mRNA_S-dermatodea_contig11099.716.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11099.716.1
Unique NamemRNA_S-dermatodea_contig11099.716.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11099.716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11099contigS-dermatodea_contig11099:6404..6820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size419
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.002285-CDS-S-dermatodea_contig11099:6403..68141622924187.002285-CDS-S-dermatodea_contig11099:6403..6814Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11099 6404..6814 +
1694079077.8138268-CDS-S-dermatodea_contig11099:6403..68141694079077.8138268-CDS-S-dermatodea_contig11099:6403..6814Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11099 6404..6814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924187.0150173-UTR-S-dermatodea_contig11099:6814..68201622924187.0150173-UTR-S-dermatodea_contig11099:6814..6820Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11099 6815..6820 +
1694079077.8241124-UTR-S-dermatodea_contig11099:6814..68201694079077.8241124-UTR-S-dermatodea_contig11099:6814..6820Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11099 6815..6820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11099.716.1prot_S-dermatodea_contig11099.716.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11099 6404..6814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11099.716.1

>prot_S-dermatodea_contig11099.716.1 ID=prot_S-dermatodea_contig11099.716.1|Name=mRNA_S-dermatodea_contig11099.716.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=137bp
RFDAGSPCLPEEAPPCCDAGLEKAPPPPWIVRAPLTLLLLLLLPPSRVQL
LLGPVPVSDPVDAGSGVALLSVEDAGGEVVEAEEARPLGTRLWRNERRKS
VWRRGWALLLLLLLLLLLPEDLELQRWCLRSGSGRS*
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mRNA from alignment at S-dermatodea_contig11099:6404..6820+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11099.716.1 ID=mRNA_S-dermatodea_contig11099.716.1|Name=mRNA_S-dermatodea_contig11099.716.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at S-dermatodea_contig11099:6404..6820+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCTTCGACGCGGGCAGCCCGTGTCTCCCAGAAGAAGCGCCGCCCTGCTG
CGACGCCGGCTTGGAGAAGGCACCACCTCCTCCTTGGATCGTGCGAGCGC
CGTTAACATTGCTGCTGCTGCTGCTGCTACCGCCGAGCCGTGTCCAGCTG
CTGCTCGGTCCCGTGCCGGTCTCCGACCCCGTTGACGCTGGCTCAGGGGT
GGCGCTGTTGTCCGTAGAGGACGCCGGGGGTGAGGTTGTTGAGGCTGAAG
AAGCTCGCCCGTTAGGGACGAGGCTCTGGAGGAACGAGCGGAGGAAGTCA
GTGTGGAGGCGGGGGTGGGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
CTTACCGGAGGACCTTGAGCTGCAGCGGTGGTGCTTGCGCTCGGGCTCGG
GTCGCTCGTGATGGCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11099:6404..6820+

>mRNA_S-dermatodea_contig11099.716.1 ID=mRNA_S-dermatodea_contig11099.716.1|Name=mRNA_S-dermatodea_contig11099.716.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at S-dermatodea_contig11099:6404..6820+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCTTCGACGCGGGCAGCCCGTGTCTCCCAGAAGAAGCGCCGCCCTGCTG
CGACGCCGGCTTGGAGAAGGCACCACCTCCTCCTTGGATCGTGCGAGCGC
CGTTAACATTGCTGCTGCTGCTGCTGCTACCGCCGAGCCGTGTCCAGCTG
CTGCTCGGTCCCGTGCCGGTCTCCGACCCCGTTGACGCTGGCTCAGGGGT
GGCGCTGTTGTCCGTAGAGGACGCCGGGGGTGAGGTTGTTGAGGCTGAAG
AAGCTCGCCCGTTAGGGACGAGGCTCTGGAGGAACGAGCGGAGGAAGTCA
GTGTGGAGGCGGGGGTGGGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
CTTACCGGAGGACCTTGAGCTGCAGCGGTGGTGCTTGCGCTCGGGCTCGG
GTCGCTCGTGACGCTTCGACGCGGGCAGCCCGTGTCTCCCAGAAGAAGCG
CCGCCCTGCTGCGACGCCGGCTTGGAGAAGGCACCACCTCCTCCTTGGAT
CGTGCGAGCGCCGTTAACATTGCTGCTGCTGCTGCTGCTACCGCCGAGCC
GTGTCCAGCTGCTGCTCGGTCCCGTGCCGGTCTCCGACCCCGTTGACGCT
GGCTCAGGGGTGGCGCTGTTGTCCGTAGAGGACGCCGGGGGTGAGGTTGT
TGAGGCTGAAGAAGCTCGCCCGTTAGGGACGAGGCTCTGGAGGAACGAGC
GGAGGAAGTCAGTGTGGAGGCGGGGGTGGGCGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTCTTACCGGAGGACCTTGAGCTGCAGCGGTGGTGCTTGCG
CTCGGGCTCGGGTCGCTCGTGA
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