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Homology
BLAST of mRNA_S-dermatodea_contig11077.705.1 vs. uniprot
Match: A0A6H5L472_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L472_9PHAE) HSP 1 Score: 338 bits (866), Expect = 7.000e-107 Identity = 250/397 (62.97%), Postives = 298/397 (75.06%), Query Frame = 1
Query: 25 SSRLDSIVTQLQSEIESGATPQVQSRVNLDSLFADLRPPSSALTSLSPTTTSSSPGIPTAAGINSDQPEKPPPASDTSGGLKPSPST--ATPGGGQDLESLSDMLGRIQANAKARDLADSRTRAAALRSGGPLSEG--LSTLTLSKHKELKTRFASIRQGRVSWVVLPMMRRARKAGIPLSTGVYNAAIAAYLGTPSKYEDALRVLELLRNSGDPDVGPDLKSYNIAMRVCGEAGKWRVVFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSISPRQNMIQIVYDMEQAGVEPTKYTYTLLLDCLAQRGKAFDGFQVMARLVDARAPLLPLGYRAGLLLCKEYGDWRRAMVLMEDMRVSKKRVS 1203
SSRL +V+QLQ E+ +G+TPQV+S + LD LFADLR + TTT T G N+ P+ P G + + A G DLESLSDML R+QA+AKARDLA++ R+ ALRSGGP+ + S +T+ +++KTRF +IR+GRV W VLP++ +A++AGIPLSTGVYNAAIAAY GTP KYEDALRVL +LR DP V PDL SYN AM VC EAG+WR+V + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGS +PR++MI++V++MEQAGVEP YT+T LL CLA+R K FDGFQ ARLVDARAPLLP G+RAGL C YGDWRRAM+LMEDMRV+K+R S
Sbjct: 115 SSRLQDVVSQLQGELRAGSTPQVRSSIKLDGLFADLRGQEDTPRGRNSTTT-------TTTGPNTIPPKSPKQQRRLPNGKLSAAGSGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPVRSWVTIGNQRDIKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLICLARRRKTFDGFQ--ARLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPS 502
BLAST of mRNA_S-dermatodea_contig11077.705.1 vs. uniprot
Match: D7FLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV0_ECTSI) HSP 1 Score: 345 bits (885), Expect = 3.630e-106 Identity = 254/405 (62.72%), Postives = 300/405 (74.07%), Query Frame = 1
Query: 25 SSRLDSIVTQLQSEIESGATPQVQSRVNLDSLFADLR---PPSSALTSLSPTTTSSSPGIPTAAGINSDQPEKPPPASDTSGGLKPSPSTATPGGGQ-------DLESLSDMLGRIQANAKARDLADSRTRAAALRSGGPLSE--GLSTLTLSKHKELKTRFASIRQGRVSWVVLPMMRRARKAGIPLSTGVYNAAIAAYLGTPSKYEDALRVLELLRNSGDPDVGPDLKSYNIAMRVCGEAGKWRVVFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSISPRQNMIQIVYDMEQAGVEPTKYTYTLLLDCLAQRGKAFDGFQVMARLVDARAPLLPLGYRAGLLLCKEYGDWRRAMVLMEDMRVSKKRVS 1203
SSRL +V+QLQ E+ +G TPQV+S + LDSLFADLR S S +PTTT P+ PP S PS G G DLESLS+ML R+QA+AKARDLA++ R+ LRSGGP+ + S +T+ +++KTRF +IR+GRV W VLP++ +A++AGIPLSTGVYNAAIAAY GTP KYEDALRVL +LR DP V PDL SYN AM VC EAG+WR+V + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGS +PR++MI++V++MEQAGVEP YT+T LL+CLA+R K FDGFQVMARLVDARAPLLP G+RAGL C YGDWRRAM+LMEDMRV+K+R S
Sbjct: 65 SSRLQDVVSQLQGELRAGTTPQVRSSIKLDSLFADLRGQEDTSRGRNSKTPTTTG---------------PKTIPPKSPKQPRRLPSGKFCAAGSGDAALQETDDLESLSNMLDRVQASAKARDLAEAEARSLELRSGGPIGDDPARSWVTIGNQRDMKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKIFDGFQVMARLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPS 454
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 350.1 |
| Seed ortholog evalue | 1.3e-93 |
| Seed eggNOG ortholog | 2880.D7FLV0 |
| KEGG ko | ko:K17710 |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03016,ko03029 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Pentatricopeptide repeat |
| Ec32 ortholog | Ec-26_001150.1 |
| Exons | 4 |
| Model size | 1207 |
| Cds size | 1203 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11077.705.1 >prot_S-dermatodea_contig11077.705.1 ID=prot_S-dermatodea_contig11077.705.1|Name=mRNA_S-dermatodea_contig11077.705.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=401bp
EDQASLASSSRLDSIVTQLQSEIESGATPQVQSRVNLDSLFADLRPPSSA LTSLSPTTTSSSPGIPTAAGINSDQPEKPPPASDTSGGLKPSPSTATPGG GQDLESLSDMLGRIQANAKARDLADSRTRAAALRSGGPLSEGLSTLTLSK HKELKTRFASIRQGRVSWVVLPMMRRARKAGIPLSTGVYNAAIAAYLGTP SKYEDALRVLELLRNSGDPDVGPDLKSYNIAMRVCGEAGKWRVVFKLLKE MEEDGIKPDTSSYNCALNGLAKCREWYRARRLFRKMGATGLTPDTYSFNG LVEAAGMGSISPRQNMIQIVYDMEQAGVEPTKYTYTLLLDCLAQRGKAFD GFQVMARLVDARAPLLPLGYRAGLLLCKEYGDWRRAMVLMEDMRVSKKRV S back to topmRNA from alignment at S-dermatodea_contig11077:4680..7417+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11077.705.1 ID=mRNA_S-dermatodea_contig11077.705.1|Name=mRNA_S-dermatodea_contig11077.705.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2738bp|location=Sequence derived from alignment at S-dermatodea_contig11077:4680..7417+ (Saccorhiza dermatodea SderLu1190fm monoicous) GAGGACCAGGCGTCTCTGGCCAGTAGCTCGCGTCTGGACAGCATTGTGAC
CCAGCTCCAGAGCGAAATCGAGTCCGGCGCGACTCCTCAAGTCCAATCTC
GTGTCAACCTAGATAGCCTGTTCGCGGACCTCCGACCGCCGAGCTCAGCG
TTAACGTCACTATCACCAACGACGACAAGCTCCTCCCCCGGGATTCCGAC
TGCGGCGGGAATCAACAGCGACCAGCCAGAGAAGCCCCCCCCTGCCAGTG
ACACCTCGGGTGGTTTGAAACCAAGCCCGAGCACCGCCACTCCAGGAGGG
GGGCAAGACCTAGAGTCCTTGTCCGATATGCTGGGCCGGATTCAGGCCAA
CGCGAAGGCTAGAGACCTCGCCGATTCGCGAACACGGGCGGCCGCTCTCA
GGTCGGGCGGCCCCCTCAGCGAAGGTCTCTCCACCCTGACGCTGTCAAAG
CACAAGGAGCTCAAGACGCGGTTCGCTAGCATCCGCCAGGGGAGGGTGAG
CTGGGTCGTGCTGCCTATGATGAGGCGCGCGCGCAAGGCGGGCATACCGT
TAAGCACCGGGGTATACAACGCGGCGATCGCTGCGTACCTCGGCACACCG
AGCAAGTACGAGGACGCGTTGCGGGTTCTGGAGCTATTGAGGAACTCGGG
GGACCCTGATGTAGGGCCGGACCTCAAGTCGTACAACATCGCGATGCGGG
TGTGCGGGGAGGCTGGCAAGTGGCGGGTTGTGTTCAAGGTGGGCCCTGCT
GTAGAAGTCTGTGACGGAATACTGGTATGGTAGGCAGTAGGCAGGTGTCA
TAACCGTCCTCTTCAGAATTACGTCACGCTGTCTGCTCTGTGGACGGATA
CGTAACGGCAAACTCCCGTGCCTCCGCTTCAAGTTGTGAGTTTCAAAAGC
ATCGGAGTGCTCTCACATTGAGGGTTAGGTCCATGGTGGATGTATTGTTG
TCTGGATAGGCGAGAGTCTGCCGCCTCCAGAGCTCAGTAAATGTTACCAG
CGGCGATGCAGAGTAAGCCACTTAGCTCTACATGCCTGCCTTGCTTGTTG
CAATGTCCAGCTTCTTTGCGGAGCCGGGGTGTTGTTGTCAGTGCTATGTC
CTACTACAGCGGCAATGTAGATCTAGAGCTCTAAGCCAAGAAAAAAAAAT
GCTTCTTGTTGTGCAGCAGAGCTCGCCGCTCGACTACAAATATCTTCATC
AGGCGCAAACAGCATGAGCTTCGTAAGATAACCACCGCCAGCTGCTTTCC
AGGCCAACCATGTTCAGCACAAGACAGCTATGATACTCGTTGCATCGCCT
CTCCTAAACAGGGCTGTACAAAGTTACCCAGCAGCGGTACAGCCAGCAGT
CTGCACCTCTCAACATCGCCGATAACCCGAACAGCGAAAGCTTGATCGCA
AAACCACGAAGCACCGTTGTCCTTGCCCTGCGCTAATGCGCCTCCCCTCG
AAAAGAACCAAGGCATACACTCACACTCCCAGCCCCCCCCCCGCCCCCGC
CCCCGCCCACGCCGCCATTCCCACGTACCAAACAACGACGAGCAGCTGCT
GAAGGAGATGGAGGAGGACGGCATAAAGCCCGACACATCATCGTACAACT
GCGCGTTGAACGGACTGGCGAAATGTCGGGAGTGGTATCGTGCTCGCCGA
CTGTTCCGCAAGATGGGTGCGACCGGCCTGACTCCTGATACGTACAGCTT
CAACGGGCTGGTGGAGGCTGCAGGGATGGGGAGCATCTCTCCCAGACAAA
ACATGATCCAGGTGAACGTGGTGCCTTGCCGCCCTTAGACGAAGCGACCG
TTTTTTGTCGCTATTTCTCCCCGACGATTTCGGCTTTCGTAGCGCTACTT
ATGGTTGGTCGTTCTCGTGTCTTCACAGCAGAGCGTGCTACACCTCTCAC
GTAAAAATTTGTCCTGGATAAAAACCTGACGCAGCACCAAATCGGAGTGA
TCTTGAGGCCTCGTCGTTCCGTCTCCACCCCTTGCCTTGCGCCTTGTGCT
CAGATCGTGTACGACATGGAGCAGGCAGGAGTGGAGCCAACGAAGTACAC
CTACACGCTGCTGCTGGACTGCTTGGCTCAGAGGGGCAAGGCTTTTGACG
GCTTTCAGGTGAGCAGATCTCGATGCTAGCGAGAGCGTGCTGCTCATGTA
TGTAAGACCTCGCGGTTCCGCCTATGGTCGACACGGCTCGGCAGCGTAAG
AGTTGGGAGAACGCCTCTCTTTTGTGCCCGCCTTAAGTAACCGGAGGGTG
TCTACACCTTGAGCCGCCACTCTCGCCAATTGTTTTCCGCTAGGAACAAT
TGGACGCGTGGCTCAGGGCGCCACATGAGCTCAGAGTCCGCCTGCGTCAT
GCCGGCAATCGTCCTCATTATAGTGTATCCAAAATGAAATTTAATTTGCT
GCCCGCGTCCGCAGCACCCGTTGGCAAGATCTTGCCTACAGCAACGTCGC
TTGCTCTACGGTTGTGTCGTTGAACGTAACGATCGAGCATCCCCCTGAGT
AACCGCGGCCTACCTGTCCAGTTTGGCTGGGCAAAACCTGATTTTCGTTG
TATCAATTGTGCTGTATTTCGTGTATTTCTTGTGGCCGGCAGGTTATGGC
GCGTCTGGTGGACGCTCGCGCCCCGCTTCTACCGCTGGGATACCGCGCCG
GGCTGCTGCTCTGCAAAGAGTACGGGGACTGGCGCCGCGCTATGGTGTTA
ATGGAGGATATGCGGGTTTCCAAAAAGCGCGTTTCGGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11077:4680..7417+ >mRNA_S-dermatodea_contig11077.705.1 ID=mRNA_S-dermatodea_contig11077.705.1|Name=mRNA_S-dermatodea_contig11077.705.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2406bp|location=Sequence derived from alignment at S-dermatodea_contig11077:4680..7417+ (Saccorhiza dermatodea SderLu1190fm monoicous) GAGGACCAGGCGTCTCTGGCCAGTAGCTCGCGTCTGGACAGCATTGTGAC CCAGCTCCAGAGCGAAATCGAGTCCGGCGCGACTCCTCAAGTCCAATCTC GTGTCAACCTAGATAGCCTGTTCGCGGACCTCCGACCGCCGAGCTCAGCG TTAACGTCACTATCACCAACGACGACAAGCTCCTCCCCCGGGATTCCGAC TGCGGCGGGAATCAACAGCGACCAGCCAGAGAAGCCCCCCCCTGCCAGTG ACACCTCGGGTGGTTTGAAACCAAGCCCGAGCACCGCCACTCCAGGAGGG GGGCAAGACCTAGAGTCCTTGTCCGATATGCTGGGCCGGATTCAGGCCAA CGCGAAGGCTAGAGACCTCGCCGATTCGCGAACACGGGCGGCCGCTCTCA GGTCGGGCGGCCCCCTCAGCGAAGGTCTCTCCACCCTGACGCTGTCAAAG CACAAGGAGCTCAAGACGCGGTTCGCTAGCATCCGCCAGGGGAGGGTGAG CTGGGTCGTGCTGCCTATGATGAGGCGCGCGCGCAAGGCGGGCATACCGT TAAGCACCGGGGTATACAACGCGGCGATCGCTGCGTACCTCGGCACACCG AGCAAGTACGAGGACGCGTTGCGGGTTCTGGAGCTATTGAGGAACTCGGG GGACCCTGATGTAGGGCCGGACCTCAAGTCGTACAACATCGCGATGCGGG TGTGCGGGGAGGCTGGCAAGTGGCGGGTTGTGTTCAAGGAGGACCAGGCG TCTCTGGCCAGTAGCTCGCGTCTGGACAGCATTGTGACCCAGCTCCAGAG CGAAATCGAGTCCGGCGCGACTCCTCAAGTCCAATCTCGTGTCAACCTAG ATAGCCTGTTCGCGGACCTCCGACCGCCGAGCTCAGCGTTAACGTCACTA TCACCAACGACGACAAGCTCCTCCCCCGGGATTCCGACTGCGGCGGGAAT CAACAGCGACCAGCCAGAGAAGCCCCCCCCTGCCAGTGACACCTCGGGTG GTTTGAAACCAAGCCCGAGCACCGCCACTCCAGGAGGGGGGCAAGACCTA GAGTCCTTGTCCGATATGCTGGGCCGGATTCAGGCCAACGCGAAGGCTAG AGACCTCGCCGATTCGCGAACACGGGCGGCCGCTCTCAGGTCGGGCGGCC CCCTCAGCGAAGGTCTCTCCACCCTGACGCTGTCAAAGCACAAGGAGCTC AAGACGCGGTTCGCTAGCATCCGCCAGGGGAGGGTGAGCTGGGTCGTGCT GCCTATGATGAGGCGCGCGCGCAAGGCGGGCATACCGTTAAGCACCGGGG TATACAACGCGGCGATCGCTGCGTACCTCGGCACACCGAGCAAGTACGAG GACGCGTTGCGGGTTCTGGAGCTATTGAGGAACTCGGGGGACCCTGATGT AGGGCCGGACCTCAAGTCGTACAACATCGCGATGCGGGTGTGCGGGGAGG CTGGCAAGTGGCGGGTTGTGTTCAAGCTGCTGAAGGAGATGGAGGAGGAC GGCATAAAGCCCGACACATCATCGTACAACTGCGCGTTGAACGGACTGGC GAAATGTCGGGAGTGGTATCGTGCTCGCCGACTGTTCCGCAAGATGGGTG CGACCGGCCTGACTCCTGATACGTACAGCTTCAACGGGCTGGTGGAGGCT GCAGGGATGGGGAGCATCTCTCCCAGACAAAACATGATCCAGCTGCTGAA GGAGATGGAGGAGGACGGCATAAAGCCCGACACATCATCGTACAACTGCG CGTTGAACGGACTGGCGAAATGTCGGGAGTGGTATCGTGCTCGCCGACTG TTCCGCAAGATGGGTGCGACCGGCCTGACTCCTGATACGTACAGCTTCAA CGGGCTGGTGGAGGCTGCAGGGATGGGGAGCATCTCTCCCAGACAAAACA TGATCCAGATCGTGTACGACATGGAGCAGGCAGGAGTGGAGCCAACGAAG TACACCTACACGCTGCTGCTGGACTGCTTGGCTCAGAGGGGCAAGGCTTT TGACGGCTTTCAGATCGTGTACGACATGGAGCAGGCAGGAGTGGAGCCAA CGAAGTACACCTACACGCTGCTGCTGGACTGCTTGGCTCAGAGGGGCAAG GCTTTTGACGGCTTTCAGGTTATGGCGCGTCTGGTGGACGCTCGCGCCCC GCTTCTACCGCTGGGATACCGCGCCGGGCTGCTGCTCTGCAAAGAGTACG GGGACTGGCGCCGCGCTATGGTGTTAATGGAGGATATGCGGGTTTCCAAA AAGCGCGTTTCGGTTATGGCGCGTCTGGTGGACGCTCGCGCCCCGCTTCT ACCGCTGGGATACCGCGCCGGGCTGCTGCTCTGCAAAGAGTACGGGGACT GGCGCCGCGCTATGGTGTTAATGGAGGATATGCGGGTTTCCAAAAAGCGC GTTTCG back to top
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