prot_S-dermatodea_contig10104.72.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10104.72.1
Unique Nameprot_S-dermatodea_contig10104.72.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length93
Homology
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BLAST of mRNA_S-dermatodea_contig10104.72.1 vs. uniprot
Match: D8LN25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN25_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.440e-9
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0 
Query:    4 KTVAARVPRNETEVRFPGLAMPNTNVVELEDGFGEV 39
            K   ARVPRNE E RFPGLAMPNT+VV+LEDGFGEV
Sbjct:   98 KAAVARVPRNEKEARFPGLAMPNTSVVQLEDGFGEV 133
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BLAST of mRNA_S-dermatodea_contig10104.72.1 vs. uniprot
Match: A0A6H5LEZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.290e-8
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0 
Query:    4 KTVAARVPRNETEVRFPGLAMPNTNVVELEDGFGEV 39
            K   ARVPRNE E RFPGLAMPNT  V+LEDGFGEV
Sbjct:   99 KASVARVPRNEKEARFPGLAMPNTGAVQLEDGFGEV 134
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BLAST of mRNA_S-dermatodea_contig10104.72.1 vs. uniprot
Match: A0A835YV72_9STRA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.060e-6
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0 
Query:    3 AKTVAARVPRNETEVRFPGLAMPNTNVVELEDGFGEVKD 41
            A ++  RVPRNETE +FPGLAMPNT  VEL+  F EV D
Sbjct:   92 AASLQPRVPRNETEAKFPGLAMPNTKPVELDPAFHEVTD 130
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10104.72.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN25_ECTSI1.440e-980.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LEZ0_9PHAE1.290e-877.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV72_9STRA9.060e-664.10Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10104contigS-dermatodea_contig10104:2233..6290 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10104.72.1mRNA_S-dermatodea_contig10104.72.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10104 2233..6290 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10104.72.1 ID=prot_S-dermatodea_contig10104.72.1|Name=mRNA_S-dermatodea_contig10104.72.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
GAAKTVAARVPRNETEVRFPGLAMPNTNVVELEDGFGEVKDTAGEDDAEG
DRDQSLRRKRSRSPSREDRGRRSRGKDCSPDRPADRSPNGGDD
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