mRNA_S-dermatodea_contig11038.685.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11038.685.1
Unique NamemRNA_S-dermatodea_contig11038.685.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11038.685.1 vs. uniprot
Match: A0A6H5JUA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA3_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.620e-7
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:  169 QDVGSKLKTLVNGADTGEANKEVALKDGDLVKAGT 273
            +DVGSKLKT VNG++TGEA+KE++LK+GD VK GT
Sbjct:   48 KDVGSKLKTCVNGSETGEAHKEISLKEGDEVKVGT 82
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BLAST of mRNA_S-dermatodea_contig11038.685.1 vs. uniprot
Match: D8LKB3_ECTSI (Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB3_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 9.170e-7
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  169 QDVGSKLKTLVNGADTGEANKEVALKDGDLVKAGT 273
            +DVGSKLKT VNG++TGE +KE++LK+GD VK GT
Sbjct:   48 KDVGSKLKTCVNGSETGETHKEISLKEGDEVKVGT 82
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11038.685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUA3_9PHAE2.620e-771.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKB3_ECTSI9.170e-768.57Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11038contigS-dermatodea_contig11038:997..3221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSMAD/FHA domain
Ec32 orthologEc-01_009620.1
Exons3
Model size275
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11038.685.1prot_S-dermatodea_contig11038.685.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11038 1052..3145 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924184.8599415-UTR-S-dermatodea_contig11038:996..10511622924184.8599415-UTR-S-dermatodea_contig11038:996..1051Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11038 997..1051 +
1694079076.3444846-UTR-S-dermatodea_contig11038:996..10511694079076.3444846-UTR-S-dermatodea_contig11038:996..1051Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11038 997..1051 +
1622924184.898374-UTR-S-dermatodea_contig11038:3145..32211622924184.898374-UTR-S-dermatodea_contig11038:3145..3221Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11038 3146..3221 +
1694079076.3797643-UTR-S-dermatodea_contig11038:3145..32211694079076.3797643-UTR-S-dermatodea_contig11038:3145..3221Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11038 3146..3221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924184.868741-CDS-S-dermatodea_contig11038:1051..10851622924184.868741-CDS-S-dermatodea_contig11038:1051..1085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11038 1052..1085 +
1694079076.3536477-CDS-S-dermatodea_contig11038:1051..10851694079076.3536477-CDS-S-dermatodea_contig11038:1051..1085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11038 1052..1085 +
1622924184.877795-CDS-S-dermatodea_contig11038:1395..14771622924184.877795-CDS-S-dermatodea_contig11038:1395..1477Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11038 1396..1477 +
1694079076.363494-CDS-S-dermatodea_contig11038:1395..14771694079076.363494-CDS-S-dermatodea_contig11038:1395..1477Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11038 1396..1477 +
1622924184.8897648-CDS-S-dermatodea_contig11038:3117..31451622924184.8897648-CDS-S-dermatodea_contig11038:3117..3145Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11038 3118..3145 +
1694079076.3714082-CDS-S-dermatodea_contig11038:3117..31451694079076.3714082-CDS-S-dermatodea_contig11038:3117..3145Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11038 3118..3145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11038.685.1

>prot_S-dermatodea_contig11038.685.1 ID=prot_S-dermatodea_contig11038.685.1|Name=mRNA_S-dermatodea_contig11038.685.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=48bp
MWVLEMLDENKGVKSTVPLVEGAYSIGRKGSSISFAEDRTLAPSSRP*
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mRNA from alignment at S-dermatodea_contig11038:997..3221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11038.685.1 ID=mRNA_S-dermatodea_contig11038.685.1|Name=mRNA_S-dermatodea_contig11038.685.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2225bp|location=Sequence derived from alignment at S-dermatodea_contig11038:997..3221+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCGAGGGCGTTGCTAGCAGGCACGAAGTGGGCCACGCCTTTCCCACACG
AGAGGATGTGGGTACTCGAGATGCTGGATGAGAATAAAGGTTAGTAGCAA
CCTTCCCTCGAACGCAGGGAAGAGAAAACCGATCGCGAAAACATTGCATT
TTGCCCGACTACATCTTGTTGATTTCAAATTCGCACAGCATGTCGGTGTG
ATTCTGTGTCTCTCGGCATGCCTTGACGATGCTGGGTCCAGGCGTGCCTG
TCTACATAAGCGATACACATGGGACAGGGACCCATTTATGTGAAGTATAG
CATTCACCTGGGCCAGACCCTACCGATACAAGCTGAACTTTCTGCCTTGC
TCTCCCTACGTTGTATGATTATGCTGTGCGTGTGCTGTGGGTGCCACAGG
GGTGAAGAGCACGGTTCCCTTGGTGGAGGGCGCCTACTCCATTGGGAGGA
AGGGCTCCAGCATATCTTTCGCCGAGGACAGGTGCCCGTCTGATCCACTC
CCTCTGCGTCTGTAGAATAAACGCTCTAGCACTACTGCTGTAGCGATGAC
GGTAGCTGTTTGCGCGTCAAGGAACAAGTGCAAAGTCGTCGCCCTGCTGA
ACGCACCAGCTGTCACAGAGAGACCAAACAGGGATCGACTGACTCTTCAC
GTATCGTAGAATAGTTGCAGTCGTCCCCTTCCTGAAGCTTGGAAGGCACT
TGCCTGGCTCCTTGGTGGTCTACCCACGGGAGCGCTCGCAGCTGCTGCGA
TTTGGTCGATCGATGAGGATTCTTGAAGGCCTTGCCGTGCGCTTTCATAC
GCTACATAGCGCAAGCTTCAAGCTTGCGCTATTGTACATTCACCAGCACT
CAAAATGGTACATGTACTTACACTGAGGATGTGTATCATCACGGTATGTC
TTTGTATTTTGTTTATTTTACGATGAACGTGACACGATCCTTCAATTTTG
TTTTCGTTTTCGAACGCACAGGTCGGTCTCGCGGAAGCACGCTGAGGTGC
GCGTGGGGCCCGTCCCGGGAAGCGATCCCTCCAAACAGCCCGTCTGGGTC
AAGGTGGCCATGATTCCAATCGATATTTTTTGCGAACAGGGCAAGACCCA
AAGCTTAACCCTTTTGGTACTAGCCCCCTGTTTGGTGCGTCTGTTAGCAC
GTAATGAGGCGTGCTTGAAGCGCGGCCTTGGGGAACTCCATGGGTTATGA
CACAGGAATGAGAGAGAACGGAGCGCCAGGGAAACGGGGCTGTAGCTGTC
GACTGGCATCGATAGAGATTTCGTCGTTTCGCAGAGCCCTATTAATTATT
AATACTATTAATAATTTAATTGTACCAAAAGGGTTAAGCTTAGCTTGCGA
CAAGCTGCTCGTTTTTCGGACGTGGGATTGGAAGAAAGGTCCACAGGGCA
CCGCGGTGTTACTGGGGCAGCCCGCCTTCGTGCTCCTCAATACACAGCAC
AGTAGTAGTTGAGCGGTTGATTGACTGATTATCACACATGCAGCCGATCG
GCCTCTCCACCCTGATCCCCCTCGCGGTCGTATTAGAGGTCCAGAAGGTG
TAGATGAAAGATCCCGCCAAAAATGGGCATCCGCACACACGACGAGATAA
ACCAACCAAGAACCAGCCTCAAACGAAGAGCCCCAATACTGTACCTAGAA
AGACACCTGATCTACAGCTTATAACCTAAATCTTGATTACTCCGACTTCT
ACAGCATTGATATACGGCGGCCTGAAGAGCTGCTTAGATCCACACAGCAA
GCAGTGGTACTGGCAACAGTAGTATCAGTCCGTGAAATAGTAGGGACACG
CTTGCGCGATTACAGCTATTTTCTACTCTTTTCGTGGTCATGGTAATCGC
CGTGGCCTGGTGGGTGCTATTAATAGGGCTGTAATGCCTACGGTCATAAC
CCCTCCAGTAACGCCAACCCTGTTCAAAACCGCAACAAAACGGAGAGGTA
TGCCACTATTTGCCTTTTTTCGACCCTACCGCAATGCACTCCCTGCCCTC
TGCCCCATCTTCTTCACTGACCGCGCGCGTGGAGAACTCATGTGTGTCTT
TGCTGTTGCGTGTGTGTGTGCGTGTGTGTGTGTGCGTTTGCGCCTTCCTC
GCTTGCGATGTCGTTTCCCAGGACGTTGGCTCCAAGCTCAAGACCTTAGT
CAACGGCGCCGACACCGGCGAGGCGAACAAGGAGGTGGCTCTGAAGGACG
GGGACCTGGTCAAGGCCGGCACGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11038:997..3221+

>mRNA_S-dermatodea_contig11038.685.1 ID=mRNA_S-dermatodea_contig11038.685.1|Name=mRNA_S-dermatodea_contig11038.685.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig11038:997..3221+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGGGTACTCGAGATGCTGGATGAGAATAAAGATGTGGGTACTCGAGA
TGCTGGATGAGAATAAAGGGGTGAAGAGCACGGTTCCCTTGGTGGAGGGC
GCCTACTCCATTGGGAGGAAGGGCTCCAGCATATCTTTCGCCGAGGACAG
GGGTGAAGAGCACGGTTCCCTTGGTGGAGGGCGCCTACTCCATTGGGAGG
AAGGGCTCCAGCATATCTTTCGCCGAGGACAGGACGTTGGCTCCAAGCTC
AAGACCTTAGGACGTTGGCTCCAAGCTCAAGACCTTAG
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