mRNA_S-dermatodea_contig10104.72.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10104.72.1
Unique NamemRNA_S-dermatodea_contig10104.72.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10104.72.1 vs. uniprot
Match: D8LN25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN25_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.440e-9
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   10 KTVAARVPRNETEVRFPGLAMPNTNVVELEDGFGEV 117
            K   ARVPRNE E RFPGLAMPNT+VV+LEDGFGEV
Sbjct:   98 KAAVARVPRNEKEARFPGLAMPNTSVVQLEDGFGEV 133
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BLAST of mRNA_S-dermatodea_contig10104.72.1 vs. uniprot
Match: A0A6H5LEZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.290e-8
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   10 KTVAARVPRNETEVRFPGLAMPNTNVVELEDGFGEV 117
            K   ARVPRNE E RFPGLAMPNT  V+LEDGFGEV
Sbjct:   99 KASVARVPRNEKEARFPGLAMPNTGAVQLEDGFGEV 134
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BLAST of mRNA_S-dermatodea_contig10104.72.1 vs. uniprot
Match: A0A835YV72_9STRA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.060e-6
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    7 AKTVAARVPRNETEVRFPGLAMPNTNVVELEDGFGEVKD 123
            A ++  RVPRNETE +FPGLAMPNT  VEL+  F EV D
Sbjct:   92 AASLQPRVPRNETEAKFPGLAMPNTKPVELDPAFHEVTD 130
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10104.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN25_ECTSI1.440e-980.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LEZ0_9PHAE1.290e-877.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV72_9STRA9.060e-664.10Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10104contigS-dermatodea_contig10104:2233..6290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue5.8e-08
Seed eggNOG ortholog2880.D8LN25
Preferred nameDHX8
KEGG koko:K12818
KEGG Pathwayko03040,map03040
GOsGO:0000003,GO:0000350,GO:0000375,GO:0000377,GO:0000390,GO:0000393,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006139,GO:0006325,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009653,GO:0009790,GO:0009987,GO:0010171,GO:0010172,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018992,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032988,GO:0032991,GO:0034622,GO:0034641,GO:0040007,GO:0040021,GO:0040022,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0046483,GO:0048468,GO:0048477,GO:0048589,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051276,GO:0051704,GO:0055044,GO:0065003,GO:0070013,GO:0070035,GO:0071007,GO:0071013,GO:0071014,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924139.072424-CDS-S-dermatodea_contig10104:2232..23261622924139.072424-CDS-S-dermatodea_contig10104:2232..2326Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10104 2233..2326 -
1694079044.0623813-CDS-S-dermatodea_contig10104:2232..23261694079044.0623813-CDS-S-dermatodea_contig10104:2232..2326Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10104 2233..2326 -
1622924139.092427-CDS-S-dermatodea_contig10104:6105..62901622924139.092427-CDS-S-dermatodea_contig10104:6105..6290Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10104 6106..6290 -
1694079044.0737507-CDS-S-dermatodea_contig10104:6105..62901694079044.0737507-CDS-S-dermatodea_contig10104:6105..6290Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10104 6106..6290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10104.72.1prot_S-dermatodea_contig10104.72.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10104 2233..6290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10104.72.1

>prot_S-dermatodea_contig10104.72.1 ID=prot_S-dermatodea_contig10104.72.1|Name=mRNA_S-dermatodea_contig10104.72.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
GAAKTVAARVPRNETEVRFPGLAMPNTNVVELEDGFGEVKDTAGEDDAEG
DRDQSLRRKRSRSPSREDRGRRSRGKDCSPDRPADRSPNGGDD
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mRNA from alignment at S-dermatodea_contig10104:2233..6290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10104.72.1 ID=mRNA_S-dermatodea_contig10104.72.1|Name=mRNA_S-dermatodea_contig10104.72.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4058bp|location=Sequence derived from alignment at S-dermatodea_contig10104:2233..6290- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGCTGCCAAGACCGTCGCGGCGCGCGTGCCGCGAAACGAGACCGAGGT
TCGTTTTCCGGGCCTTGCCATGCCGAACACTAACGTCGTGGAGCTCGAGG
ATGGGTTTGGGGAGGTAAAGGATACGGCTGGTGAAGATGATGCTGAGGGC
GACAGGGACCAATCCCTGCGGCGCAAGCGTAGCAGGTATGTTTGGTATTA
TGATAGTACATTATTATTATTTTCTATAGTACAGTAGGCAGAATGGGCTT
TACGGCGGGGCGACTGCTATCTCGTAGAGCTTATAAAATAATATGTTGTG
GCTAGTTGGTGGCCACCGCTACGCCCGTTAGGTAGTCGGTTTGCGTTGAT
AGGAGTCGTGGCTGTATACTTGTACAGCAGGAGGGTTTGGTACCAAGTCC
AAAATTTAATTTATACATACATAATATGTGATAGAGCAGTAGAGATCGAG
ATATCCACTCTGTATACAAGTATAATACTTTCAGACAAGCACATTTTATC
CTATAGTACTGGCCCCTCGCGGAACCTGCTCACCGACCGAACGTATCCAT
GATTCCCGACGTACAGTCGATGTGGCTTAGAACTCGGTTTGGGCGGGTTG
TATTTGGGTCAGTGCCTCGGGGTTGCCTCAGGGGTGGTTTGCGGAGCTAA
AACGTCGTTGTTCGAATTTACTTCCACATCGATTGCTCTCTGGTTTTCCT
CCGAACGAGCATTACAATCACTCAACGCGCTCCTCGGTGACCTCAGCCCT
CGCGGGACACCCACAAAGGTGGGCCAAGGTTCAGTACAGCAGTGGGCTTT
CGCGGTCATGACCATACCAAGACACCTCTGCTAAGCGAAGGGGCTGTGCC
GCTCCGATCATCCCCGGGCAAATATAAATAAAGCCTGGGGGGTTCGCTTG
CTTTGAATGGTAATTTTTCGTTTTTCGACGTCATAACCGCGTGATCTGCA
ACACGGGTGTTTTATAAATAGTGGCTTTTGTCTTCCGTCTGAATGCAGCA
AACGTCGTACGCTTGTACATTAGCCTACAGCCTACAGCACATATTTGTAC
ATGTGAGAGATAGTTGTCCAAGAGCTTGCTGTTCATCATCAGGGCCACCA
GTAGGCAGGTACAGCGTCTGTACCGGGAGAGACAAAGCACAGGGCCCGCC
CAGCGACGTGTGTTTTGACGTGCAGCCTTACGTACTACAGCTTGCTCTAC
CCGCAAAAAATGTTCGAGATTGTTTCGACTCTACGACAACCAGTAGTGGC
ATACAAAAATAACGAGCGCCGTTTTGGACTACATGTTTTTTTAGGCCAAG
TCGTTACGGGACCACAAAAAAACAAAAATTAAATAAAAAACGTGCTCATT
TCCGCGCCAAAGTTTTCTTTTTTGTTTGTGTGCCCTGCTATGGGCTTTGC
GGGGAAAACAAAAAACACAACAACACACGCACACACACACACACACACGA
GAATGGGAGGAGACCCGGGAATCTTGGCCTTAAAGATTTACCGACCCGAT
TCTTGAACTTGAATTGAGTATGCAAGGCGTAATTACTACTATACATTTGC
GTGCCTTTTTTAGTCTTCTCGCGTGAATACCTCTCAGCGCGCGGACCGCG
CGCCTTTTTTTCGCTGAATCGTTCAGAGTATTTTTGACTTTCATACCCCA
TGTTCAATGCCTTCTTGACTGCGTAACCCGACCTCCACCGCGGCTGGCGA
GACGAAGTTATTTGCTTTTAACGCATATCTCCTAGGTGCATAGTGCAGGT
CATCCTGTGTGCTCGGTGTAAGTACAAGATCCACAAGGACCCTATACAGC
AGATGTACGCGATGTTGCAGACAAAACAATGTAGTTAGAGGCCAGAGCGG
AGGAGAGGGCGCGAGTAGCGCAGCACCAAGCAGCGGGACCTTGAGGCTCT
GGGGTTGGGAAACGTTGGAGACAGGGGCGAGGGAGGCTGTGTGTTCGTCT
GCGTTTCGTGTTTGGTCCTACTCTCTTCTTTCTTTCGTTATTTTGAGTTC
ATATTTGAGCCACGGCGGCTGACGGTGCCTGGGGGACAGGTGCGAGGGAA
ACTGCGAAAGTGTGCTTTCTTTTGCCCTCTCCTTCTTCCTTTGTTTATGC
ATTTATTTATTTATTTTGCCCTGGGCTACTGTACCATATCAATCTCTCAC
GCTCCATGCAGTTAGTTTGTAACAGCAACAAGCAGCAGGGTAGATTATCC
TACCCATACACTACGAGGACGCGGTCGGTCGCGGTCTTAATGATAGTATA
TGATATGTGATAGCATCCGCAACGAAACCCGACTTCGCTATGTTTTATTC
GTGGAACGTCCTCGGCTACTCGATCGATTGATTGCATGTAATCCCACTTT
CTTGCGTCACCCCGAGGTAACTCTAGGTAGCCTCGGGGTATAGACCTGGG
GCTACGTCCGAAGGGCTTCTTCTACATACACATATGATACAAGTACACAG
AGTAGTAAATACATACACAGCCGAACGACGGTGATACTGGACACGGCAAT
AGCAAGGCGCTCGCTTGAGTTCAGCTCGATCGACCAGCGTGCCCTCGAAA
ACATATATATTTGCTCCTGTGGATTGATCGCTCAGGGGCAGAGCAACAGA
CTGCTCCGCTACCAGCGGCTGCTTTGTGTGTGGTTTGCCTTTTTATTTTA
TTTTCTGGTTGTGCCCATCAACTAACTATTCTCCCCAGCTTGCACCACGA
TCCCACAGCAGTAGTGCTGATCCATGGGCGCTCCGGCGGCCATCGCAGCT
GCAGTCCTTCGCTCCTCCTTGCATACATCCCGTCCTCACAGGCAGGTGTT
GTACTGTGCCGAGGGAGGCGTGTACAGTACTGTTGTCTGTTTTTTTTTTT
ATCTTGCCACCTACGGCACACGCGTGTTTTTGCCCATTTTTCGGATGCTG
GAACCAAACAACAAACTCAAAAACCAGCTGTGGAACCACACTGCACAAAG
TATTCCTTAGCGAAAACGAGAGATTGTGCAAAAGCGCAAGAGCTACCTGC
AAACCAAAATTCTGCGCACTACACCCCTGTTGAGAGTGCTCACCCGAGAG
CTCTCCCAAAGTTTGAGCATCAACGGTGAACAGCAAGCCAGAGGCACATC
GATTGATATCTGTCCAGCTCGAGCTTTCCTAAGGATTTTATTTTGAAACG
ACCAATCCAGACACCCTTGGCCACCGCGAGGCAAATCTCATTTTCTTGTG
GTGAACCAAAAATTGCACAAGCCGAACCCCTCAAGTGGGCCAAGGGTAGA
TAGAGCATTGCCGAAGGTTCCGTCTCAGTCTGTGCTACCCCGAGTGGAGG
CGAAAGCGATTTGTGAGAGCTGAAACACTTGGGAAATGGGTGGGAAGCGA
AAAGATACAGCGAAAAAGCCTTATTACAGATTCTCGTTGTTCTTTTCCAT
CATAGTCTGCAAAAAAAAACATGTGTGACGGAAATGAGCCTCATATGTGT
AGGTCGATCAAAAACTTTCGCCACCCACGTTATTTTTTCTGGCCCAGTTC
CGTTTTTTTGTTCCCCTACCGCGCTTCCCACAAAACATTTCTACGAAAGC
GGTTTCTTTTTTTTTGTTTTTTTTACTCTCTTCTCGTTGAAATCCCGAGT
ACGTTTGTTTTTTGGGTCCCACAAGAACTCCATGGGAGGTTTTCGGTCGT
TTTCCGACATCGCACAGAAACACTCCAGCCACCTGAACCTTCCCCAGTCG
CGATAGATTATCCCATCTCTCTTCGGTGCCAGTCCCATTATTTTGCCCCG
CATTGGGCCCAACCAAGTCTTGTGCCTGGCATGTATACCGCGAAAAACGG
AGTACACACAGCAATCGGCGCGGCATCAAGCCGCCCTCTTCCTTCTCGCT
CTCGTAATAACACAAAACGTGTACTACTGTATGTATGTACGGCAATCGTG
TTCTCGGTTGTATGAAACTGATTTTTGATGCCACGCGCGATGCCGGACGC
GATCCCTGTCGCAGGAGCCCCAGCCGAGAAGACCGTGGGCGGCGGAGTCG
GGGAAAGGACTGTTCCCCGGACCGGCCCGCGGACCGTTCCCCGAACGGTG
GCGACGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10104:2233..6290-

>mRNA_S-dermatodea_contig10104.72.1 ID=mRNA_S-dermatodea_contig10104.72.1|Name=mRNA_S-dermatodea_contig10104.72.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig10104:2233..6290- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGCTGCCAAGACCGTCGCGGCGCGCGTGCCGCGAAACGAGACCGAGGT
TCGTTTTCCGGGCCTTGCCATGCCGAACACTAACGTCGTGGAGCTCGAGG
ATGGGTTTGGGGAGGTAAAGGATACGGCTGGTGAAGATGATGCTGAGGGC
GACAGGGACCAATCCCTGCGGCGCAAGCGTAGCAGGGGGCTGCCAAGACC
GTCGCGGCGCGCGTGCCGCGAAACGAGACCGAGGTTCGTTTTCCGGGCCT
TGCCATGCCGAACACTAACGTCGTGGAGCTCGAGGATGGGTTTGGGGAGG
TAAAGGATACGGCTGGTGAAGATGATGCTGAGGGCGACAGGGACCAATCC
CTGCGGCGCAAGCGTAGCAGGAGCCCCAGCCGAGAAGACCGTGGGCGGCG
GAGTCGGGGAAAGGACTGTTCCCCGGACCGGCCCGCGGACCGTTCCCCGA
ACGGTGGCGACGACGAGCCCCAGCCGAGAAGACCGTGGGCGGCGGAGTCG
GGGAAAGGACTGTTCCCCGGACCGGCCCGCGGACCGTTCCCCGAACGGTG
GCGACGAC
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