mRNA_S-dermatodea_contig11083.708.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11083.708.1
Unique NamemRNA_S-dermatodea_contig11083.708.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Match: A0A6H5KEM7_9PHAE (Tafazzin family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM7_9PHAE)

HSP 1 Score: 436 bits (1122), Expect = 1.270e-150
Identity = 202/253 (79.84%), Postives = 228/253 (90.12%), Query Frame = 1
Query:    1 VECDNRRALLDAVFDRGDTGLLTVSNHMCVYDDPGLWSALVPFWRTGQKKMRWAMCTDDIYNANPVLRRILDAGKTLPIKRSRGMEQPQFKAFFQKLEQGEWGHIFAEGGIRQPWRFSGGEPILGDFKAGIGRLLLRSENPPMVLPMYHIGMHQVAPETPVHKRGRGRLAKPLPNVGRNIRVYVGEPIDVRPIIDKCREKIGDVRHLPWTKRSSKEEIECHKEIAAYVRQHVLKLEAVARREYYANESGLSPY 759
            VEC NR+ LLDAV DRGD GLLTVSNHMCVYDDPGLWSALVPFWRTG+K+MRWA+CTDDIY A+PVL+ I DAG+TLPIKR+RGMEQP FKAFFQKLE GEWGHIFAEG IRQPWRFS GEPILGDFKAGIGRLLLRS++PP+VLPMYHIGMHQ+A E P HKRGRG+L K +PN GR +RVYVGEPIDV PII+KCRE+IGDVR+LPWTKRSS EE+ CH+EIAAY+R+HVLKLEAVAR++YY ++   SPY
Sbjct:  191 VECHNRQELLDAVLDRGDRGLLTVSNHMCVYDDPGLWSALVPFWRTGRKRMRWALCTDDIYYAHPVLKNIFDAGRTLPIKRNRGMEQPLFKAFFQKLEGGEWGHIFAEGAIRQPWRFSRGEPILGDFKAGIGRLLLRSKDPPLVLPMYHIGMHQIASEAPTHKRGRGKLLKIMPNFGRTVRVYVGEPIDVAPIIEKCRERIGDVRNLPWTKRSSMEEVACHREIAAYIREHVLKLEAVARKDYYGDDPDASPY 443          
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Match: D8LB90_ECTSI (Tafazzin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB90_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 1.990e-79
Identity = 138/258 (53.49%), Postives = 159/258 (61.63%), Query Frame = 1
Query:    1 VECDNRRALLDAVFDRGDTGLLTVSNHMCVYDDPGLWSALVPFWRTGQKKMRWAMCTDDIYNANPVLRRILDAGKTLPIKRSRGMEQPQFKAFFQKLEQGEWGHIFAEGGIRQPWRFSGGEPILGDFKAGIGRLLLRSENPPMVLPMYHIGMHQVAPETPVHKRGRGRLAKPLPNVGRNIRVYVGEPIDVRPIIDKCREKIGDVRHLPWTKRSSKEEIECHKEIAAYVRQHVLKLEAVARREYYANESGLSPYTRASE 774
            VEC NR+ALLDAV DRGD GLLTVSNHMCVYDDPGLWSAL+PFWRTG+++MRWA+CTDDIY A+PVL+ I +AG+TLPIKR+RGMEQP FKAFFQKLE GEWGHIFAEG IRQPWRFS  EPIL DFKAGIGRLLLRSE                       +R       PL +                                P + R++ E              HVLKLEAVAR++YY ++   SPY  A +
Sbjct:  182 VECHNRQALLDAVLDRGDRGLLTVSNHMCVYDDPGLWSALIPFWRTGRRRMRWALCTDDIYYAHPVLKNIFEAGRTLPIKRTRGMEQPLFKAFFQKLEGGEWGHIFAEGAIRQPWRFSRDEPILADFKAGIGRLLLRSEG----------------------ERFEFTSENPLTS--------------------------------PQSSRNAGE--------------HVLKLEAVARKDYYGDDPDASPYCTAQK 371          
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Match: A0A835Z8H0_9STRA (Tafazzin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H0_9STRA)

HSP 1 Score: 192 bits (489), Expect = 6.490e-56
Identity = 103/236 (43.64%), Postives = 139/236 (58.90%), Query Frame = 1
Query:   55 TGLLTVSNHMCVYDDPGLWSALVPFWRTGQKKMRWAMCTDDIYNANPVLRRILDAGKTLPIKRSRGMEQPQFKAFFQKLEQGEWGHIFAEGGIRQPWRFSGGEPILGDFKAGIGRLLLRSENPPMVLPMYHIGMHQVAPETPVHKRGRGRLAKPLPNVGRNIRVYVGEPIDVRPIIDKCR------EKIGDVRHLPWTKRSSKEEIECHKEIAAYVRQHVLKLEAVARREYYANES 744
            T LLTVSNHM V DDPGLW A++PFWR G +KMRW++CTDD+Y A   L         +P  R                                      G+PILGDFKAG+GRL+ R  + P+++PMYHIGMH +APE PV +R   +L +   +VGR +R+YVGEP++V  I++K +      E IGDV   PW++R +  E+ CH+EI A +R  VL+LE VARR+YY ++S
Sbjct:  189 TPLLTVSNHMSVLDDPGLWGAILPFWRLGPRKMRWSLCTDDVYFAVKPL---------VPFYRQ-------------------------------------GQPILGDFKAGVGRLVARCSSTPVIVPMYHIGMHTIAPEQPVPRRAAAKLQRAF-SVGRQVRMYVGEPVEVEHILNKWKQGWDGQEGIGDVSKFPWSERGTLAELACHEEITAAIRDAVLELEKVARRDYYGDDS 377          
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Match: A0A7S2UUF3_9STRA (Tafazzin family protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUF3_9STRA)

HSP 1 Score: 187 bits (474), Expect = 3.270e-53
Identity = 93/244 (38.11%), Postives = 146/244 (59.84%), Query Frame = 1
Query:    1 VECDNRRALLDAVFDRGD-TGLLTVSNHMCVYDDPGLWSALVPFWRTGQKKMRWAMCTDDIYNANPVLRRILDAGKTLPIKRSRGMEQPQFKAFFQKLEQGEWGHIFAEGGIRQPWRFSGGEPILGDFKAGIGRLLLRSENPPMVLPMYHIGMHQVAPETPVHKRGRGRLAKPL---PNVGRNIRVYVGEPIDVRPIIDKCREKIGDVRHLPWTKRSSKEEIECHKEIAAYVRQHVLKLEAVAR 720
            V    +  L+D V++R    G+L+VSNHM +YDDPGLWSA++P+WR   + +R+++C DD+Y  +  L  I  AGK LP+ R  G  Q   K + + +++G W HIFAEG I QPWR+  GEP+LG  + G  +LL    + P ++PMYH GMH + PE P  ++ + R++ P+   P  G  + V++G+P  V  I++K  +++G    + W   S     +   +I A + + +L+LEA AR
Sbjct:  179 VVTHRKELLMDCVYNREPGVGILSVSNHMSMYDDPGLWSAIIPWWRMPHRLLRYSLCNDDMYFVSKYLTPIFLAGKALPVSRKAGPNQQFMKDYTEVVDEGNWCHIFAEGKINQPWRYEEGEPVLGKLRIGASKLLTHLSHSPWIIPMYHFGMHDILPEKP--QKNKLRVSTPISMWPRGGNRVDVFIGKPFTVTDILEKMWQEVGGPGSVAWDNDSVLRSYQ--DQITARITEKILELEAEAR 418          
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Match: A0A7S4DV10_9EUKA (Tafazzin family protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DV10_9EUKA)

HSP 1 Score: 148 bits (373), Expect = 8.480e-39
Identity = 94/250 (37.60%), Postives = 142/250 (56.80%), Query Frame = 1
Query:    1 VECDNRRALLDAVFDRGD-TGLLTVSNHMCVYDDPGLWSALVPFWRTGQKKMR----WAMCTDDIYNANPVLRRILDAGKTLPIKRS--RGMEQPQFKAFFQKLEQGEWGHIFAEGGIRQPWRFSGGEPILGDFKAGIGRLLLRSENPPMVLPMYHIGMHQVAPETPVHKRGRGRL-AKPL---PNVGRNIRVYVGEPIDVRPIIDKCREKIGDVRHLPWTKRSSKEEIECHKEIAAYVRQHVLKLEAVA 717
            V+  +   L+DAV +R + TGL TVSNH  + D P + +A+ P+  + ++ ++    W +CTD  + ANPV R  L AGK +PIKR+  +G+ Q   K F  KL+ GEW H++ EG I QPWRF+ G+  LG F  G+G+L+    N PM++P+YH GM  + PE    + G  R+ AKP+   P  G+++ +YVGEPID+  ++              W +  SK+++     IA  VR  +  LE  A
Sbjct:  127 VKVHHAERLIDAVHNRANNTGLFTVSNHASMLD-PAIIAAVYPWEESKEETLKQWPPWTLCTDSFF-ANPVARFWLSAGKAMPIKRASPKGLRQKFLKDFKDKLDDGEWCHMYPEGKITQPWRFAKGKSRLGKFLPGVGKLITTCRNRPMLVPIYHKGMDTILPE----EEGDPRMPAKPISLFPKFGKHVDIYVGEPIDLSDLVQPTNASPEGSEWTEW-ESESKDDLRQWLAIAKRVRAAMKDLEEEA 369          
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Match: A0A7S0VP88_9CRYP (Tafazzin family protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VP88_9CRYP)

HSP 1 Score: 144 bits (362), Expect = 7.680e-37
Identity = 82/206 (39.81%), Postives = 124/206 (60.19%), Query Frame = 1
Query:    1 VECDNRRALLDAVFDR-GDTGLLTVSNHMCVYDDPGLWSALVPFWRTGQKKMRWAMCTDDIYNA-NPVLRRIL-DAGKTLPIKRSRGMEQPQFKAFFQKLEQGEWGHIFAEGGIRQPWRFSGGEPILGDFKAGIGRLLLR---SENPPMVLPMYHIGMHQVAPETPVHKRGRGRLAKPLPNVGRNIRVYVGEPIDVRPIIDKCREK 600
            VE  + + L + +  R   T L+TVSNH    D+P L+SA++P W   Q ++RW++C D++Y    PV  ++   A + LPI RS+ + QP FK F  + ++G W HIF EG + QPW+      +LG  K G+G+L+     S++PP+VLP YH GMH++ P+ P   +   + A P P  G  IRV VGEPI+V+ +I+  RE+
Sbjct:  154 VEISDHKRLTELISKRPSGTPLITVSNHQSSLDEPLLFSAVIP-WPIRQWELRWSLCNDNMYYVFGPVFAKLFFHAARGLPIWRSQSINQPSFKEFCDRAQEGGWCHIFPEGRLWQPWKLQKEGRLLGKLKPGVGKLVGHCDTSKHPPIVLPFYHTGMHRILPQYPSSPK---KQALP-PKTGNTIRVRVGEPIEVQDLIEAHRER 354          
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Match: W4G9P0_9STRA (Tafazzin family protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G9P0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.150e-32
Identity = 73/192 (38.02%), Postives = 107/192 (55.73%), Query Frame = 1
Query:    7 CDNRRALLDAVFDRGD-TGLLTVSNHMCVYDDPGLWSALVPFWRTGQKKMRWAMCTDDI-YNANPVLRRILDAGKTLPIKRSRGMEQPQFKAFFQKLEQGEWGHIFAEGGIRQPWRFSGGE----PILGDFKAGIGRLLLRSENPPMVLPMYHIGMHQVAPETPVHKRGRGRLAKPLPNVGRNIRVYVGEPI 564
            C N   L   V  R D   L+TV+NH    DDP + +A++P+        RW++C+ +  Y   P+L  I    KTLPIKR  G++ P  +  FQ+++ G+W HIF EG I Q     G +      +G  K G+G+L+ R+E  P+VLP+YH+GM +V P+TP HK     L   +P +G+ + V VG PI
Sbjct:   83 CRNEETLEKWVLSRPDHRALITVTNHSATVDDPAVLAAMLPWSCARPSLSRWSICSQEYCYAKGPLLSTIFFGSKTLPIKRGAGIDHPFLQDLFQRVQDGDWVHIFPEGKIVQGGGLGGRDGPDAATIGRLKWGVGKLIARAEITPVVLPIYHVGMDKVMPQTPDHK-----LKSIVPRLGQRVHVLVGSPI 269          
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Match: W4G9Y7_9STRA (Tafazzin family protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G9Y7_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.850e-32
Identity = 73/192 (38.02%), Postives = 107/192 (55.73%), Query Frame = 1
Query:    7 CDNRRALLDAVFDRGD-TGLLTVSNHMCVYDDPGLWSALVPFWRTGQKKMRWAMCTDDI-YNANPVLRRILDAGKTLPIKRSRGMEQPQFKAFFQKLEQGEWGHIFAEGGIRQPWRFSGGE----PILGDFKAGIGRLLLRSENPPMVLPMYHIGMHQVAPETPVHKRGRGRLAKPLPNVGRNIRVYVGEPI 564
            C N   L   V  R D   L+TV+NH    DDP + +A++P+        RW++C+ +  Y   P+L  I    KTLPIKR  G++ P  +  FQ+++ G+W HIF EG I Q     G +      +G  K G+G+L+ R+E  P+VLP+YH+GM +V P+TP HK     L   +P +G+ + V VG PI
Sbjct:   83 CRNEETLEKWVLSRPDHRALITVTNHSATVDDPAVLAAMLPWSCARPSLSRWSICSQEYCYAKGPLLSTIFFGSKTLPIKRGAGIDHPFLQDLFQRVQDGDWVHIFPEGKIVQGGGLGGRDGPDAATIGRLKWGVGKLIARAEITPVVLPIYHVGMDKVMPQTPDHK-----LKSIVPRLGQRVHVLVGSPI 269          
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Match: A0A1V9YC99_9STRA (Tafazzin family protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC99_9STRA)

HSP 1 Score: 129 bits (323), Expect = 7.070e-32
Identity = 75/223 (33.63%), Postives = 118/223 (52.91%), Query Frame = 1
Query:   61 LLTVSNHMCVYDDPGLWSALVPFWRTGQKKMRWAMCTDDI-YNANPVLRRILDAGKTLPIKRSRGMEQPQFKAFFQKLEQGEWGHIFAEGGIRQPWRFSGGEPIL----GDFKAGIGRLLLRSENPPMVLPMYHIGMHQVAPETPVHKRGRGRLAKPLPNVGRNIRVYVGEPIDVRPIIDKCRE-KIGDVRHLPWTKRSSKEEIECHKEIAAYVRQHVLKLEA 711
            L+TV+NH    DDP L++ L+P+     +  RW +C+ +  Y   P+L  +    KTLPIKR  G++ P     F+K+++GEW H+F EG I Q  R    E  L    G  K G+G+L+ R+E  P+V+P+YH+G+  V P+   HK     L   +P +G+ +   VGEPI    +  K  E ++  +     T  S  +E + +  I   + + +L LEA
Sbjct:  102 LITVTNHSSTVDDPALFACLLPWSCANPRLSRWGLCSQEYCYTKGPLLSALFYGSKTLPIKRGAGIDHPMLMDLFKKVQEGEWVHVFPEGKIVQGGRLGQREDKLQKEIGGLKWGVGKLIARAEETPIVIPIYHLGLDSVMPQNANHK-----LKSMIPRIGQRVHARVGEPIYFDDLFVKYAEDRVQGIEGQDHTWVSLDKERQLYSAITRRIEEALLALEA 319          
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Match: A0A067CGR4_SAPPC (Tafazzin family protein n=4 Tax=Saprolegnia TaxID=4769 RepID=A0A067CGR4_SAPPC)

HSP 1 Score: 128 bits (321), Expect = 1.470e-31
Identity = 78/239 (32.64%), Postives = 127/239 (53.14%), Query Frame = 1
Query:   61 LLTVSNHMCVYDDPGLWSALVPFWRTGQKKMRWAMCTDDI-YNANPVLRRILDAGKTLPIKRSRGMEQPQFKAFFQKLEQGEWGHIFAEGGIRQPWRFSG-GEPI---LGDFKAGIGRLLLRSENPPMVLPMYHIGMHQVAPETPVHKRGRGRLAKPLPNVGRNIRVYVGEPIDVRPIIDK-CREKI-GDVRHLPWTKRSSKEEIECHKEIAAYVRQHVLKLEAVARREYYANESGLSP 756
            L+TV+NH    DDP L++ ++P+     +  RW +C+ +  Y   P+L  +    KTLPIKR  G++ P     F+K++ GEW H+F EG I Q        EP+   +G  K G+G+L+ R+E  P+V+P+YH+G+  V P+   HK     L   +P  G ++ V VGEPI    + +K  ++++ G      W  +SS+  +  + +I   +   +L LEA    + Y +   LSP
Sbjct:  105 LITVTNHSSTVDDPALFARMLPWACANPRVSRWGLCSQEYCYTKGPLLSAVFYGSKTLPIKRGAGIDHPMLHDLFKKVQMGEWVHVFPEGKIVQGGHLGQRDEPMQTNIGGLKWGVGKLIARAEETPIVVPIYHLGLDAVMPQNANHK-----LKSMIPTTGNHVHVRVGEPIYFDDLFEKYAKDRVQGAEGPDSWVSKSSEHAL--YSDITRRIEHALLALEA----QCYEDLKSLSP 332          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11083.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEM7_9PHAE1.270e-15079.84Tafazzin family protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB90_ECTSI1.990e-7953.49Tafazzin family protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8H0_9STRA6.490e-5643.64Tafazzin family protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UUF3_9STRA3.270e-5338.11Tafazzin family protein n=1 Tax=Fibrocapsa japonic... [more]
A0A7S4DV10_9EUKA8.480e-3937.60Tafazzin family protein n=3 Tax=Lotharella globosa... [more]
A0A7S0VP88_9CRYP7.680e-3739.81Tafazzin family protein (Fragment) n=1 Tax=Hemisel... [more]
W4G9P0_9STRA4.150e-3238.02Tafazzin family protein n=7 Tax=Aphanomyces astaci... [more]
W4G9Y7_9STRA6.850e-3238.02Tafazzin family protein n=2 Tax=Aphanomyces astaci... [more]
A0A1V9YC99_9STRA7.070e-3233.63Tafazzin family protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CGR4_SAPPC1.470e-3132.64Tafazzin family protein n=4 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11083contigS-dermatodea_contig11083:830..4983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.1
Seed ortholog evalue1.7e-65
Seed eggNOG ortholog2880.D8LB90
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
EggNOG free text desc.cardiolipin acyl-chain remodeling
EggNOG OGsKOG2847@1,KOG2847@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Exons7
Model size778
Cds size777
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.4155571-CDS-S-dermatodea_contig11083:829..10121622924186.4155571-CDS-S-dermatodea_contig11083:829..1012Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 830..1012 -
1694079077.41068-CDS-S-dermatodea_contig11083:829..10121694079077.41068-CDS-S-dermatodea_contig11083:829..1012Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 830..1012 -
1622924186.4266653-CDS-S-dermatodea_contig11083:1453..15181622924186.4266653-CDS-S-dermatodea_contig11083:1453..1518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 1454..1518 -
1694079077.4216366-CDS-S-dermatodea_contig11083:1453..15181694079077.4216366-CDS-S-dermatodea_contig11083:1453..1518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 1454..1518 -
1622924186.435115-CDS-S-dermatodea_contig11083:2387..24991622924186.435115-CDS-S-dermatodea_contig11083:2387..2499Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 2388..2499 -
1694079077.430315-CDS-S-dermatodea_contig11083:2387..24991694079077.430315-CDS-S-dermatodea_contig11083:2387..2499Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 2388..2499 -
1622924186.445919-CDS-S-dermatodea_contig11083:2792..28621622924186.445919-CDS-S-dermatodea_contig11083:2792..2862Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 2793..2862 -
1694079077.4388728-CDS-S-dermatodea_contig11083:2792..28621694079077.4388728-CDS-S-dermatodea_contig11083:2792..2862Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 2793..2862 -
1622924186.4578254-CDS-S-dermatodea_contig11083:3613..36871622924186.4578254-CDS-S-dermatodea_contig11083:3613..3687Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 3614..3687 -
1694079077.452728-CDS-S-dermatodea_contig11083:3613..36871694079077.452728-CDS-S-dermatodea_contig11083:3613..3687Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 3614..3687 -
1622924186.4656017-CDS-S-dermatodea_contig11083:4205..43441622924186.4656017-CDS-S-dermatodea_contig11083:4205..4344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 4206..4344 -
1694079077.463789-CDS-S-dermatodea_contig11083:4205..43441694079077.463789-CDS-S-dermatodea_contig11083:4205..4344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 4206..4344 -
1622924186.4735756-CDS-S-dermatodea_contig11083:4849..49831622924186.4735756-CDS-S-dermatodea_contig11083:4849..4983Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 4850..4983 -
1694079077.4719007-CDS-S-dermatodea_contig11083:4849..49831694079077.4719007-CDS-S-dermatodea_contig11083:4849..4983Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11083 4850..4983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11083.708.1prot_S-dermatodea_contig11083.708.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11083 830..4983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11083.708.1

>prot_S-dermatodea_contig11083.708.1 ID=prot_S-dermatodea_contig11083.708.1|Name=mRNA_S-dermatodea_contig11083.708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=259bp
VECDNRRALLDAVFDRGDTGLLTVSNHMCVYDDPGLWSALVPFWRTGQKK
MRWAMCTDDIYNANPVLRRILDAGKTLPIKRSRGMEQPQFKAFFQKLEQG
EWGHIFAEGGIRQPWRFSGGEPILGDFKAGIGRLLLRSENPPMVLPMYHI
GMHQVAPETPVHKRGRGRLAKPLPNVGRNIRVYVGEPIDVRPIIDKCREK
IGDVRHLPWTKRSSKEEIECHKEIAAYVRQHVLKLEAVARREYYANESGL
SPYTRASE*
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mRNA from alignment at S-dermatodea_contig11083:830..4983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11083.708.1 ID=mRNA_S-dermatodea_contig11083.708.1|Name=mRNA_S-dermatodea_contig11083.708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4154bp|location=Sequence derived from alignment at S-dermatodea_contig11083:830..4983- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGAGTGCGATAACCGACGGGCCTTGCTGGATGCCGTTTTTGACCGGGG AGACACAGGACTCTTGACAGTCAGCAATCACATGTGTGTCTACGACGACC CGGGCCTGTGGTCTGCGCTCGTGCCGTTTTGGAGGTGAGCCACGAACAAT ATCCGGCCGTATGCTTATGCTCTGGGCTCAAAGCGTCGAGGCGTGTATCG AGTCACGTGCGCCCTCCTCTATAACTGGTGTCGGAGGTATCATAAGTAGA ATTGGTCGGGCAGGAGAGCGGCTCTGATTCGTGCCGTGTGCTCTTTCGCA CGTGTCGCAGCCAAATTCGTGGTTGGTTCAAATCGCTTTTTTATTAGCTT TTTAGCGTTTCTGCCACGAGAGCGAATAATGGTACGAGGTGTTTCGCGAT GAGTTGTGACTGGACTGATGGCCGCGCAGAAGGGCACAGGTGACATGTCT TGTTATAGCGCACAGTGCTGAGTACCGCCGTAGTTGCGCAATGCGTGGTA TAACAGTCAAGGTCGAATCAGGCAAAGCACCTGCTGTTGTTTTGTCCCCG AGTCGGACACTCAGGCCCGTTTGCGGCAACCCGTCTGTAACCGAGGACAT CACTCTGCAAGGATGAATTGAACCGGCTAACTAATGCAGGACCGGCCAGA AGAAAATGCGCTGGGCGATGTGCACGGACGACATCTACAACGCTAACCCC GTCCTAAGGCGCATTTTGGACGCAGGCAAGACTCTGCCGATCAAGCGCAG CCGCGGGATGGAGCAGCCCCAATTCAAGGTAGCCATGCCACGGCGGTAGT ACTGGCCATGCTGTCTGTAGGACAGCTGAGCAAATCGGATTTCTAACTCC GGTGGATACTGGGCCGTTGCCGCTAAAGATGCGAATGGGTCGCCTATCGA ACGTTTCGGCGCACTTGTGGGTCGATCGTTGCTCTTGACACACAAGGTCG CAAGCAAGTGTGACCATTGTTATGACAGGACGGAGATGAGCTGCTGCGAA ATAGTAGAGACCACTCAGCGAGCGGCCCGGGGCACGGGGCAGCGCGAATC AAGCTATTTCGCACAGGTCAGGAGGTCTGGATAAACAGCTCGCTGGCCAA CGAGCGTTACCACAAGAACCGTGGCTTGGCGCTCAAAGAGTCCCCCCACT GCTCCAAGCAAGTGGTCACGACGTAGGTAACCATAGACCGGTGGTTCCCA TCTCGACGTTTTACATGAGGATATTTCAGCGATACTCAAGCTTGCCCCCA CTCCCCAACCCCCCCACCCCCTACCCCTGTTTGCGCAATCCTGAAGGCGT TCTTTCAGAAACTGGAACAAGGAGAGTGGGGACACATTTTTGCTGAGGGC GGTATTCGCCAGCCGTGGAGGTGATATGATGCTTTCAAACCCTTTCTAAT AAAGGCGCAAATACGGGTAAAGCGCAAAGTGGATCGGACCGTGTCAGGGC TAGCGGGAGCGGGGGGTGATTTAGTGGTGGGTGTTTCGATGTTGTGGTGT AGCCTACCAGTTTGTGAGTTTGCAGAGTTGTGTTGCCCCGGCGCCTGCAA CCGTACTTGATGTCTGCGAGTTATTCCTTGGGAAGTGGGGACTCTTGGCA AAGAAAGTATCTGTCTTTCCGCTGTGCGTATCATATCTCTCGCACTTGAT TGATCTATCGGTTTTGATTTGATTGATTGTCACCCATGCGGTCGGTAGGC CTCTCCACCCCGATCCTGCTCGTGGTCACGAAACGAGGCACACAGAAGGT ACACACAGAAATCTTACAAAAAATGGGCATCCACACAAGCATAGGGCATG AAGGGGCATATCAGCGGTTGAGAACAGTACATGTTGATTTAGCTGCGTGG CATTTGCGTGTGGTCGATGTCTTGTCCTGGACGGACAGGACAGTGAAGAT GGAAAAGGATCTCTACTAGTTATCTCCTAGAACAGCTTCTCCGCCGATGG GCGTCAACGTCCTCGCATCGTCGATACATTGCTGTGGGGTGCAGTAGGCG TTGTCGGTGCCGCGAGAGTGACGGTTTCCCCCCCAACCGAGCAACGGCGG AAAACCTTGCGTACGTGTTGGGTCGATACTTACCAGTTTTCCGTGGCCGG TTCTTGTGTGCTTCGACCCAGGTTTAGCGGGGGCGAGCCCATCCTTGGGG ATTTTAAAGCGGGTATCGGTCGACTGCTATTGCGGAGCGAGGTGAGCGCC TAGGGGAAGGCGTGCCGTGCGTGGCGACGTACGACCGGCTCTTCCCTGAG CGCATCTGCCAACAGCCGTAATTACGATGTGCCCCTGTTCGACGAGGTTT GCTGCGTTTTCGCATAGAACAGGTGTAATGTGGATGGATTGCATCGTAAT CAGTGCACAGAGTAAGGTAGGCTTCGTGGCTACCCGAGGTTGAAGCCTGC CGCCACGTGGCACGGGCGACCTGTCTTCTCAAGGTGTGAATTCGAAGGCG CTCGACTTGTGCTGTTTGCTGTTGGCGTGTGCAGAACCCGCCGATGGTGC TCCCGATGTACCACATCGGCATGCACCAGGTCGCGCCGGAGACCCCGGTC CACAAGCGCGGCAGGGGAAGGCTGGCCAAGCCGCTCCCAAACGTCGGTGA GGGGGACTTGCGAAACACGGTGTTGCTCCAGCCGCATGGCCCCACGCACG ATTCAACTTGGATCTACAGGAGTTGGTAGGCTTAGTCACGGGCGGCGTTC TACGGTAGGGGTTGAACACATTTGGTTGCGCGGGAGCCGCTTCAAAGTGC GGCCCCAATATCCACCGAACTAAATTGGTATCCGACACCGATAAATGTTC GCCGCCCGAATTATCCATGCTGGAGAATATTGTGTTGCTATTTTAGTGTT TACCGTTTCGTCTTGGGCAAGAGAAAGCTGGCTAGCCGCTTCCAAAAAGC GGCTCAGGTCGTGCAACGAAGCGGCCAAAACCCTACCCAGGGGTCGATCA CTCCACGGTACGGTGCATCCGTCGCTGTATCCCGGCGCGCAGCATGGGTG GTGTACCGGAAGCGAGCACAAGGCAGATAGATGTGGTCCTTGGAAATTCA GAGAAAACGCACCGTCGAACTGTAGTGGTCACCAGATAAACCCCTTCGCG CCATACACGGTGTGTGCCTCACTCGTATACAGTACGTCAGCAGCCGGTCA CTCGCGGTGTGTAGAAAGCGTGTGCAAGTATGATGCTTTGTAGTCCACGC ATGGATGCTCCCTGTTCTCGTATTTTCTCGCACACATCCTTTTACGCTGA GAACGCTCAAAACTGCTCGTCCTTATCTGCTCTCATTAAAGTACGGTATT GTAGCTGCGCTGCCTGCGTCTCTCATCTCACTTTTGCTTGTATTCCCCGG TTGGAGACATTTCCGCACTTGTACCCCTGTGCGGCGTCGACCTGTTGCTG CCTTGCTACTCCCTCCCCCGCGAAACGGCTGTGGCGTCCTGCGCAACGAA AATCTGTTGTGTCAGGACGAAATATTCGAGTTTATGTCGGCGAGCCAATC GACGTCCGTCCCATTATCGACAAGTGCAGGGTGAGTCTCGGGCGTTGTTT CGCCCACGCTGCGCATATCGTGTTGATGAACGTCGTAGTTGCGTTGCAAT ACTCGAGACTTCGAATAGTGGGGGGTGCACTATTAACAGAAACGAGAGCA CCGGAAGCAAGTTTCGTGTACGAGCCATTCAAGTAAGGATCAGTGGGAAG AGGCTTCGTCTAGGCGTGCACTGAGGAACGTCGCTACAGTAGCCATTCAT TGCGGCAACAGGTAGATAACCGACGAGAGCACGCTACGGTCCCCCGTGCC GTACCACGCCTTCGTGTTTCCGCCTGCGATTTATCTCGGTCGTGTCGCAC CCGGAACGCTTGTGCACGGCACAGGAAGGCTATCATAGTCGTTTGTAACC ACGGGACGGTCTATTGATACTTGATTGTGCTCGATCCGTTTGTACCCCGC GCTCCCGTTCTCCCCAACAAGGAAAAGATAGGCGACGTGCGCCATCTGCC TTGGACGAAACGGTCGTCAAAAGAGGAGATAGAGTGTCATAAAGAGATAG CCGCGTACGTTAGACAGCACGTACTCAAGCTCGAGGCGGTTGCCAGGAGG GAATACTACGCCAACGAATCGGGTTTGTCCCCTTACACCAGGGCCTCAGA GTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11083:830..4983-

>mRNA_S-dermatodea_contig11083.708.1 ID=mRNA_S-dermatodea_contig11083.708.1|Name=mRNA_S-dermatodea_contig11083.708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at S-dermatodea_contig11083:830..4983- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGAGTGCGATAACCGACGGGCCTTGCTGGATGCCGTTTTTGACCGGGG
AGACACAGGACTCTTGACAGTCAGCAATCACATGTGTGTCTACGACGACC
CGGGCCTGTGGTCTGCGCTCGTGCCGTTTTGGAGGTGGAGTGCGATAACC
GACGGGCCTTGCTGGATGCCGTTTTTGACCGGGGAGACACAGGACTCTTG
ACAGTCAGCAATCACATGTGTGTCTACGACGACCCGGGCCTGTGGTCTGC
GCTCGTGCCGTTTTGGAGGACCGGCCAGAAGAAAATGCGCTGGGCGATGT
GCACGGACGACATCTACAACGCTAACCCCGTCCTAAGGCGCATTTTGGAC
GCAGGCAAGACTCTGCCGATCAAGCGCAGCCGCGGGATGGAGCAGCCCCA
ATTCAAGGACCGGCCAGAAGAAAATGCGCTGGGCGATGTGCACGGACGAC
ATCTACAACGCTAACCCCGTCCTAAGGCGCATTTTGGACGCAGGCAAGAC
TCTGCCGATCAAGCGCAGCCGCGGGATGGAGCAGCCCCAATTCAAGGCGT
TCTTTCAGAAACTGGAACAAGGAGAGTGGGGACACATTTTTGCTGAGGGC
GGTATTCGCCAGCCGTGGAGGCGTTCTTTCAGAAACTGGAACAAGGAGAG
TGGGGACACATTTTTGCTGAGGGCGGTATTCGCCAGCCGTGGAGGTTTAG
CGGGGGCGAGCCCATCCTTGGGGATTTTAAAGCGGGTATCGGTCGACTGC
TATTGCGGAGCGAGGTTTAGCGGGGGCGAGCCCATCCTTGGGGATTTTAA
AGCGGGTATCGGTCGACTGCTATTGCGGAGCGAGAACCCGCCGATGGTGC
TCCCGATGTACCACATCGGCATGCACCAGGTCGCGCCGGAGACCCCGGTC
CACAAGCGCGGCAGGGGAAGGCTGGCCAAGCCGCTCCCAAACGTCGAACC
CGCCGATGGTGCTCCCGATGTACCACATCGGCATGCACCAGGTCGCGCCG
GAGACCCCGGTCCACAAGCGCGGCAGGGGAAGGCTGGCCAAGCCGCTCCC
AAACGTCGGACGAAATATTCGAGTTTATGTCGGCGAGCCAATCGACGTCC
GTCCCATTATCGACAAGTGCAGGGACGAAATATTCGAGTTTATGTCGGCG
AGCCAATCGACGTCCGTCCCATTATCGACAAGTGCAGGGAAAAGATAGGC
GACGTGCGCCATCTGCCTTGGACGAAACGGTCGTCAAAAGAGGAGATAGA
GTGTCATAAAGAGATAGCCGCGTACGTTAGACAGCACGTACTCAAGCTCG
AGGCGGTTGCCAGGAGGGAATACTACGCCAACGAATCGGGTTTGTCCCCT
TACACCAGGGCCTCAGAGTAGGAAAAGATAGGCGACGTGCGCCATCTGCC
TTGGACGAAACGGTCGTCAAAAGAGGAGATAGAGTGTCATAAAGAGATAG
CCGCGTACGTTAGACAGCACGTACTCAAGCTCGAGGCGGTTGCCAGGAGG
GAATACTACGCCAACGAATCGGGTTTGTCCCCTTACACCAGGGCCTCAGA
GTAG
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