLGILGRPLSKVIMVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASAGDVRDGIIRLY 246
            +KDL +LGR LSK I+++NS+ A  Y LENG+ I+S+Y D+ D ELL  LE L+ +    DVR  +   Y
Sbjct:  170 LKDLSVLGRDLSKTIIIDNSIYAFGYQLENGIPITSWYSDKNDKELLCVLEFLESIVGVYDVRPYLKEKY 239
[Close]
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Match: A0A7R9BH63_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BH63_9CRUS)

HSP 1 Score: 67.4 bits (163), Expect = 2.140e-10
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   37 VKDLGILGRPLSKVIMVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASAGDVRDGI 234
            VKDL ILGR LSK I+V+NS  A  Y+LENG+ I S+Y DR D EL+  L  L+ L +  DVR  I
Sbjct:  312 VKDLSILGRDLSKTIIVDNSPQAFGYNLENGIPIESWYADREDCELMKLLPFLEHLVTLDDVRPRI 377
[Close]
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Match: A0A8J2HDZ1_COTCN (Similar to CTDSPL2: CTD small phosphatase-like protein 2 (Gallus gallus) n=1 Tax=Cotesia congregata TaxID=51543 RepID=A0A8J2HDZ1_COTCN)

HSP 1 Score: 67.0 bits (162), Expect = 2.930e-10
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:   37 VKDLGILGRPLSKVIMVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASAGDVRDGIIRLYVENQARKEGHTLPPE 291
            +KDL ILGR LSK ++++NS  A  Y LENG+ I S++ DR D+EL+  L  L+ L  +G    G +R ++ N+ R     LPP+
Sbjct:  316 IKDLSILGRDLSKTVIIDNSPQAFGYQLENGIPIESWFADRSDSELIKLLPFLENLVISG----GDVRPHIRNEFRLFSF-LPPD 395
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11099.715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1R3_ECTSI4.190e-3386.96Putative nuclear LIM interactor-interacting protei... [more]
A0A6H5JQQ2_9PHAE2.900e-2983.10FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A1Y2CGJ0_9FUNG6.340e-1337.74FCP1 homology domain-containing protein n=1 Tax=Ne... [more]
A0A1Y2C401_9FUNG8.250e-1251.43FCP1 homology domain-containing protein n=1 Tax=Ne... [more]
A0A7R9PU94_9ACAR1.950e-1144.05Hypothetical protein n=1 Tax=Medioppia subpectinat... [more]
A0A7R9LTF4_9ACAR3.640e-1147.06Hypothetical protein n=2 Tax=Oppiella nova TaxID=3... [more]
A0A1Y1XNT3_9FUNG4.890e-1150.00FCP1 homology domain-containing protein n=1 Tax=An... [more]
A0A1Y1VFC4_9FUNG1.040e-1047.14FCP1 homology domain-containing protein n=1 Tax=Pi... [more]
A0A7R9BH63_9CRUS2.140e-1054.55Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
A0A8J2HDZ1_COTCN2.930e-1042.35Similar to CTDSPL2: CTD small phosphatase-like pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11099contigS-dermatodea_contig11099:61..5943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue3.5e-17
Seed eggNOG ortholog2880.D7G1R3
Preferred nameCTDSPL2
KEGG koko:K17616
GOsGO:0003674,GO:0003824,GO:0004721,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030510,GO:0030514,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033157,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051171,GO:0051222,GO:0051223,GO:0051252,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090316,GO:0140096,GO:1901564,GO:1903506,GO:1903827,GO:1903829,GO:1904951,GO:2000112,GO:2001141
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative nuclear LIM interactor-interacting protein, C terminal part
Ec32 orthologEc-17_000290.1
Exons3
Model size427
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11099.715.1prot_S-dermatodea_contig11099.715.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11099 167..928 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.0498102-UTR-S-dermatodea_contig11099:60..1661622924187.0498102-UTR-S-dermatodea_contig11099:60..166Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11099 61..166 -
1694079077.8409798-UTR-S-dermatodea_contig11099:60..1661694079077.8409798-UTR-S-dermatodea_contig11099:60..166Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11099 61..166 -
1622924187.1470313-UTR-S-dermatodea_contig11099:928..9341622924187.1470313-UTR-S-dermatodea_contig11099:928..934Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11099 929..934 -
1694079077.8737247-UTR-S-dermatodea_contig11099:928..9341694079077.8737247-UTR-S-dermatodea_contig11099:928..934Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11099 929..934 -
1622924187.1550496-UTR-S-dermatodea_contig11099:5868..59431622924187.1550496-UTR-S-dermatodea_contig11099:5868..5943Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11099 5869..5943 -
1694079077.8816895-UTR-S-dermatodea_contig11099:5868..59431694079077.8816895-UTR-S-dermatodea_contig11099:5868..5943Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11099 5869..5943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.11479-CDS-S-dermatodea_contig11099:166..2481622924187.11479-CDS-S-dermatodea_contig11099:166..248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11099 167..248 -
1694079077.8566065-CDS-S-dermatodea_contig11099:166..2481694079077.8566065-CDS-S-dermatodea_contig11099:166..248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11099 167..248 -
1622924187.1292243-CDS-S-dermatodea_contig11099:770..9281622924187.1292243-CDS-S-dermatodea_contig11099:770..928Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11099 771..928 -
1694079077.8659592-CDS-S-dermatodea_contig11099:770..9281694079077.8659592-CDS-S-dermatodea_contig11099:770..928Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11099 771..928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11099.715.1

>prot_S-dermatodea_contig11099.715.1 ID=prot_S-dermatodea_contig11099.715.1|Name=mRNA_S-dermatodea_contig11099.715.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
MVENSLDAIRYHLENGVHISSFYGDRGDTELLSTLESLKPLASAGDVRDG
IIRLYVENQARKEGHTLPPETPVSTAPSF*
back to top

mRNA from alignment at S-dermatodea_contig11099:61..5943-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11099.715.1 ID=mRNA_S-dermatodea_contig11099.715.1|Name=mRNA_S-dermatodea_contig11099.715.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5883bp|location=Sequence derived from alignment at S-dermatodea_contig11099:61..5943- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAGGAAGGCCGGGGGCAGGAGGGCGACCGCGGTGGTGAAAGATCTCGG
TATCCTTGGCCGGCCGTTGTCAAAGGTGAGCATTATAGTATGTGTATCAT
ATGATGTATGCATACTACAAGTCACAGTCGGTTTGTATTTGTTTACAAAT
CTTGGCTCCCGAGGGTGTAAAAACGAACGGCGCCACACGGCAGCAAGCGG
CAGAGCAGCACGGCCGGGCACGACCCCACTTATAAAAAAATAAAAAATCT
ATGTACTCGTATGATACTCTGAGTTGTATTATACTGTATAAGCACAAGTA
TTATGTGAAAATCAATTACAGTTCGCATTTGTTACGTTGTTTTGTTATGT
TCTGTGAAGTGCCGCCCGTCGTATGATATTCATCTCACTCTCTGTGTGGT
ATATTGTATATTTATGGTACCTGGTCTCTTTTTTCCTTTTTTGGCCGAAA
GAGGAGCGCCACCTTGGCTTCGTTGTCGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTG
TGTGTGTGTGTTTTCCATTATTTTTATTTTTTATTTCAAAAACGGATCTG
TCTCTGATCTCCTAAAGTTTTTGTATGTATCTGGTGCTGCTGCGGCTCGG
TGTTGATGTTGTGATCACAGCGCTCCTTCCGTGCAAATCATACCGTATGT
CCAAGTCATACCTCCGAGTATACAAGTATAACACTCAGTCGTAGATACCA
GGTACATGGTATGTTGTATGATATGATAAAGATGATGAAGAGGGTATGTA
TCATATACTGTAATATGTGGGATGATATGTGGTACGCACCAAATATGAAC
TTTGTTTCTGGCGTGTCCGCATGCTGTGACGAGAACGCCTGGATGCACAG
AAAAAACGTCGGAGATATTTTTTTTATCCAACCCGTTCATAAATACTTTG
TACAAGTATACTGATTTTTACTCATAATTTTATGTATCTACAGCAGCACA
GCAGCATTTCGTATAATAATATAATAATCCCTGGACTCTTCTATATGTTG
CAGGTATGTGTGTTCGTCGTGATCCTGTCCTATACGCATTATATATACTT
GTACAAAAAAATTGCACTTATGATAATTTGTGCACCACGGACATACCAAT
ACGAGTACGCGTCTGTAGAGCGGGTGAAGTTCACTCTGTTTGTATACAGG
ATCTTGCGGCTTGCGAGAGGTTAACCTTAACAGCTATTAATCATACTATA
CTATAATACTGCACAAGTAGCCATATACACGAACACATTTTGATGAACGG
CATCTCAAGACCTCTGATCATACTGCTGAAGGAAGGCCGGGAGGAAAAAC
CTGGTGGGTTTTGATGGTGGCCGGTCACATACACCACACGTACGTGACGT
ATATATGATACATACAGCAGGATCGTTTTATACATCTGCTCTTACAGCAG
TACCTGTGGTATTTCACAGGATGCTCTGCACGCAGACGCGATTAACCTCC
CCTATTTACACAAGCAAGGCTGTCATCCTTGCTTTTAAATAATAAAAGAT
TAAAAGATTTGTTGGATGACCATGTACTTGTACCATAGCAGTTCCACCTC
ACATCAGCGCACCTCCACTTTATGTACTTCTGCAGTAAGCTCTTGCGTGT
TTATTCCATCTTGCGCGAGCGAGTGTTGGAACAAGATTGAGCTCTTCAGT
CCCGCACGTGCTTCAATACAGCAGAGTACAAAAAAAAAGGGGTGACTCGC
CCGTTTTTTTTTCTCGGGGTATAGAGCTCTACACAGACAGCAGTAGTTTG
CGTCTGCTTCGGAGATAACACACGCCGCGGTGGCATGCACCTGATGCAAC
ATGCCACTCACAACAAGTACCCTTTTTTCGGTTCGATATCCCAAGTCCCA
CCAACTCTTGGGCGCCGCGACGGCCCTTCTGTCTCTGTTCCCCACCTGAA
TCCCCGGGGAACGGCCTGCTGTCAATTCTACAAGAGCCCTTGAGACAGAC
AGACCATGACACGTTTAGAGCCGCACCTGCAGTAACAGACTCATGACGTG
GTTCGTGAAGCGCAACCCCCCCCCTTCAATTTCAACATTCCAGCGCAGAG
CTAGTTGAATTTTAGCACCGCTGCACTTTTGATTTCGGTCTGTTTGGATT
CCACCCGAAACTCTCTGCGTCCAACTAAATATTTTGGTGGCGTTGCTGAA
TCAGATCTCTATTCCGTTCAACGACCGCGGGGCGGGCCCGCGGCTCTGCG
TCTGTCTCGTGCGTGTTCTGAGGTCGGAGGTTGGGGCCGAGCCGGCGTGC
AATATGGTAGGTGGCGCGGGACCACGCACGCCCCTCCCCCTCCCCCGCCC
GTGTCGATTCCACGTTCTTCGTGTTCGGAATGTTTGCGGCCGAACCACAG
GGGGCATTCCATGTTACTGCTGTCGAATGGTCCTTTCAGGTGCCGATTCG
ACAGGTCGACAAGACGACCTTCGAACCCCCCACACACGCCCAAAGACAAG
AACACAAGCCTTTACCCCACACTTGACCCCTCCCCCCCCCCCCCACCCCC
ACCCCCTCGCAAAGACAAGCCTTTGAAGTTTTAACACCTCAGCCCTGATT
TGCCCTTCTGAGGCAATGAAATATGATAAATCCCCTTCCTCACTTGGGAG
TATTAGTCACTCGTATTATACTGAATGTGTAATATTCAATTTGGTTACTC
GGTATGTCCAAATCAACCCCATGGCATATCGTTTGGCGTCGCAAACGCAA
GGTTGATGACCAACCAGCAGCTGGTATCATCCTTGGGGAACGCAGTCTGA
CCACCGAACCGAAAACCTGGCATATCGCTCCGTCCCGGCTTTGTTGGGAC
GCGTGGTCTATAATCCGTGTGGATACAACATGAGTTTAACTAAGAGTAAA
TACACCCCCCACCCCCACCCCCGAGCTACATTAGCCCGAGTTTACCATTT
GTGCAGGGTGCCCCAAGGTCGTCACCAACCGTCCTACGTGTATGGTGCGG
GCGTGCGTGTGGTTGTTGCGATGTTCACTCCTTTTGTTTTTCACTCTTCG
ATGGTTGTTATTAATAATAATTGTGACATTGTGACAACACAACAACTTAC
AAGCTATCATGACATGCCAACGCGGGCGGGCGGTGTGCTTGGAGTAAAAA
CACGGGGCAGCGGTAAACCGGTTCAACATTGATTGACTGATGATTGATTT
GATTTGCACACGTATGGAGGGTACGAGTGGTAAAGGCTACTGGAACGGCC
ATACCATACGTGCAGTAGCCTTTACCACTCGTACCACCCCTGTCACTCAG
AATATATAGGATTTAGAATACAAAATGGATAAGCATATCATATACTGTAT
AGGATTGTAGATCAAATGTGGTTCCAGGAATTTGGGGTGTTAGGGTTAGG
GTGAGTGTTTTAATTTATTTTTATAATTGTTGGAAGCACATCTTATCGCC
TTATTCATTTCAAGTCTGTTTCCTTTATATTACTATTACTAGTGACAAGG
GTGTATAGGCGCCTCGGCCGTTCGGCTTAATCCGACCGGACTTGTGGTCA
GACACGCAAAGAGTCAGAAAAAGAACTACGATAATCATAACTCTACAAGT
GCTTCTATGATACTATACACCGTACCGTCCCTGGTACTCACATGGCACAA
GAGAGAAGAAATAGTACCCCATATACTTGTATAGAGTAACGCAAAACGCT
TTTATAGAAGATAACTCGGACTCAGACTATGCTCCCTCGCCTCTCCGCAG
GTACTTATAAAATAAGATCCAACAATATCGTTCGACCTATGATACGATGT
CACGTGTACAGCTGTAGTATTTACACGAAAGCAGTTACATACGTATATCA
TACCATATCGTACGTAAACACACACAACTTGGCAGCAGTGCCGGCTCAGG
TAGCATCGCGGCGATTTGCTGACTGAGACTCGATGATATCGCGCCGCCCC
CGCCGGTCCCGCGCCCTGTTGAATTTTTCGACCACGAAGAACTAAACGAG
CAACATCGAAGGGTCTCGGATCGCGCATCAGTATGATCTGGATATCGTTT
CGCGACGCATCTGCTTGATTGCTGTCACCGTTGGGGAGGAGGATGGGGGC
GAGAGAGTCCCGAGAGAGTCCCATTGGTCCGCGTCAGCGGATTGTTTTAA
GGGGGCCGATTGCGCTATTTATGCCATGTGCCTGCCGCCGTTGCATCACG
AATCTTGTTACGTGTGTTTTACCCCGTGTGGGACTTGCTTAAGCCTGCTT
TTGGCAATATGTGCTCTCACCGTATTTGATATCAAACGGTGGCTACTACA
GTATATACTATAATACTCTGTATACTCTTTACTGTTTGTACATTGTATAT
ACTTGTACCATATACTCCTTGCGGTAGCCGCCGTGAAAGAGCGATGGTAA
TCCTCCCTTCCTCGCTTTGCTGGCATACCCGGTGGTGTGTGTGTGGTCCC
CTTGTACATGCACCCTATCACCGCAGTAACATACGTGCCCGTAGCGACAA
TAATCCGCGCAAAAACGGTATCGGTCCCAGAAGGGTTAAAATGAGGCAAT
GCCTGGCGTCCGCTGCCGCACAACTTCTATTATCTGTGGTGGCCCATGAA
GCAAAACGGGAACATGATGGATGTAGTGCGCCCTCTACCCCTCCCCTCTC
CCCCCCACACATATGCTTCGAAGGCGGTGTTGGTGTTACATACAAATCCT
CATATTTCTTAATTTATACCGATTTTAGAGTGATATTTTGCCCCAACACA
GTCGTGTACTTGTATACGATTTTCGATGCCAAACAACTTGATGTTTGTGT
TGAGCCAAACAAACTCGATGTGTGTGTGTTGAGCGTCCTACCAACGCACA
CCCACCTCACGGGCGCAGCCGTGGTGGCTACCTGCTACAGTAATACTTAA
GTATAGTTTCGCCGAATACTGTACACATGATACGTCCGTGGGACTGACAA
CGACGCCGCGATCTCCGCTCTTTGTCTCTAATAACCGTTGGATGAAAAAT
CGTCGCCAGGTGATCATGGTCGAGAATTCCTTGGACGCTATCCGTTACCA
CCTTGAGAACGGCGTGCACATCTCGAGCTTCTACGGAGATCGCGGGGACA
CGGAGCTGTTGTCCACCCTAGAGTCCCTCAAACCCCTGGCTTCGGCCGGA
GACGTCCGGGATGGGATCATAAGGTGCGCCTGATCTGTGTTTCGTTTATG
TGTACAAGTATATATTCTTCTGTGTTTTACCCGATTGCTTGGCAGGCCTT
GCCAGAACGTCAAGCTGGCGTGAGGGAGATGAGGGGGGGTTGGGATTGGC
CATACCTGAATGGGTGTTTTTTTTTAGAGCTGACTTGGTGTTTGCCTGAT
CAGGTCCTGTTGCGAGAGCTTTTCGGGCGACCTCGAAGGTGCAGTAGGCG
GGGCGAGTAGTACGATATGACTGTTGGGTTTTTCTGTCGCGAGTCGAGCA
TGTCAGAGCGGCATTTTTCGAGGTAACACACGGCAGGAGGGAACCACGTC
GAGGGTTTCCACCTTGTTAAGGCACGGCGGTATGTACCATACACTCTCAC
GTACCCTATCGAGACACTCTCTCTGTTGTCTGCATTCTCCTCCCTTTGGA
GGGACCGTCCGGTCGCGTGATCAAATTCCTCTTGTGCTCACCCAGCTAAC
GGTCTGTAACGTCGCTTCCCGCTTTCCCGCTGAACGTGTGTTCAGGCTTT
ACGTGGAGAACCAGGCCCGCAAGGAAGGCCACACCCTGCCCCCGGAAACC
CCCGTGTCGACAGCGCCGTCGTTCTGAAAGGGGTTAGAGAGGGTGGGCAT
CCTCCCTTTGTATGGATGAGTGTATTTTGGCTTTTGTTTAAGAGATGGAC
GTGGGGAGGTGGTTGTGCGCTATGCTTGCTTGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11099:61..5943-

>mRNA_S-dermatodea_contig11099.715.1 ID=mRNA_S-dermatodea_contig11099.715.1|Name=mRNA_S-dermatodea_contig11099.715.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig11099:61..5943- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCGAGAATTCCTTGGACGCTATCCGTTACCACCTTGAGAACGGCGT
GCACATCTCGAGCTTCTACGGAGATCGCGGGGACACGGAGCTGTTGTCCA
CCCTAGAGTCCCTCAAACCCCTGGCTTCGGCCGGAGACGTCCGGGATGGG
ATCATAAGATGGTCGAGAATTCCTTGGACGCTATCCGTTACCACCTTGAG
AACGGCGTGCACATCTCGAGCTTCTACGGAGATCGCGGGGACACGGAGCT
GTTGTCCACCCTAGAGTCCCTCAAACCCCTGGCTTCGGCCGGAGACGTCC
GGGATGGGATCATAAGGCTTTACGTGGAGAACCAGGCCCGCAAGGAAGGC
CACACCCTGCCCCCGGAAACCCCCGTGTCGACAGCGCCGTCGTTCTGAGC
TTTACGTGGAGAACCAGGCCCGCAAGGAAGGCCACACCCTGCCCCCGGAA
ACCCCCGTGTCGACAGCGCCGTCGTTCTGA
back to top