mRNA_S-dermatodea_contig11087.711.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11087.711.1
Unique NamemRNA_S-dermatodea_contig11087.711.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11087.711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11087contigS-dermatodea_contig11087:6035..7261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size512
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11087.711.1prot_S-dermatodea_contig11087.711.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11087 6108..7215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.6473994-UTR-S-dermatodea_contig11087:6034..61071622924186.6473994-UTR-S-dermatodea_contig11087:6034..6107Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11087 6035..6107 +
1694079077.6039555-UTR-S-dermatodea_contig11087:6034..61071694079077.6039555-UTR-S-dermatodea_contig11087:6034..6107Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11087 6035..6107 +
1622924186.7094438-UTR-S-dermatodea_contig11087:7215..72611622924186.7094438-UTR-S-dermatodea_contig11087:7215..7261Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11087 7216..7261 +
1694079077.6325705-UTR-S-dermatodea_contig11087:7215..72611694079077.6325705-UTR-S-dermatodea_contig11087:7215..7261Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11087 7216..7261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.6580355-CDS-S-dermatodea_contig11087:6107..62331622924186.6580355-CDS-S-dermatodea_contig11087:6107..6233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11087 6108..6233 +
1694079077.613236-CDS-S-dermatodea_contig11087:6107..62331694079077.613236-CDS-S-dermatodea_contig11087:6107..6233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11087 6108..6233 +
1622924186.6716475-CDS-S-dermatodea_contig11087:6948..72151622924186.6716475-CDS-S-dermatodea_contig11087:6948..7215Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11087 6949..7215 +
1694079077.623149-CDS-S-dermatodea_contig11087:6948..72151694079077.623149-CDS-S-dermatodea_contig11087:6948..7215Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11087 6949..7215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11087.711.1

>prot_S-dermatodea_contig11087.711.1 ID=prot_S-dermatodea_contig11087.711.1|Name=mRNA_S-dermatodea_contig11087.711.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=131bp
MVGATVVVGAKRAFTIYLRLSGFTVMQYLAEYLLRDVFDDTRVAILVILL
FMVSSTWAVNHLLHREIQAWYQEDERERAMARAVDREAIVAAMNCDRELI
TALVKRNGSRHRPTQVFLAKRRLEMAGRNA*
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mRNA from alignment at S-dermatodea_contig11087:6035..7261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11087.711.1 ID=mRNA_S-dermatodea_contig11087.711.1|Name=mRNA_S-dermatodea_contig11087.711.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1227bp|location=Sequence derived from alignment at S-dermatodea_contig11087:6035..7261+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACGCTCGATCCCAAAAATCGCGAACTTGAAGGCCGTTTACGTGGAAGA
CGTGGTTGAACGAGGGGTCCGCGATGGTCGGTGCCACTGTCGTCGTTGGA
GCAAAGCGAGCGTTTACCATCTATCTCCGCCTCTCGGGGTTCACGGTGAT
GCAGTACCTCGCAGAGTATCTCTTGCGCGACGTGTTCGACGACACGCGGG
TGAGCATATAGATAGACACATTTAATCTATGTCCGATTCCGAGTCTTCCT
CTGGCGTTTTTTTTTTATTCTGGGGTACTACAGTAGTATGTCCTATTTCT
TCCTTCTTGTACGATACCATGGCTTCGGGAAAATACCCTTTACACATAAT
AGGGTATTATTCCAAAGTACCATGGTAAGCTCCAGGGGCGGTATATGTGG
TGTATTGTACAAGTATAGTTATGATTAGTTTGATATTTTCTCCTTGGCTC
TTTGCGCATCTGCGCAGATCGGGTCAGAAAAAGCCGATAGGCTAACGTGT
CCAAATCAATCAATCAATCAATCAACGTCTTGATTATCACATTCACAACC
GACCGACAGGCCCGCCAATGGTTGCCGATCCCGCTCGTTCGTGTTCGTAC
TTCGGACCTTGGGTCTGCTAAATCTGTCCCTTTTCTTGAACACAAAAAAA
GCCCCGCCACGGTAAATTAATACTGTTCGCCTTTTAATATTGTAGGTGGG
GCAATACAACAACCCAGGGCCTGTGTCCACCTGTGTGGGTAAAAGTAGCA
CCTACCTGGTAGTTGTTATGGTTTTCTCTAACACCGTATCTGTTGTCGTC
GATGCGAGAAGATGAGAAGCGCCCCACGGCACCTATCCTTCGGCGTGTAT
AAAAATCGTCGTCGCTCCGGCGTTCGATTGTTTCCATCATGGTTTGTATA
TTTATCTACTACAGGTGGCGATCCTCGTGATCCTATTGTTCATGGTTTCA
TCCACCTGGGCGGTCAACCACCTTCTCCACCGGGAGATCCAGGCTTGGTA
CCAGGAGGACGAGCGCGAGAGGGCGATGGCAAGGGCGGTGGATCGTGAGG
CAATCGTCGCAGCGATGAATTGCGACAGGGAGCTCATCACCGCTCTGGTG
AAGCGGAACGGAAGCAGGCACCGACCGACCCAGGTCTTCTTGGCCAAGAG
GCGACTCGAGATGGCGGGACGAAACGCCTAGGCAGCGACGGAGTTCTAGG
ATGCCTCGGGGGGCGTGTTGTTTGCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11087:6035..7261+

>mRNA_S-dermatodea_contig11087.711.1 ID=mRNA_S-dermatodea_contig11087.711.1|Name=mRNA_S-dermatodea_contig11087.711.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at S-dermatodea_contig11087:6035..7261+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCGGTGCCACTGTCGTCGTTGGAGCAAAGCGAGCGTTTACCATCTA
TCTCCGCCTCTCGGGGTTCACGGTGATGCAGTACCTCGCAGAGTATCTCT
TGCGCGACGTGTTCGACGACACGCGGATGGTCGGTGCCACTGTCGTCGTT
GGAGCAAAGCGAGCGTTTACCATCTATCTCCGCCTCTCGGGGTTCACGGT
GATGCAGTACCTCGCAGAGTATCTCTTGCGCGACGTGTTCGACGACACGC
GGGTGGCGATCCTCGTGATCCTATTGTTCATGGTTTCATCCACCTGGGCG
GTCAACCACCTTCTCCACCGGGAGATCCAGGCTTGGTACCAGGAGGACGA
GCGCGAGAGGGCGATGGCAAGGGCGGTGGATCGTGAGGCAATCGTCGCAG
CGATGAATTGCGACAGGGAGCTCATCACCGCTCTGGTGAAGCGGAACGGA
AGCAGGCACCGACCGACCCAGGTCTTCTTGGCCAAGAGGCGACTCGAGAT
GGCGGGACGAAACGCCTAGGTGGCGATCCTCGTGATCCTATTGTTCATGG
TTTCATCCACCTGGGCGGTCAACCACCTTCTCCACCGGGAGATCCAGGCT
TGGTACCAGGAGGACGAGCGCGAGAGGGCGATGGCAAGGGCGGTGGATCG
TGAGGCAATCGTCGCAGCGATGAATTGCGACAGGGAGCTCATCACCGCTC
TGGTGAAGCGGAACGGAAGCAGGCACCGACCGACCCAGGTCTTCTTGGCC
AAGAGGCGACTCGAGATGGCGGGACGAAACGCCTAG
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