mRNA_S-dermatodea_contig11020.676.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11020.676.1
Unique NamemRNA_S-dermatodea_contig11020.676.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11020.676.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.240e-25
Identity = 70/152 (46.05%), Postives = 82/152 (53.95%), Query Frame = 1 
Query:    1 CRRLSEVAGAHQHAADNVLALLSTGRRDGSKAGYLRELLVSCPRNSTRAAFESLATDAV-------------------------------------------------ARADPEGEQAASISRAMLGLLDEETYGAARGMSPGGLTHVAAVV 309
            C+RLS++A AHQHAADNVLALL+ GRR+GS AGYLRELLVSCPR STR AFE LA DAV                                                 A      +Q  ++SR +L LL +E+YG+ARG S GGL HVAAVV
Sbjct: 2496 CKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRTSTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAPASVAVVDQQTLALSRVLLDLLADESYGSARGASLGGLAHVAAVV 2647
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BLAST of mRNA_S-dermatodea_contig11020.676.1 vs. uniprot
Match: D8LU89_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU89_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.050e-23
Identity = 65/146 (44.52%), Postives = 78/146 (53.42%), Query Frame = 1 
Query:    1 CRRLSEVAGAHQHAADNVLALLSTGRRDGSKAGYLRELLVSCPRNSTRAAFESLATDAV-------------------------------------------------ARADPEGEQAASISRAMLGLLDEETYGAARGMSPGGLT 291
            C+RLS++A AHQHAADNVLALL+ GRR+GS AGYLRELLVSCPR STR AFE LA DAV                                                 A      +Q +++SR +L LL +E+YG+ARG S GGLT
Sbjct:   99 CKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAVAPASVAVVDQQTSALSRVLLDLLADESYGSARGGSLGGLT 244
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11020.676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTV6_9PHAE1.240e-2546.05USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LU89_ECTSI1.050e-2344.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11020contigS-dermatodea_contig11020:5161..6079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004090.1
Exons2
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924184.3606718-CDS-S-dermatodea_contig11020:5160..52531622924184.3606718-CDS-S-dermatodea_contig11020:5160..5253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 5161..5253 +
1694079076.0618057-CDS-S-dermatodea_contig11020:5160..52531694079076.0618057-CDS-S-dermatodea_contig11020:5160..5253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 5161..5253 +
1622924184.3738134-CDS-S-dermatodea_contig11020:5821..60791622924184.3738134-CDS-S-dermatodea_contig11020:5821..6079Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 5822..6079 +
1694079076.0729039-CDS-S-dermatodea_contig11020:5821..60791694079076.0729039-CDS-S-dermatodea_contig11020:5821..6079Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 5822..6079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11020.676.1prot_S-dermatodea_contig11020.676.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11020 5161..6079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11020.676.1

>prot_S-dermatodea_contig11020.676.1 ID=prot_S-dermatodea_contig11020.676.1|Name=mRNA_S-dermatodea_contig11020.676.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
CRRLSEVAGAHQHAADNVLALLSTGRRDGSKAGYLRELLVSCPRNSTRAA
FESLATDAVARADPEGEQAASISRAMLGLLDEETYGAARGMSPGGLTHVA
AVVAAAAAAGGSLSALL
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mRNA from alignment at S-dermatodea_contig11020:5161..6079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11020.676.1 ID=mRNA_S-dermatodea_contig11020.676.1|Name=mRNA_S-dermatodea_contig11020.676.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=919bp|location=Sequence derived from alignment at S-dermatodea_contig11020:5161..6079+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCAGGCGCCTTTCGGAGGTGGCTGGCGCTCACCAGCACGCCGCGGACAA
CGTCTTGGCCTTGCTTTCAACCGGCCGACGAGATGGCTCCAAGGTACTCC
AATGCGATGCGGATGGCTGTAGGTGCCCCCCGCCCGCCCGCCCACGGCGT
TTATTGCGGCAACCGTGGGGACGCAAAACGTTTCCGAGCTCCTTATCGTG
GTACAGTAGGCTGTTCGTACTGTGTCGAATACTACAGCTATGGACGCTCG
ATGGACGCTCGAACATACAGGAATTTTGAAGCCGAAATGCTGTTCGCGGA
TTTCCGCGCAAGCGTTTTTTACTTGCTCACATACGTAGGTCAGACTGAAA
CAGGTGAGCTTTGAGTCCCGGCGCTTGTGCTGTTCGTGAACCAAAAAGGG
CCGAACGATGTATTGAAGGGCCCCTCACCGAAACGCACACCACACGTGCA
TCGCCGTGGCTACCAACTACGGTAGTTGACAATCATCACAGGGGGGAACA
CCACTGGACATCGTGGCGATACTGTCGAGCTATCGGTCTCGCTTTACTTT
TAGGCGACAAATTTCCAGTATCCACACCAACCTCTCCTTATATGGTCATA
CCTCAGCGCTAAGTAACGGGTTTTGCTTGTTTTCCCCTTGTGTTTGTTTT
TTCTGTCGCAGGCTGGCTACCTACGAGAACTCCTCGTCTCCTGCCCGAGA
AACTCCACCCGCGCAGCCTTCGAGAGCCTCGCCACCGATGCTGTTGCGCG
CGCCGACCCGGAGGGCGAGCAGGCGGCCTCAATCTCGCGCGCAATGCTTG
GCCTCCTTGACGAAGAAACGTACGGGGCCGCGCGAGGCATGTCTCCGGGA
GGCCTGACTCACGTGGCGGCGGTGGTGGCGGCTGCCGCTGCCGCTGGGGG
CTCCCTGAGCGCTCTCCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11020:5161..6079+

>mRNA_S-dermatodea_contig11020.676.1 ID=mRNA_S-dermatodea_contig11020.676.1|Name=mRNA_S-dermatodea_contig11020.676.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig11020:5161..6079+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCAGGCGCCTTTCGGAGGTGGCTGGCGCTCACCAGCACGCCGCGGACAA
CGTCTTGGCCTTGCTTTCAACCGGCCGACGAGATGGCTCCAAGTGCAGGC
GCCTTTCGGAGGTGGCTGGCGCTCACCAGCACGCCGCGGACAACGTCTTG
GCCTTGCTTTCAACCGGCCGACGAGATGGCTCCAAGGCTGGCTACCTACG
AGAACTCCTCGTCTCCTGCCCGAGAAACTCCACCCGCGCAGCCTTCGAGA
GCCTCGCCACCGATGCTGTTGCGCGCGCCGACCCGGAGGGCGAGCAGGCG
GCCTCAATCTCGCGCGCAATGCTTGGCCTCCTTGACGAAGAAACGTACGG
GGCCGCGCGAGGCATGTCTCCGGGAGGCCTGACTCACGTGGCGGCGGTGG
TGGCGGCTGCCGCTGCCGCTGGGGGCTCCCTGAGCGCTCTCCTGGCTGGC
TACCTACGAGAACTCCTCGTCTCCTGCCCGAGAAACTCCACCCGCGCAGC
CTTCGAGAGCCTCGCCACCGATGCTGTTGCGCGCGCCGACCCGGAGGGCG
AGCAGGCGGCCTCAATCTCGCGCGCAATGCTTGGCCTCCTTGACGAAGAA
ACGTACGGGGCCGCGCGAGGCATGTCTCCGGGAGGCCTGACTCACGTGGC
GGCGGTGGTGGCGGCTGCCGCTGCCGCTGGGGGCTCCCTGAGCGCTCTCC
TG
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