prot_S-dermatodea_contig11077.705.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11077.705.1
Unique Nameprot_S-dermatodea_contig11077.705.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length401
Homology
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BLAST of mRNA_S-dermatodea_contig11077.705.1 vs. uniprot
Match: A0A6H5L472_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L472_9PHAE)

HSP 1 Score: 338 bits (866), Expect = 7.000e-107
Identity = 250/397 (62.97%), Postives = 298/397 (75.06%), Query Frame = 0 
Query:    9 SSRLDSIVTQLQSEIESGATPQVQSRVNLDSLFADLRPPSSALTSLSPTTTSSSPGIPTAAGINSDQPEKPPPASDTSGGLKPSPST--ATPGGGQDLESLSDMLGRIQANAKARDLADSRTRAAALRSGGPLSEG--LSTLTLSKHKELKTRFASIRQGRVSWVVLPMMRRARKAGIPLSTGVYNAAIAAYLGTPSKYEDALRVLELLRNSGDPDVGPDLKSYNIAMRVCGEAGKWRVVFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSISPRQNMIQIVYDMEQAGVEPTKYTYTLLLDCLAQRGKAFDGFQVMARLVDARAPLLPLGYRAGLLLCKEYGDWRRAMVLMEDMRVSKKRVS 401
            SSRL  +V+QLQ E+ +G+TPQV+S + LD LFADLR         + TTT       T  G N+  P+ P        G   +  +  A   G  DLESLSDML R+QA+AKARDLA++  R+ ALRSGGP+ +    S +T+   +++KTRF +IR+GRV W VLP++ +A++AGIPLSTGVYNAAIAAY GTP KYEDALRVL +LR   DP V PDL SYN AM VC EAG+WR+V +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGS +PR++MI++V++MEQAGVEP  YT+T LL CLA+R K FDGFQ  ARLVDARAPLLP G+RAGL  C  YGDWRRAM+LMEDMRV+K+R S
Sbjct:  115 SSRLQDVVSQLQGELRAGSTPQVRSSIKLDGLFADLRGQEDTPRGRNSTTT-------TTTGPNTIPPKSPKQQRRLPNGKLSAAGSGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPVRSWVTIGNQRDIKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLICLARRRKTFDGFQ--ARLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPS 502
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BLAST of mRNA_S-dermatodea_contig11077.705.1 vs. uniprot
Match: D7FLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV0_ECTSI)

HSP 1 Score: 345 bits (885), Expect = 3.630e-106
Identity = 254/405 (62.72%), Postives = 300/405 (74.07%), Query Frame = 0 
Query:    9 SSRLDSIVTQLQSEIESGATPQVQSRVNLDSLFADLR---PPSSALTSLSPTTTSSSPGIPTAAGINSDQPEKPPPASDTSGGLKPSPSTATPGGGQ-------DLESLSDMLGRIQANAKARDLADSRTRAAALRSGGPLSE--GLSTLTLSKHKELKTRFASIRQGRVSWVVLPMMRRARKAGIPLSTGVYNAAIAAYLGTPSKYEDALRVLELLRNSGDPDVGPDLKSYNIAMRVCGEAGKWRVVFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSISPRQNMIQIVYDMEQAGVEPTKYTYTLLLDCLAQRGKAFDGFQVMARLVDARAPLLPLGYRAGLLLCKEYGDWRRAMVLMEDMRVSKKRVS 401
            SSRL  +V+QLQ E+ +G TPQV+S + LDSLFADLR     S    S +PTTT                P+  PP S       PS      G G        DLESLS+ML R+QA+AKARDLA++  R+  LRSGGP+ +    S +T+   +++KTRF +IR+GRV W VLP++ +A++AGIPLSTGVYNAAIAAY GTP KYEDALRVL +LR   DP V PDL SYN AM VC EAG+WR+V +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGS +PR++MI++V++MEQAGVEP  YT+T LL+CLA+R K FDGFQVMARLVDARAPLLP G+RAGL  C  YGDWRRAM+LMEDMRV+K+R S
Sbjct:   65 SSRLQDVVSQLQGELRAGTTPQVRSSIKLDSLFADLRGQEDTSRGRNSKTPTTTG---------------PKTIPPKSPKQPRRLPSGKFCAAGSGDAALQETDDLESLSNMLDRVQASAKARDLAEAEARSLELRSGGPIGDDPARSWVTIGNQRDMKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKIFDGFQVMARLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPS 454
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11077.705.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L472_9PHAE7.000e-10762.97Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FLV0_ECTSI3.630e-10662.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 262..295
e-value: 1.2E-5
score: 23.2
coord: 227..260
e-value: 2.1E-8
score: 31.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 223..272
e-value: 3.9E-10
score: 39.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 281..341
e-value: 6.1E-5
score: 23.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 294..330
score: 6.917
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 224..258
score: 11.685
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 259..293
score: 11.345
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 185..220
score: 7.059
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 331..365
score: 7.224
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 313..401
e-value: 2.9E-8
score: 35.4
coord: 162..312
e-value: 8.0E-31
score: 109.5
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 183..347
coord: 162..304

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11077contigS-dermatodea_contig11077:4680..7415 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11077.705.1mRNA_S-dermatodea_contig11077.705.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11077 4680..7417 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11077.705.1 ID=prot_S-dermatodea_contig11077.705.1|Name=mRNA_S-dermatodea_contig11077.705.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=401bp
EDQASLASSSRLDSIVTQLQSEIESGATPQVQSRVNLDSLFADLRPPSSA
LTSLSPTTTSSSPGIPTAAGINSDQPEKPPPASDTSGGLKPSPSTATPGG
GQDLESLSDMLGRIQANAKARDLADSRTRAAALRSGGPLSEGLSTLTLSK
HKELKTRFASIRQGRVSWVVLPMMRRARKAGIPLSTGVYNAAIAAYLGTP
SKYEDALRVLELLRNSGDPDVGPDLKSYNIAMRVCGEAGKWRVVFKLLKE
MEEDGIKPDTSSYNCALNGLAKCREWYRARRLFRKMGATGLTPDTYSFNG
LVEAAGMGSISPRQNMIQIVYDMEQAGVEPTKYTYTLLLDCLAQRGKAFD
GFQVMARLVDARAPLLPLGYRAGLLLCKEYGDWRRAMVLMEDMRVSKKRV
S
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf